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Items: 18

1.

Cardiolipin depletion-induced changes in the Trypanosoma brucei proteome.

Schädeli D, Serricchio M, Ben Hamidane H, Loffreda A, Hemphill A, Beneke T, Gluenz E, Graumann J, Bütikofer P.

FASEB J. 2019 Sep 19:fj201901184RR. doi: 10.1096/fj.201901184RR. [Epub ahead of print]

PMID:
31536395
2.

A Systems-Level Characterization of the Differentiation of Human Embryonic Stem Cells into Mesenchymal Stem Cells.

Billing AM, Dib SS, Bhagwat AM, da Silva IT, Drummond RD, Hayat S, Al-Mismar R, Ben Hamidane H, Goswami N, Engholm-Keller K, Larsen MR, Suhre K, Rafii A, Graumann J.

Mol Cell Proteomics. 2019 Jul 22. pii: mcp.RA119.001356. doi: 10.1074/mcp.RA119.001356. [Epub ahead of print]

3.

Proteomic profiling of human cancer pseudopodia for the identification of anti-metastatic drug candidates.

Choi S, Bhagwat AM, Al Mismar R, Goswami N, Ben Hamidane H, Sun L, Graumann J.

Sci Rep. 2018 Apr 11;8(1):5858. doi: 10.1038/s41598-018-24256-8.

4.

Complementarity of SOMAscan to LC-MS/MS and RNA-seq for quantitative profiling of human embryonic and mesenchymal stem cells.

Billing AM, Ben Hamidane H, Bhagwat AM, Cotton RJ, Dib SS, Kumar P, Hayat S, Goswami N, Suhre K, Rafii A, Graumann J.

J Proteomics. 2017 Jan 6;150:86-97. doi: 10.1016/j.jprot.2016.08.023. Epub 2016 Sep 6.

5.

The arc of Mass Spectrometry Exchange Formats is long, but it bends toward HDF5.

Askenazi M, Ben Hamidane H, Graumann J.

Mass Spectrom Rev. 2017 Sep;36(5):668-673. doi: 10.1002/mas.21522. Epub 2016 Oct 14. Review.

6.

Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers.

Billing AM, Ben Hamidane H, Dib SS, Cotton RJ, Bhagwat AM, Kumar P, Hayat S, Yousri NA, Goswami N, Suhre K, Rafii A, Graumann J.

Sci Rep. 2016 Feb 9;6:21507. doi: 10.1038/srep21507.

7.

SIRT1 Limits Adipocyte Hyperplasia through c-Myc Inhibition.

Abdesselem H, Madani A, Hani A, Al-Noubi M, Goswami N, Ben Hamidane H, Billing AM, Pasquier J, Bonkowski MS, Halabi N, Dalloul R, Sheriff MZ, Mesaeli N, ElRayess M, Sinclair DA, Graumann J, Mazloum NA.

J Biol Chem. 2016 Jan 29;291(5):2119-35. doi: 10.1074/jbc.M115.675645. Epub 2015 Dec 11.

8.

Quantitative proteomic approaches in mouse: stable isotope incorporation by metabolic (SILAC) or chemical labeling (reductive dimethylation) combined with high-resolution mass spectrometry.

Billing AM, Ben Hamidane H, Graumann J.

Curr Protoc Mouse Biol. 2015 Mar 2;5(1):1-20. doi: 10.1002/9780470942390.mo140156.

PMID:
25727197
9.

Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver.

Blanc V, Park E, Schaefer S, Miller M, Lin Y, Kennedy S, Billing AM, Ben Hamidane H, Graumann J, Mortazavi A, Nadeau JH, Davidson NO.

Genome Biol. 2014 Jun 19;15(6):R79. doi: 10.1186/gb-2014-15-6-r79.

10.

Heterolytic N-Cα bond cleavage in electron capture and transfer dissociation of peptide cations.

Wodrich MD, Zhurov KO, Vorobyev A, Ben Hamidane H, Corminboeuf C, Tsybin YO.

J Phys Chem B. 2012 Sep 6;116(35):10807-15. doi: 10.1021/jp306703f. Epub 2012 Aug 27.

PMID:
22889094
11.

Repeatability and reproducibility of product ion abundances in electron capture dissociation mass spectrometry of peptides.

Ben Hamidane H, Vorobyev A, Tsybin YO.

Eur J Mass Spectrom (Chichester). 2011;17(4):321-31. doi: 10.1255/ejms.1143.

PMID:
22006634
12.

On the utility of predictive chromatography to complement mass spectrometry based intact protein identification.

Pridatchenko ML, Perlova TY, Ben Hamidane H, Goloborodko AA, Tarasova IA, Gorshkov AV, Evreinov VV, Tsybin YO, Gorshkov MV.

Anal Bioanal Chem. 2012 Mar;402(8):2521-9. doi: 10.1007/s00216-011-5350-3. Epub 2011 Sep 8.

PMID:
21901462
13.

Structural preferences of gas-phase M2TMP monomers upon sequence variations.

Albrieux F, Ben Hamidane H, Calvo F, Chirot F, Tsybin YO, Antoine R, Lemoine J, Dugourd P.

J Phys Chem A. 2011 May 12;115(18):4711-8. doi: 10.1021/jp110732h. Epub 2011 Apr 13.

PMID:
21488680
14.

Radical stability directs electron capture and transfer dissociation of β-amino acids in peptides.

Ben Hamidane H, Vorobyev A, Larregola M, Lukaszuk A, Tourwé D, Lavielle S, Karoyan P, Tsybin YO.

Chemistry. 2010 Apr 19;16(15):4612-22. doi: 10.1002/chem.200902480. Epub 2010 Mar 16.

PMID:
20235239
15.

Electron capture dissociation product ion abundances at the X amino acid in RAAAA-X-AAAAK peptides correlate with amino acid polarity and radical stability.

Vorobyev A, Ben Hamidane H, Tsybin YO.

J Am Soc Mass Spectrom. 2009 Dec;20(12):2273-83. doi: 10.1016/j.jasms.2009.08.019. Epub 2009 Sep 3.

16.

Periodic sequence distribution of product ion abundances in electron capture dissociation of amphipathic peptides and proteins.

Ben Hamidane H, He H, Tsybin OY, Emmett MR, Hendrickson CL, Marshall AG, Tsybin YO.

J Am Soc Mass Spectrom. 2009 Jun;20(6):1182-92. doi: 10.1016/j.jasms.2009.02.015. Epub 2009 Feb 13.

17.

Electron capture and transfer dissociation: Peptide structure analysis at different ion internal energy levels.

Ben Hamidane H, Chiappe D, Hartmer R, Vorobyev A, Moniatte M, Tsybin YO.

J Am Soc Mass Spectrom. 2009 Apr;20(4):567-75. doi: 10.1016/j.jasms.2008.11.016. Epub 2008 Nov 27.

18.

High resolution mass spectrometry for studying the interactions of cisplatin with oligonucleotides.

Egger AE, Hartinger CG, Ben Hamidane H, Tsybin YO, Keppler BK, Dyson PJ.

Inorg Chem. 2008 Nov 17;47(22):10626-33. doi: 10.1021/ic801371r. Epub 2008 Oct 24.

PMID:
18947179

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