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Items: 1 to 50 of 84

1.

Tethering of CHROMATOR and dCTCF proteins results in decompaction of condensed bands in the Drosophila melanogaster polytene chromosomes but does not affect their transcription and replication timing.

Pokholkova GV, Demakov SA, Andreenkov OV, Andreenkova NG, Volkova EI, Belyaeva ES, Zhimulev IF.

PLoS One. 2018 Apr 2;13(4):e0192634. doi: 10.1371/journal.pone.0192634. eCollection 2018.

2.

Polytene Chromosomes - A Portrait of Functional Organization of the Drosophila Genome.

Zykova TY, Levitsky VG, Belyaeva ES, Zhimulev IF.

Curr Genomics. 2018 Apr;19(3):179-191. doi: 10.2174/1389202918666171016123830. Review.

PMID:
29606905
3.

Chromatin Heterogeneity and Distribution of Regulatory Elements in the Late-Replicating Intercalary Heterochromatin Domains of Drosophila melanogaster Chromosomes.

Khoroshko VA, Levitsky VG, Zykova TY, Antonenko OV, Belyaeva ES, Zhimulev IF.

PLoS One. 2016 Jun 14;11(6):e0157147. doi: 10.1371/journal.pone.0157147. eCollection 2016.

4.

Drosophila polytene chromosome bands formed by gene introns.

Zhimulev IF, Boldyreva LV, Demakova OV, Poholkova GV, Khoroshko VA, Zykova TY, Lavrov SA, Belyaeva ES.

Dokl Biochem Biophys. 2016;466:57-60. doi: 10.1134/S1607672916010178. Epub 2016 Mar 31.

PMID:
27025489
5.

Tethering of SUUR and HP1 proteins results in delayed replication of euchromatic regions in Drosophila melanogaster polytene chromosomes.

Pokholkova GV, Koryakov DE, Pindyurin AV, Kozhevnikova EN, Belyakin SN, Andreyenkov OV, Belyaeva ES, Zhimulev IF.

Chromosoma. 2015 Jun;124(2):209-20. doi: 10.1007/s00412-014-0491-8. Epub 2014 Nov 16.

PMID:
25398563
6.

Genetic organization of interphase chromosome bands and interbands in Drosophila melanogaster.

Zhimulev IF, Zykova TY, Goncharov FP, Khoroshko VA, Demakova OV, Semeshin VF, Pokholkova GV, Boldyreva LV, Demidova DS, Babenko VN, Demakov SA, Belyaeva ES.

PLoS One. 2014 Jul 29;9(7):e101631. doi: 10.1371/journal.pone.0101631. eCollection 2014.

7.

Late replication domains are evolutionary conserved in the Drosophila genome.

Andreyenkova NG, Kolesnikova TD, Makunin IV, Pokholkova GV, Boldyreva LV, Zykova TY, Zhimulev IF, Belyaeva ES.

PLoS One. 2013 Dec 31;8(12):e83319. doi: 10.1371/journal.pone.0083319. eCollection 2013.

8.

Induced transcription results in local changes in chromatin structure, replication timing, and DNA polytenization in a site of intercalary heterochromatin.

Koryakov DE, Pokholkova GV, Maksimov DA, Belyakin SN, Belyaeva ES, Zhimulev IF.

Chromosoma. 2012 Dec;121(6):573-83. doi: 10.1007/s00412-012-0382-9. Epub 2012 Sep 27.

PMID:
23015267
9.

Banding patterns in Drosophila melanogaster polytene chromosomes correlate with DNA-binding protein occupancy.

Zhimulev IF, Belyaeva ES, Vatolina TY, Demakov SA.

Bioessays. 2012 Jun;34(6):498-508. doi: 10.1002/bies.201100142. Epub 2012 Mar 15. Review.

PMID:
22419120
10.

Late replication domains in polytene and non-polytene cells of Drosophila melanogaster.

Belyaeva ES, Goncharov FP, Demakova OV, Kolesnikova TD, Boldyreva LV, Semeshin VF, Zhimulev IF.

PLoS One. 2012;7(1):e30035. doi: 10.1371/journal.pone.0030035. Epub 2012 Jan 10.

11.

Protein composition of interband regions in polytene and cell line chromosomes of Drosophila melanogaster.

Demakov SA, Vatolina TY, Babenko VN, Semeshin VF, Belyaeva ES, Zhimulev IF.

BMC Genomics. 2011 Nov 18;12:566. doi: 10.1186/1471-2164-12-566.

12.

Identical functional organization of nonpolytene and polytene chromosomes in Drosophila melanogaster.

Vatolina TY, Boldyreva LV, Demakova OV, Demakov SA, Kokoza EB, Semeshin VF, Babenko VN, Goncharov FP, Belyaeva ES, Zhimulev IF.

PLoS One. 2011;6(10):e25960. doi: 10.1371/journal.pone.0025960. Epub 2011 Oct 11. Erratum in: PLoS One. 2011;6(11). doi:10.1371/annotation/45b44e2a-c751-418b-bbb7-7023998abdfc.

13.

Induced decondensation of heterochromatin in Drosophila melanogaster polytene chromosomes under condition of ectopic expression of the Supressor of underreplication gene.

Kolesnikova TD, Semeshin VF, Andreyeva EN, Zykov IA, Kokoza EB, Kalashnikova DA, Belyaeva ES, Zhimulev IF.

Fly (Austin). 2011 Jul-Sep;5(3):181-90. Epub 2011 Jul 1.

PMID:
21747232
14.

Gene density profile reveals the marking of late replicated domains in the Drosophila melanogaster genome.

Belyakin SN, Babenko VN, Maksimov DA, Shloma VV, Kvon EZ, Belyaeva ES, Zhimulev IF.

Chromosoma. 2010 Dec;119(6):589-600. doi: 10.1007/s00412-010-0280-y. Epub 2010 Jul 3.

PMID:
20602235
15.

Paucity and preferential suppression of transgenes in late replication domains of the D. melanogaster genome.

Babenko VN, Makunin IV, Brusentsova IV, Belyaeva ES, Maksimov DA, Belyakin SN, Maroy P, Vasil'eva LA, Zhimulev IF.

BMC Genomics. 2010 May 21;11:318. doi: 10.1186/1471-2164-11-318.

16.

Localization and characteristics of DNA underreplication zone in the 75C region of intercalary heterochromatin in Drosophila melanogaster polytene chromosomes.

Andreyenkova NG, Kokoza EB, Semeshin VF, Belyaeva ES, Demakov SA, Pindyurin AV, Andreyeva EN, Volkova EI, Zhimulev IF.

Chromosoma. 2009 Dec;118(6):747-61. doi: 10.1007/s00412-009-0232-6. Epub 2009 Aug 14.

PMID:
19685068
17.

Reversible decondensation of heterochromatin regions of Drosophila melanogaster polytene chromosomes during ectopic expression of the SuUR gene.

Kokoza EB, Kolesnikova TD, Zykov IA, Belyaeva ES, Zhimulev IF.

Dokl Biol Sci. 2009 May-Jun;426:244-6. No abstract available.

PMID:
19650328
18.

Conservation of domain structure in a fast-evolving heterochromatic SUUR protein in drosophilids.

Yurlova AA, Makunin IV, Kolesnikova TD, Posukh OV, Belyaeva ES, Zhimulev IF.

Genetics. 2009 Sep;183(1):119-29. doi: 10.1534/genetics.109.104844. Epub 2009 Jul 13.

19.

Characteristics of molecular-genetic organization of intercalary heterochromatin band 10A1-2 in X chromosome of Drosophila melanogaster.

Babenko VN, Pokholkova GV, Kokoza EB, Andreyenkova NG, Belyakin SN, Belyaeva ES, Zhimulev IF.

Dokl Biochem Biophys. 2009 Jan-Feb;424:27-30. No abstract available.

PMID:
19341102
20.

Local DNA underreplication correlates with accumulation of phosphorylated H2Av in the Drosophila melanogaster polytene chromosomes.

Andreyeva EN, Kolesnikova TD, Belyaeva ES, Glaser RL, Zhimulev IF.

Chromosome Res. 2008;16(6):851-62. doi: 10.1007/s10577-008-1244-4. Epub 2008 Aug 16.

PMID:
18704724
21.

Intercalary heterochromatin in polytene chromosomes of Drosophila melanogaster.

Belyaeva ES, Andreyeva EN, Belyakin SN, Volkova EI, Zhimulev IF.

Chromosoma. 2008 Oct;117(5):411-8. doi: 10.1007/s00412-008-0163-7. Epub 2008 May 20. Review.

PMID:
18491121
22.

Interaction between the Drosophila heterochromatin proteins SUUR and HP1.

Pindyurin AV, Boldyreva LV, Shloma VV, Kolesnikova TD, Pokholkova GV, Andreyeva EN, Kozhevnikova EN, Ivanoschuk IG, Zarutskaya EA, Demakov SA, Gorchakov AA, Belyaeva ES, Zhimulev IF.

J Cell Sci. 2008 May 15;121(Pt 10):1693-703. doi: 10.1242/jcs.018655. Epub 2008 Apr 29.

23.

System for purification of complexes of the Drosophila melanogaster chromosomal protein SUUR.

Posukh OV, Yurlova AA, Belyaeva ES, Zhimulev IF.

Dokl Biochem Biophys. 2007 Sep-Oct;416:274-7. No abstract available.

PMID:
18064831
24.

High-resolution analysis of Drosophila heterochromatin organization using SuUR Su(var)3-9 double mutants.

Andreyeva EN, Kolesnikova TD, Demakova OV, Mendez-Lago M, Pokholkova GV, Belyaeva ES, Rossi F, Dimitri P, Villasante A, Zhimulev IF.

Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12819-24. Epub 2007 Jul 18.

25.

SUUR joins separate subsets of PcG, HP1 and B-type lamin targets in Drosophila.

Pindyurin AV, Moorman C, de Wit E, Belyakin SN, Belyaeva ES, Christophides GK, Kafatos FC, van Steensel B, Zhimulev IF.

J Cell Sci. 2007 Jul 15;120(Pt 14):2344-51.

26.

The SU(VAR)3-9/HP1 complex differentially regulates the compaction state and degree of underreplication of X chromosome pericentric heterochromatin in Drosophila melanogaster.

Demakova OV, Pokholkova GV, Kolesnikova TD, Demakov SA, Andreyeva EN, Belyaeva ES, Zhimulev IF.

Genetics. 2007 Feb;175(2):609-20. Epub 2006 Dec 6.

27.

DNA underreplication in intercalary heterochromatin regions in polytene chromosomes of Drosophila melanogaster correlates with the formation of partial chromosomal aberrations and ectopic pairing.

Belyaeva ES, Demakov SA, Pokholkova GV, Alekseyenko AA, Kolesnikova TD, Zhimulev IF.

Chromosoma. 2006 Oct;115(5):355-66. Epub 2006 Apr 1.

PMID:
16583218
28.

Three distinct chromatin domains in telomere ends of polytene chromosomes in Drosophila melanogaster Tel mutants.

Andreyeva EN, Belyaeva ES, Semeshin VF, Pokholkova GV, Zhimulev IF.

J Cell Sci. 2005 Dec 1;118(Pt 23):5465-77. Epub 2005 Nov 8.

29.

Functional dissection of the Suppressor of UnderReplication protein of Drosophila melanogaster: identification of domains influencing chromosome binding and DNA replication.

Kolesnikova TD, Makunin IV, Volkova EI, Pirrotta V, Belyaeva ES, Zhimulev IF.

Genetica. 2005 Jul;124(2-3):187-200.

PMID:
16134332
30.

Genomic analysis of Drosophila chromosome underreplication reveals a link between replication control and transcriptional territories.

Belyakin SN, Christophides GK, Alekseyenko AA, Kriventseva EV, Belyaeva ES, Nanayev RA, Makunin IV, Kafatos FC, Zhimulev IF.

Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8269-74. Epub 2005 May 31.

31.

Polytene chromosomes: 70 years of genetic research.

Zhimulev IF, Belyaeva ES, Semeshin VF, Koryakov DE, Demakov SA, Demakova OV, Pokholkova GV, Andreyeva EN.

Int Rev Cytol. 2004;241:203-75. Review.

PMID:
15548421
32.

Molecular characterization of the singed wings locus of Drosophila melanogaster.

Schwartz YB, Boykova T, Belyaeva ES, Ashburner M, Zhimulev IF.

BMC Genet. 2004 Jun 9;5:15.

33.

Electron microscopy of polytene chromosomes.

Semeshin VF, Belyaeva ES, Shloma VV, Zhimulev IF.

Methods Mol Biol. 2004;247:305-24. No abstract available.

PMID:
14707355
34.

Effect of the Suppressor of Underreplication (SuUR) gene on position-effect variegation silencing in Drosophila melanogaster.

Belyaeva ES, Boldyreva LV, Volkova EI, Nanayev RA, Alekseyenko AA, Zhimulev IF.

Genetics. 2003 Nov;165(3):1209-20.

35.

Intercalary heterochromatin and genetic silencing.

Zhimulev IF, Belyaeva ES.

Bioessays. 2003 Nov;25(11):1040-51. Review.

PMID:
14579245
36.

Intercalary heterochromatin in Drosophila melanogaster polytene chromosomes and the problem of genetic silencing.

Zhimulev IF, Belyaeva ES, Makunin IV, Pirrotta V, Semeshin VF, Alekseyenko AA, Belyakin SN, Volkova EI, Koryakov DE, Andreyeva EN, Demakova OV, Kotlikova IV, Kolesnikova TD, Boldyreva LV, Nanayev RA.

Genetica. 2003 Mar;117(2-3):259-70.

PMID:
12723705
37.

Influence of the SuUR gene on intercalary heterochromatin in Drosophila melanogaster polytene chromosomes.

Zhimulev IF, Belyaeva ES, Makunin IV, Pirrotta V, Volkova EI, Alekseyenko AA, Andreyeva EN, Makarevich GF, Boldyreva LV, Nanayev RA, Demakova OV.

Chromosoma. 2003 Mar;111(6):377-98. Epub 2002 Nov 28.

PMID:
12644953
38.
39.

Microdissection and sequence analysis of pericentric heterochromatin from the Drosophila melanogastermutant Suppressor of Underreplication.

Moshkin YM, Belyakin SN, Rubtsov NB, Kokoza EB, Alekseyenko AA, Volkova EI, Belyaeva ES, Makunin IV, Spierer P, Zhimulev IF.

Chromosoma. 2002 Jul;111(2):114-25. Epub 2002 Apr 16.

PMID:
12111334
40.

Dosage compensation and intercalary heterochromatin in X chromosomes of Drosophila melanogaster.

Alekseyenko AA, Demakova OV, Belyaeva ES, Makarevich GF, Kotlikova IV, Nöthiger R, Zhimulev IF.

Chromosoma. 2002 Jul;111(2):106-13. Epub 2002 Apr 17.

PMID:
12111333
41.

The Drosophila suppressor of underreplication protein binds to late-replicating regions of polytene chromosomes.

Makunin IV, Volkova EI, Belyaeva ES, Nabirochkina EN, Pirrotta V, Zhimulev IF.

Genetics. 2002 Mar;160(3):1023-34.

42.

The bithorax complex of Drosophila melanogaster: Underreplication and morphology in polytene chromosomes.

Moshkin YM, Alekseyenko AA, Semeshin VF, Spierer A, Spierer P, Makarevich GF, Belyaeva ES, Zhimulev IF.

Proc Natl Acad Sci U S A. 2001 Jan 16;98(2):570-4. Epub 2001 Jan 2.

43.

The transposon A(R)4-24P[white, rosy] in Drosophila melanogaster is subject to position-effect variegation at a non-centromeric insertion site.

Balasov ML, Belyaeva ES, Shestopal SA, Makunin IV, Zhimulev IF.

Mol Gen Genet. 2000 Sep;264(1-2):105-11.

PMID:
11016839
44.

Su(UR)ES: a gene suppressing DNA underreplication in intercalary and pericentric heterochromatin of Drosophila melanogaster polytene chromosomes.

Belyaeva ES, Zhimulev IF, Volkova EI, Alekseyenko AA, Moshkin YM, Koryakov DE.

Proc Natl Acad Sci U S A. 1998 Jun 23;95(13):7532-7.

45.

Cytological study of the brown dominant position effect.

Belyaeva ES, Koryakov DE, Pokholkova GV, Demakova OV, Zhimulev IF.

Chromosoma. 1997 Jul;106(2):124-32.

PMID:
9215562
46.

Molecular characterization of the deep orange (dor) gene of Drosophila melanogaster.

Shestopal SA, Makunin IV, Belyaeva ES, Ashburner M, Zhimulev IF.

Mol Gen Genet. 1997 Feb 20;253(5):642-8.

PMID:
9065698
48.

Alpha and beta heterochromatin in polytene chromosome 2 of Drosophila melanogaster.

Koryakov DE, Belyaeva ES, Alekseyenko AA, Zhimulev IF.

Chromosoma. 1996 Dec;105(5):310-9.

PMID:
8939824
49.

Molecular and cytogenetical characterization of the 10A1-2 band and adjoining region in the Drosophila melanogaster polytene X chromosome.

Kozlova Tu, Semeshin VF, Tretyakova IV, Kokoza EB, Pirrotta V, Grafodatskaya VE, Belyaeva ES, Zhimulev IF.

Genetics. 1994 Mar;136(3):1063-73.

50.

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