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Insight into the Mechanism of Phenylacetate Decarboxylase (PhdB), a Toluene-Producing Glycyl Radical Enzyme.

Rodrigues AV, Tantillo DJ, Mukhopadhyay A, Keasling JD, Beller HR.

Chembiochem. 2019 Sep 11. doi: 10.1002/cbic.201900560. [Epub ahead of print]


Optimization of the IPP-bypass mevalonate pathway and fed-batch fermentation for the production of isoprenol in Escherichia coli.

Kang A, Mendez-Perez D, Goh EB, Baidoo EEK, Benites VT, Beller HR, Keasling JD, Adams PD, Mukhopadhyay A, Lee TS.

Metab Eng. 2019 Dec;56:85-96. doi: 10.1016/j.ymben.2019.09.003. Epub 2019 Sep 6.


Paired RNA Radiocarbon and Sequencing Analyses Indicate the Importance of Autotrophy in a Shallow Alluvial Aquifer.

Mailloux BJ, Kim C, Kichuk T, Nguyen K, Precht C, Wang S, Jewell TNM, Karaoz U, Brodie EL, Williams KH, Beller HR, Buchholz BA.

Sci Rep. 2019 Jul 17;9(1):10370. doi: 10.1038/s41598-019-46663-1.


Methyl Ketones from Municipal Solid Waste Blends by One-Pot Ionic-Liquid Pretreatment, Saccharification, and Fermentation.

Yan J, Liang L, He Q, Li C, Xu F, Sun J, Goh EB, Konda NVSNM, Beller HR, Simmons BA, Pray TR, Thompson VS, Singh S, Sun N.

ChemSusChem. 2019 Sep 20;12(18):4313-4322. doi: 10.1002/cssc.201901084. Epub 2019 Aug 23.


Use of carbon stable isotopes to monitor biostimulation and electron donor fate in chromium-contaminated groundwater.

Bill M, Conrad ME, Faybishenko B, Larsen JT, Geller JT, Borglin SE, Beller HR.

Chemosphere. 2019 Nov;235:440-446. doi: 10.1016/j.chemosphere.2019.06.056. Epub 2019 Jun 14.


Lessons from Two Design-Build-Test-Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning.

Opgenorth P, Costello Z, Okada T, Goyal G, Chen Y, Gin J, Benites V, de Raad M, Northen TR, Deng K, Deutsch S, Baidoo EEK, Petzold CJ, Hillson NJ, Garcia Martin H, Beller HR.

ACS Synth Biol. 2019 Jun 21;8(6):1337-1351. doi: 10.1021/acssynbio.9b00020. Epub 2019 May 24.


Methyl ketone production by Pseudomonas putida is enhanced by plant-derived amino acids.

Dong J, Chen Y, Benites VT, Baidoo EEK, Petzold CJ, Beller HR, Eudes A, Scheller HV, Adams PD, Mukhopadhyay A, Simmons BA, Singer SW.

Biotechnol Bioeng. 2019 Aug;116(8):1909-1922. doi: 10.1002/bit.26995. Epub 2019 Apr 29.


Discovery of enzymes for toluene synthesis from anoxic microbial communities.

Beller HR, Rodrigues AV, Zargar K, Wu YW, Saini AK, Saville RM, Pereira JH, Adams PD, Tringe SG, Petzold CJ, Keasling JD.

Nat Chem Biol. 2018 May;14(5):451-457. doi: 10.1038/s41589-018-0017-4. Epub 2018 Mar 19.


Improving methyl ketone production in Escherichia coli by heterologous expression of NADH-dependent FabG.

Goh EB, Chen Y, Petzold CJ, Keasling JD, Beller HR.

Biotechnol Bioeng. 2018 May;115(5):1161-1172. doi: 10.1002/bit.26558. Epub 2018 Mar 1.


Engineering E. coli for simultaneous glucose-xylose utilization during methyl ketone production.

Wang X, Goh EB, Beller HR.

Microb Cell Fact. 2018 Jan 27;17(1):12. doi: 10.1186/s12934-018-0862-6.


Reoxidation of Chromium(III) Products Formed under Different Biogeochemical Regimes.

Varadharajan C, Beller HR, Bill M, Brodie EL, Conrad ME, Han R, Irwin C, Larsen JT, Lim HC, Molins S, Steefel CI, van Hise A, Yang L, Nico PS.

Environ Sci Technol. 2017 May 2;51(9):4918-4927. doi: 10.1021/acs.est.6b06044. Epub 2017 Apr 18.


Water Table Dynamics and Biogeochemical Cycling in a Shallow, Variably-Saturated Floodplain.

Yabusaki SB, Wilkins MJ, Fang Y, Williams KH, Arora B, Bargar J, Beller HR, Bouskill NJ, Brodie EL, Christensen JN, Conrad ME, Danczak RE, King E, Soltanian MR, Spycher NF, Steefel CI, Tokunaga TK, Versteeg R, Waichler SR, Wainwright HM.

Environ Sci Technol. 2017 Mar 21;51(6):3307-3317. doi: 10.1021/acs.est.6b04873. Epub 2017 Mar 7.


Metatranscriptomic Analysis Reveals Unexpectedly Diverse Microbial Metabolism in a Biogeochemical Hot Spot in an Alluvial Aquifer.

Jewell TN, Karaoz U, Bill M, Chakraborty R, Brodie EL, Williams KH, Beller HR.

Front Microbiol. 2017 Jan 25;8:40. doi: 10.3389/fmicb.2017.00040. eCollection 2017.


Monoterpene 'thermometer' of tropical forest-atmosphere response to climate warming.

Jardine KJ, Jardine AB, Holm JA, Lombardozzi DL, Negron-Juarez RI, Martin ST, Beller HR, Gimenez BO, Higuchi N, Chambers JQ.

Plant Cell Environ. 2017 Mar;40(3):441-452. doi: 10.1111/pce.12879. Epub 2017 Jan 27.


In vitro Characterization of Phenylacetate Decarboxylase, a Novel Enzyme Catalyzing Toluene Biosynthesis in an Anaerobic Microbial Community.

Zargar K, Saville R, Phelan RM, Tringe SG, Petzold CJ, Keasling JD, Beller HR.

Sci Rep. 2016 Aug 10;6:31362. doi: 10.1038/srep31362.


Enhanced fatty acid production in engineered chemolithoautotrophic bacteria using reduced sulfur compounds as energy sources.

Beller HR, Zhou P, Jewell TNM, Goh EB, Keasling JD.

Metab Eng Commun. 2016 Jul 5;3:211-215. doi: 10.1016/j.meteno.2016.07.001. eCollection 2016 Dec.


Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli.

Javidpour P, Deutsch S, Mutalik VK, Hillson NJ, Petzold CJ, Keasling JD, Beller HR.

PLoS One. 2016 Mar 14;11(3):e0151087. doi: 10.1371/journal.pone.0151087. eCollection 2016.


Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer.

Jewell TN, Karaoz U, Brodie EL, Williams KH, Beller HR.

ISME J. 2016 Sep;10(9):2106-17. doi: 10.1038/ismej.2016.25. Epub 2016 Mar 4.


Natural products as biofuels and bio-based chemicals: fatty acids and isoprenoids.

Beller HR, Lee TS, Katz L.

Nat Prod Rep. 2015 Sep 23;32(10):1508-26. doi: 10.1039/c5np00068h. Review.


Characterization of Chromium Bioremediation Products in Flow-Through Column Sediments Using Micro-X-ray Fluorescence and X-ray Absorption Spectroscopy.

Varadharajan C, Han R, Beller HR, Yang L, Marcus MA, Michel M, Nico PS.

J Environ Qual. 2015 May;44(3):729-38. doi: 10.2134/jeq2014.08.0329.


Substantial improvements in methyl ketone production in E. coli and insights on the pathway from in vitro studies.

Goh EB, Baidoo EEK, Burd H, Lee TS, Keasling JD, Beller HR.

Metab Eng. 2014 Nov;26:67-76. doi: 10.1016/j.ymben.2014.09.003. Epub 2014 Sep 18.


Divergent aquifer biogeochemical systems converge on similar and unexpected Cr(VI) reduction products.

Beller HR, Yang L, Varadharajan C, Han R, Lim HC, Karaoz U, Molins S, Marcus MA, Brodie EL, Steefel CI, Nico PS.

Environ Sci Technol. 2014 Sep 16;48(18):10699-706. doi: 10.1021/es5016982. Epub 2014 Aug 13.


Development of a broad-host synthetic biology toolbox for Ralstonia eutropha and its application to engineering hydrocarbon biofuel production.

Bi C, Su P, Müller J, Yeh YC, Chhabra SR, Beller HR, Singer SW, Hillson NJ.

Microb Cell Fact. 2013 Nov 13;12:107. doi: 10.1186/1475-2859-12-107.


Biochemical and structural studies of NADH-dependent FabG used to increase the bacterial production of fatty acids under anaerobic conditions.

Javidpour P, Pereira JH, Goh EB, McAndrew RP, Ma SM, Friedland GD, Keasling JD, Chhabra SR, Adams PD, Beller HR.

Appl Environ Microbiol. 2014 Jan;80(2):497-505. doi: 10.1128/AEM.03194-13. Epub 2013 Nov 8.


Genome-enabled studies of anaerobic, nitrate-dependent iron oxidation in the chemolithoautotrophic bacterium Thiobacillus denitrificans.

Beller HR, Zhou P, Legler TC, Chakicherla A, Kane S, Letain TE, A O'Day P.

Front Microbiol. 2013 Aug 27;4:249. doi: 10.3389/fmicb.2013.00249. eCollection 2013.


Engineering of Ralstonia eutropha H16 for autotrophic and heterotrophic production of methyl ketones.

Müller J, MacEachran D, Burd H, Sathitsuksanoh N, Bi C, Yeh YC, Lee TS, Hillson NJ, Chhabra SR, Singer SW, Beller HR.

Appl Environ Microbiol. 2013 Jul;79(14):4433-9. doi: 10.1128/AEM.00973-13. Epub 2013 May 17.


Functionalizing bacterial cell surfaces with a phage protein.

Yeh YC, Müller J, Bi C, Hillson NJ, Beller HR, Chhabra SR, Singer SW.

Chem Commun (Camb). 2013 Jan 30;49(9):910-2. doi: 10.1039/c2cc37883c.


Genomic and physiological characterization of the chromate-reducing, aquifer-derived Firmicute Pelosinus sp. strain HCF1.

Beller HR, Han R, Karaoz U, Lim H, Brodie EL.

Appl Environ Microbiol. 2013 Jan;79(1):63-73. doi: 10.1128/AEM.02496-12. Epub 2012 Oct 12.


Structure of FabH and factors affecting the distribution of branched fatty acids in Micrococcus luteus.

Pereira JH, Goh EB, Keasling JD, Beller HR, Adams PD.

Acta Crystallogr D Biol Crystallogr. 2012 Oct;68(Pt 10):1320-8. Epub 2012 Sep 18.


Genetic manipulation of the obligate chemolithoautotrophic bacterium Thiobacillus denitrificans.

Beller HR, Legler TC, Kane SR.

Methods Mol Biol. 2012;881:99-136. doi: 10.1007/978-1-61779-827-6_5.


Differential isotopic fractionation during Cr(VI) reduction by an aquifer-derived bacterium under aerobic versus denitrifying conditions.

Han R, Qin L, Brown ST, Christensen JN, Beller HR.

Appl Environ Microbiol. 2012 Apr;78(7):2462-4. doi: 10.1128/AEM.07225-11. Epub 2012 Jan 27.


Complete genome sequence of Tolumonas auensis type strain (TA 4).

Chertkov O, Copeland A, Lucas S, Lapidus A, Berry KW, Detter JC, Del Rio TG, Hammon N, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin L, Han C, Tapia R, Saunders E, Schmutz J, Brettin T, Larimer F, Land M, Hauser L, Spring S, Rohde M, Kyrpides NC, Ivanova N, Göker M, Beller HR, Klenk HP, Woyke T.

Stand Genomic Sci. 2011 Oct 15;5(1):112-20. doi: 10.4056/sigs.2184986. Epub 2011 Sep 23.


Engineering of bacterial methyl ketone synthesis for biofuels.

Goh EB, Baidoo EE, Keasling JD, Beller HR.

Appl Environ Microbiol. 2012 Jan;78(1):70-80. doi: 10.1128/AEM.06785-11. Epub 2011 Oct 28.


Generalized schemes for high-throughput manipulation of the Desulfovibrio vulgaris genome.

Chhabra SR, Butland G, Elias DA, Chandonia JM, Fok OY, Juba TR, Gorur A, Allen S, Leung CM, Keller KL, Reveco S, Zane GM, Semkiw E, Prathapam R, Gold B, Singer M, Ouellet M, Szakal ED, Jorgens D, Price MN, Witkowska HE, Beller HR, Arkin AP, Hazen TC, Biggin MD, Auer M, Wall JD, Keasling JD.

Appl Environ Microbiol. 2011 Nov;77(21):7595-604. doi: 10.1128/AEM.05495-11. Epub 2011 Sep 9.


PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.

DeAngelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME, Tom LM, Andersen GL.

Appl Environ Microbiol. 2011 Sep;77(18):6313-22. doi: 10.1128/AEM.05262-11. Epub 2011 Jul 15.


Definitive alkene identification needed for in vitro studies with ole (olefin biosynthesis) proteins.

Beller HR, Goh EB, Keasling JD.

J Biol Chem. 2011 Jul 1;286(26):le11; author reply le12-3. doi: 10.1074/jbc.L110.216127. No abstract available.


Physiological and transcriptional studies of Cr(VI) reduction under aerobic and denitrifying conditions by an aquifer-derived pseudomonad.

Han R, Geller JT, Yang L, Brodie EL, Chakraborty R, Larsen JT, Beller HR.

Environ Sci Technol. 2010 Oct 1;44(19):7491-7. doi: 10.1021/es101152r.


Genes involved in long-chain alkene biosynthesis in Micrococcus luteus.

Beller HR, Goh EB, Keasling JD.

Appl Environ Microbiol. 2010 Feb;76(4):1212-23. doi: 10.1128/AEM.02312-09. Epub 2009 Dec 28.


Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium.

Young M, Artsatbanov V, Beller HR, Chandra G, Chater KF, Dover LG, Goh EB, Kahan T, Kaprelyants AS, Kyrpides N, Lapidus A, Lowry SR, Lykidis A, Mahillon J, Markowitz V, Mavromatis K, Mukamolova GV, Oren A, Rokem JS, Smith MC, Young DI, Greenblatt CL.

J Bacteriol. 2010 Feb;192(3):841-60. doi: 10.1128/JB.01254-09. Epub 2009 Nov 30.


Identification of c-type cytochromes involved in anaerobic, bacterial U(IV) oxidation.

Beller HR, Legler TC, Bourguet F, Letain TE, Kane SR, Coleman MA.

Biodegradation. 2009 Feb;20(1):45-53. doi: 10.1007/s10532-008-9198-y. Epub 2008 May 11.


Identification of intermediates formed during anaerobic benzene degradation by an iron-reducing enrichment culture.

Kunapuli U, Griebler C, Beller HR, Meckenstock RU.

Environ Microbiol. 2008 Jul;10(7):1703-12. doi: 10.1111/j.1462-2920.2008.01588.x. Epub 2008 Apr 10.


Development of a genetic system for the chemolithoautotrophic bacterium Thiobacillus denitrificans.

Letain TE, Kane SR, Legler TC, Salazar EP, Agron PG, Beller HR.

Appl Environ Microbiol. 2007 May;73(10):3265-71. Epub 2007 Mar 2.


The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.

Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.

J Bacteriol. 2006 Feb;188(4):1473-88.


Analysis of anaerobic BTX biodegradation in a subarctic aquifer using isotopes and benzylsuccinates.

McKelvie JR, Lindstrom JE, Beller HR, Richmond SA, Sherwood Lollar B.

J Contam Hydrol. 2005 Dec;81(1-4):167-86. Epub 2005 Oct 24.


Metabolites detected during biodegradation of 13C6-benzene in nitrate-reducing and methanogenic enrichment cultures.

Ulrich AC, Beller HR, Edwards EA.

Environ Sci Technol. 2005 Sep 1;39(17):6681-91.


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