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Items: 35

1.

Bacteriophage Therapy of Ventilator-associated Pneumonia and Empyema caused by Pseudomonas aeruginosa.

Maddocks S, Petrovic Fabijan A, Ho J, Lin RC, Ben Zakour NL, Dugan C, Kliman I, Branston S, Morales S, Iredell JR.

Am J Respir Crit Care Med. 2019 Aug 22. doi: 10.1164/rccm.201904-0839LE. [Epub ahead of print] No abstract available.

PMID:
31437402
2.

Host adaptation and convergent evolution increases antibiotic resistance without loss of virulence in a major human pathogen.

Fajardo-Lubián A, Ben Zakour NL, Agyekum A, Qi Q, Iredell JR.

PLoS Pathog. 2019 Mar 15;15(3):e1007218. doi: 10.1371/journal.ppat.1007218. eCollection 2019 Mar.

3.

Correction: Within-host whole genome analysis of an antibiotic resistant Pseudomonas aeruginosa strain sub-type in cystic fibrosis.

Sherrard LJ, Tai AS, Wee BA, Ramsay KA, Kidd TJ, Ben Zakour NL, Whiley DM, Beatson SA, Bell SC.

PLoS One. 2019 Jan 14;14(1):e0210929. doi: 10.1371/journal.pone.0210929. eCollection 2019.

4.

Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre.

Wee BA, Tai AS, Sherrard LJ, Ben Zakour NL, Hanks KR, Kidd TJ, Ramsay KA, Lamont I, Whiley DM, Bell SC, Beatson SA.

BMC Genomics. 2018 Aug 30;19(1):644. doi: 10.1186/s12864-018-5018-x.

5.

Microevolution of Streptococcus agalactiae ST-261 from Australia Indicates Dissemination via Imported Tilapia and Ongoing Adaptation to Marine Hosts or Environment.

Kawasaki M, Delamare-Deboutteville J, Bowater RO, Walker MJ, Beatson S, Ben Zakour NL, Barnes AC.

Appl Environ Microbiol. 2018 Aug 1;84(16). pii: e00859-18. doi: 10.1128/AEM.00859-18. Print 2018 Aug 15.

6.

Whole genome analysis of cephalosporin-resistant Escherichia coli from bloodstream infections in Australia, New Zealand and Singapore: high prevalence of CMY-2 producers and ST131 carrying blaCTX-M-15 and blaCTX-M-27.

Harris PNA, Ben Zakour NL, Roberts LW, Wailan AM, Zowawi HM, Tambyah PA, Lye DC, Jureen R, Lee TH, Yin M, Izharuddin E, Looke D, Runnegar N, Rogers B, Bhally H, Crowe A, Schembri MA, Beatson SA, Paterson DL; MERINO Trial investigators.

J Antimicrob Chemother. 2018 Mar 1;73(3):634-642. doi: 10.1093/jac/dkx466.

PMID:
29253152
7.

Complete Genome Sequence of Serotype III Streptococcus agalactiae Sequence Type 17 Strain 874391.

Sullivan MJ, Forde BM, Prince DW, Ipe DS, Ben Zakour NL, Davies MR, Dougan G, Beatson SA, Ulett GC.

Genome Announc. 2017 Oct 19;5(42). pii: e01107-17. doi: 10.1128/genomeA.01107-17.

8.

Within-host whole genome analysis of an antibiotic resistant Pseudomonas aeruginosa strain sub-type in cystic fibrosis.

Sherrard LJ, Tai AS, Wee BA, Ramsay KA, Kidd TJ, Ben Zakour NL, Whiley DM, Beatson SA, Bell SC.

PLoS One. 2017 Mar 8;12(3):e0172179. doi: 10.1371/journal.pone.0172179. eCollection 2017. Erratum in: PLoS One. 2019 Jan 14;14(1):e0210929.

9.

Erratum for Ben Zakour et al., Sequential Acquisition of Virulence and Fluoroquinolone Resistance Has Shaped the Evolution of Escherichia coli ST131.

Ben Zakour NL, Alsheikh-Hussain AS, Ashcroft MM, Khanh Nhu NT, Roberts LW, Stanton-Cook M, Schembri MA, Beatson SA.

MBio. 2016 Jun 28;7(3). pii: e00958-16. doi: 10.1128/mBio.00958-16. No abstract available.

10.

Sequential Acquisition of Virulence and Fluoroquinolone Resistance Has Shaped the Evolution of Escherichia coli ST131.

Ben Zakour NL, Alsheikh-Hussain AS, Ashcroft MM, Khanh Nhu NT, Roberts LW, Stanton-Cook M, Schembri MA, Beatson SA.

MBio. 2016 Apr 26;7(2):e00347-16. doi: 10.1128/mBio.00347-16. Erratum in: MBio. 2016 Jun 28;7(3):null.

11.

Discovery and Characterization of Human-Urine Utilization by Asymptomatic-Bacteriuria-Causing Streptococcus agalactiae.

Ipe DS, Ben Zakour NL, Sullivan MJ, Beatson SA, Ulett KB, Benjamin WH Jr, Davies MR, Dando SJ, King NP, Cripps AW, Schembri MA, Dougan G, Ulett GC.

Infect Immun. 2015 Nov 9;84(1):307-19. doi: 10.1128/IAI.00938-15. Print 2016 Jan.

12.

Transfer of scarlet fever-associated elements into the group A Streptococcus M1T1 clone.

Ben Zakour NL, Davies MR, You Y, Chen JH, Forde BM, Stanton-Cook M, Yang R, Cui Y, Barnett TC, Venturini C, Ong CL, Tse H, Dougan G, Zhang J, Yuen KY, Beatson SA, Walker MJ.

Sci Rep. 2015 Nov 2;5:15877. doi: 10.1038/srep15877.

13.

Hospital-wide Eradication of a Nosocomial Legionella pneumophila Serogroup 1 Outbreak.

Bartley PB, Ben Zakour NL, Stanton-Cook M, Muguli R, Prado L, Garnys V, Taylor K, Barnett TC, Pinna G, Robson J, Paterson DL, Walker MJ, Schembri MA, Beatson SA.

Clin Infect Dis. 2016 Feb 1;62(3):273-279. doi: 10.1093/cid/civ870. Epub 2015 Oct 13.

PMID:
26462745
14.

Molecular characterization of a multidrug resistance IncF plasmid from the globally disseminated Escherichia coli ST131 clone.

Phan MD, Forde BM, Peters KM, Sarkar S, Hancock S, Stanton-Cook M, Ben Zakour NL, Upton M, Beatson SA, Schembri MA.

PLoS One. 2015 Apr 15;10(4):e0122369. doi: 10.1371/journal.pone.0122369. eCollection 2015.

15.

Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition.

Beatson SA, Ben Zakour NL, Totsika M, Forde BM, Watts RE, Mabbett AN, Szubert JM, Sarkar S, Phan MD, Peters KM, Petty NK, Alikhan NF, Sullivan MJ, Gawthorne JA, Stanton-Cook M, Nhu NT, Chong TM, Yin WF, Chan KG, Hancock V, Ussery DW, Ulett GC, Schembri MA.

Infect Immun. 2015 May;83(5):1749-64. doi: 10.1128/IAI.02810-14. Epub 2015 Feb 9.

16.

Mutual exclusivity of hyaluronan and hyaluronidase in invasive group A Streptococcus.

Henningham A, Yamaguchi M, Aziz RK, Kuipers K, Buffalo CZ, Dahesh S, Choudhury B, Van Vleet J, Yamaguchi Y, Seymour LM, Ben Zakour NL, He L, Smith HV, Grimwood K, Beatson SA, Ghosh P, Walker MJ, Nizet V, Cole JN.

J Biol Chem. 2014 Nov 14;289(46):32303-15. doi: 10.1074/jbc.M114.602847. Epub 2014 Sep 29.

17.

The complete genome sequence of Escherichia coli EC958: a high quality reference sequence for the globally disseminated multidrug resistant E. coli O25b:H4-ST131 clone.

Forde BM, Ben Zakour NL, Stanton-Cook M, Phan MD, Totsika M, Peters KM, Chan KG, Schembri MA, Upton M, Beatson SA.

PLoS One. 2014 Aug 15;9(8):e104400. doi: 10.1371/journal.pone.0104400. eCollection 2014.

18.

Genome analysis and CRISPR typing of Salmonella enterica serovar Virchow.

Bachmann NL, Petty NK, Ben Zakour NL, Szubert JM, Savill J, Beatson SA.

BMC Genomics. 2014 May 21;15:389. doi: 10.1186/1471-2164-15-389.

19.

Global dissemination of a multidrug resistant Escherichia coli clone.

Petty NK, Ben Zakour NL, Stanton-Cook M, Skippington E, Totsika M, Forde BM, Phan MD, Gomes Moriel D, Peters KM, Davies M, Rogers BA, Dougan G, Rodriguez-Baño J, Pascual A, Pitout JD, Upton M, Paterson DL, Walsh TR, Schembri MA, Beatson SA.

Proc Natl Acad Sci U S A. 2014 Apr 15;111(15):5694-9. doi: 10.1073/pnas.1322678111. Epub 2014 Mar 31.

20.

Streptococcal collagen-like protein A and general stress protein 24 are immunomodulating virulence factors of group A Streptococcus.

Tsatsaronis JA, Hollands A, Cole JN, Maamary PG, Gillen CM, Ben Zakour NL, Kotb M, Nizet V, Beatson SA, Walker MJ, Sanderson-Smith ML.

FASEB J. 2013 Jul;27(7):2633-43. doi: 10.1096/fj.12-226662. Epub 2013 Mar 26.

21.

Acquisition of the Sda1-encoding bacteriophage does not enhance virulence of the serotype M1 Streptococcus pyogenes strain SF370.

Venturini C, Ong CL, Gillen CM, Ben-Zakour NL, Maamary PG, Nizet V, Beatson SA, Walker MJ.

Infect Immun. 2013 Jun;81(6):2062-9. doi: 10.1128/IAI.00192-13. Epub 2013 Mar 25.

22.

Comparative genomics of the Staphylococcus intermedius group of animal pathogens.

Ben Zakour NL, Beatson SA, van den Broek AH, Thoday KL, Fitzgerald JR.

Front Cell Infect Microbiol. 2012 Apr 18;2:44. doi: 10.3389/fcimb.2012.00044. eCollection 2012.

23.

Tracing the evolutionary history of the pandemic group A streptococcal M1T1 clone.

Maamary PG, Ben Zakour NL, Cole JN, Hollands A, Aziz RK, Barnett TC, Cork AJ, Henningham A, Sanderson-Smith M, McArthur JD, Venturini C, Gillen CM, Kirk JK, Johnson DR, Taylor WL, Kaplan EL, Kotb M, Nizet V, Beatson SA, Walker MJ.

FASEB J. 2012 Nov;26(11):4675-84. doi: 10.1096/fj.12-212142. Epub 2012 Aug 9.

24.

Analysis of a Streptococcus pyogenes puerperal sepsis cluster by use of whole-genome sequencing.

Ben Zakour NL, Venturini C, Beatson SA, Walker MJ.

J Clin Microbiol. 2012 Jul;50(7):2224-8. doi: 10.1128/JCM.00675-12. Epub 2012 Apr 18.

25.

Characterisation of a cell wall-anchored protein of Staphylococcus saprophyticus associated with linoleic acid resistance.

King NP, Sakinç T, Ben Zakour NL, Totsika M, Heras B, Simerska P, Shepherd M, Gatermann SG, Beatson SA, Schembri MA.

BMC Microbiol. 2012 Jan 15;12:8. doi: 10.1186/1471-2180-12-8.

26.

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons.

Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA.

BMC Genomics. 2011 Aug 8;12:402. doi: 10.1186/1471-2164-12-402.

27.

Genomic and surface proteomic analysis of the canine pathogen Staphylococcus pseudintermedius reveals proteins that mediate adherence to the extracellular matrix.

Bannoehr J, Ben Zakour NL, Reglinski M, Inglis NF, Prabhakaran S, Fossum E, Smith DG, Wilson GJ, Cartwright RA, Haas J, Hook M, van den Broek AH, Thoday KL, Fitzgerald JR.

Infect Immun. 2011 Aug;79(8):3074-86. doi: 10.1128/IAI.00137-11. Epub 2011 May 16.

28.

Complete genome sequence of the canine pathogen Staphylococcus pseudintermedius.

Ben Zakour NL, Bannoehr J, van den Broek AH, Thoday KL, Fitzgerald JR.

J Bacteriol. 2011 May;193(9):2363-4. doi: 10.1128/JB.00137-11. Epub 2011 Mar 11.

29.

Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation.

Guinane CM, Ben Zakour NL, Tormo-Mas MA, Weinert LA, Lowder BV, Cartwright RA, Smyth DS, Smyth CJ, Lindsay JA, Gould KA, Witney A, Hinds J, Bollback JP, Rambaut A, Penadés JR, Fitzgerald JR.

Genome Biol Evol. 2010 Jul 12;2:454-66. doi: 10.1093/gbe/evq031.

30.

Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus.

Lowder BV, Guinane CM, Ben Zakour NL, Weinert LA, Conway-Morris A, Cartwright RA, Simpson AJ, Rambaut A, Nübel U, Fitzgerald JR.

Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19545-50. doi: 10.1073/pnas.0909285106. Epub 2009 Nov 2.

31.

Staphylococcus aureus virulence expression is impaired by Lactococcus lactis in mixed cultures.

Even S, Charlier C, Nouaille S, Ben Zakour NL, Cretenet M, Cousin FJ, Gautier M, Cocaign-Bousquet M, Loubière P, Le Loir Y.

Appl Environ Microbiol. 2009 Jul;75(13):4459-72. doi: 10.1128/AEM.02388-08. Epub 2009 May 8.

32.

Pathogenomics of the staphylococci: insights into niche adaptation and the emergence of new virulent strains.

Ben Zakour NL, Guinane CM, Fitzgerald JR.

FEMS Microbiol Lett. 2008 Dec;289(1):1-12. doi: 10.1111/j.1574-6968.2008.01384.x. Review.

33.

Tandem repeat sequence analysis of staphylococcal protein A (spa) gene in methicillin-resistant Staphylococcus pseudintermedius.

Moodley A, Stegger M, Ben Zakour NL, Fitzgerald JR, Guardabassi L.

Vet Microbiol. 2009 Mar 30;135(3-4):320-6. doi: 10.1016/j.vetmic.2008.09.070. Epub 2008 Sep 30.

PMID:
18995972
34.

Genome-wide analysis of ruminant Staphylococcus aureus reveals diversification of the core genome.

Ben Zakour NL, Sturdevant DE, Even S, Guinane CM, Barbey C, Alves PD, Cochet MF, Gautier M, Otto M, Fitzgerald JR, Le Loir Y.

J Bacteriol. 2008 Oct;190(19):6302-17. doi: 10.1128/JB.01984-07. Epub 2008 Jun 20.

35.

Population genetic structure of the Staphylococcus intermedius group: insights into agr diversification and the emergence of methicillin-resistant strains.

Bannoehr J, Ben Zakour NL, Waller AS, Guardabassi L, Thoday KL, van den Broek AH, Fitzgerald JR.

J Bacteriol. 2007 Dec;189(23):8685-92. Epub 2007 Sep 28. Erratum in: J Bacteriol. 2008 May;190(10):3791.

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