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Items: 21

1.

Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California.

Ul-Hasan S, Bowers RM, Figueroa-Montiel A, Licea-Navarro AF, Beman JM, Woyke T, Nobile CJ.

PLoS One. 2019 Feb 14;14(2):e0212355. doi: 10.1371/journal.pone.0212355. eCollection 2019.

2.

Microbial community networks associated with variations in community respiration rates during upwelling in nearshore Monterey Bay, California.

Wilson JM, Litvin SY, Beman JM.

Environ Microbiol Rep. 2018 Jun;10(3):272-282. doi: 10.1111/1758-2229.12635. Epub 2018 Mar 26.

PMID:
29488352
3.

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

Graham EB, Knelman JE, Schindlbacher A, Siciliano S, Breulmann M, Yannarell A, Beman JM, Abell G, Philippot L, Prosser J, Foulquier A, Yuste JC, Glanville HC, Jones DL, Angel R, Salminen J, Newton RJ, Bürgmann H, Ingram LJ, Hamer U, Siljanen HM, Peltoniemi K, Potthast K, Bañeras L, Hartmann M, Banerjee S, Yu RQ, Nogaro G, Richter A, Koranda M, Castle SC, Goberna M, Song B, Chatterjee A, Nunes OC, Lopes AR, Cao Y, Kaisermann A, Hallin S, Strickland MS, Garcia-Pausas J, Barba J, Kang H, Isobe K, Papaspyrou S, Pastorelli R, Lagomarsino A, Lindström ES, Basiliko N, Nemergut DR.

Front Microbiol. 2016 Feb 24;7:214. doi: 10.3389/fmicb.2016.00214. eCollection 2016.

4.

Microbial diversity and community structure along a lake elevation gradient in Yosemite National Park, California, USA.

Hayden CJ, Beman JM.

Environ Microbiol. 2016 Jun;18(6):1782-91. doi: 10.1111/1462-2920.12938. Epub 2015 Aug 5.

PMID:
26058326
5.

Soil microbial community structure is unaltered by plant invasion, vegetation clipping, and nitrogen fertilization in experimental semi-arid grasslands.

Carey CJ, Beman JM, Eviner VT, Malmstrom CM, Hart SC.

Front Microbiol. 2015 May 20;6:466. doi: 10.3389/fmicb.2015.00466. eCollection 2015.

6.

Transcriptomic evidence for microbial sulfur cycling in the eastern tropical North Pacific oxygen minimum zone.

Carolan MT, Smith JM, Beman JM.

Front Microbiol. 2015 May 11;6:334. doi: 10.3389/fmicb.2015.00334. eCollection 2015.

7.

High abundances of potentially active ammonia-oxidizing bacteria and archaea in oligotrophic, high-altitude lakes of the Sierra Nevada, California, USA.

Hayden CJ, Beman JM.

PLoS One. 2014 Nov 17;9(11):e111560. doi: 10.1371/journal.pone.0111560. eCollection 2014.

8.

Ocean-scale patterns in community respiration rates along continuous transects across the Pacific Ocean.

Wilson JM, Severson R, Beman JM.

PLoS One. 2014 Jul 21;9(7):e99821. doi: 10.1371/journal.pone.0099821. eCollection 2014.

9.

Deoxygenation alters bacterial diversity and community composition in the ocean's largest oxygen minimum zone.

Beman JM, Carolan MT.

Nat Commun. 2013;4:2705. doi: 10.1038/ncomms3705.

PMID:
24162368
10.

Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean.

Beman JM, Leilei Shih J, Popp BN.

ISME J. 2013 Nov;7(11):2192-205. doi: 10.1038/ismej.2013.96. Epub 2013 Jun 27.

11.

Quantification of ammonia oxidation rates and the distribution of ammonia-oxidizing Archaea and Bacteria in marine sediment depth profiles from Catalina Island, California.

Beman JM, Bertics VJ, Braunschweiler T, Wilson JM.

Front Microbiol. 2012 Jul 24;3:263. doi: 10.3389/fmicb.2012.00263. eCollection 2012.

12.

Oceanographic and biological effects of shoaling of the oxygen minimum zone.

Gilly WF, Beman JM, Litvin SY, Robison BH.

Ann Rev Mar Sci. 2013;5:393-420. doi: 10.1146/annurev-marine-120710-100849. Epub 2012 Sep 17.

PMID:
22809177
13.

Marine bacterial, archaeal and protistan association networks reveal ecological linkages.

Steele JA, Countway PD, Xia L, Vigil PD, Beman JM, Kim DY, Chow CE, Sachdeva R, Jones AC, Schwalbach MS, Rose JM, Hewson I, Patel A, Sun F, Caron DA, Fuhrman JA.

ISME J. 2011 Sep;5(9):1414-25. doi: 10.1038/ismej.2011.24. Epub 2011 Mar 24.

14.

Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California.

Beman JM, Steele JA, Fuhrman JA.

ISME J. 2011 Jul;5(7):1077-85. doi: 10.1038/ismej.2010.204. Epub 2011 Jan 13.

15.

Global declines in oceanic nitrification rates as a consequence of ocean acidification.

Beman JM, Chow CE, King AL, Feng Y, Fuhrman JA, Andersson A, Bates NR, Popp BN, Hutchins DA.

Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):208-13. doi: 10.1073/pnas.1011053108. Epub 2010 Dec 20.

16.

Population ecology of nitrifying archaea and bacteria in the Southern California Bight.

Beman JM, Sachdeva R, Fuhrman JA.

Environ Microbiol. 2010 May;12(5):1282-92. doi: 10.1111/j.1462-2920.2010.02172.x. Epub 2010 Feb 18.

PMID:
20192962
17.

Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California.

Beman JM, Popp BN, Francis CA.

ISME J. 2008 Apr;2(4):429-41. doi: 10.1038/ismej.2007.118. Epub 2008 Jan 17. Erratum in: ISME J. 2008 Apr;2(4):453.

PMID:
18200070
18.
19.

Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals.

Beman JM, Roberts KJ, Wegley L, Rohwer F, Francis CA.

Appl Environ Microbiol. 2007 Sep;73(17):5642-7. Epub 2007 Jun 22.

20.
21.

Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean.

Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB.

Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14683-8. Epub 2005 Sep 26.

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