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Items: 1 to 50 of 59

1.

Switching Software in Science: Motivations, Challenges, and Solutions.

Wessel JR, Gorgolewski KJ, Bellec P.

Trends Cogn Sci. 2019 Apr;23(4):265-267. doi: 10.1016/j.tics.2019.01.004. Epub 2019 Jan 31.

PMID:
30712996
2.

The Canadian Dementia Imaging Protocol: Harmonizing National Cohorts.

Duchesne S, Chouinard I, Potvin O, Fonov VS, Khademi A, Bartha R, Bellec P, Collins DL, Descoteaux M, Hoge R, McCreary CR, Ramirez J, Scott CJM, Smith EE, Strother SC, Black SE; CIMA-Q group and the CCNA group.

J Magn Reson Imaging. 2019 Feb;49(2):456-465. doi: 10.1002/jmri.26197. Epub 2018 Sep 17.

PMID:
30635988
3.

Supervised machine learning quality control for magnetic resonance artifacts in neonatal data sets.

Ding Y, Suffren S, Bellec P, Lodygensky GA.

Hum Brain Mapp. 2019 Mar;40(4):1290-1297. doi: 10.1002/hbm.24449. Epub 2018 Nov 22.

PMID:
30467922
4.

Data-driven approaches for tau-PET imaging biomarkers in Alzheimer's disease.

Vogel JW, Mattsson N, Iturria-Medina Y, Strandberg OT, Schöll M, Dansereau C, Villeneuve S, van der Flier WM, Scheltens P, Bellec P, Evans AC, Hansson O, Ossenkoppele R; Alzheimer's Disease Neuroimaging Initiative; Swedish BioFINDER Study.

Hum Brain Mapp. 2019 Feb 1;40(2):638-651. doi: 10.1002/hbm.24401. Epub 2018 Oct 19.

PMID:
30368979
5.

Subjective Cognitive Decline Is Associated With Altered Default Mode Network Connectivity in Individuals With a Family History of Alzheimer's Disease.

Verfaillie SCJ, Pichet Binette A, Vachon-Presseau E, Tabrizi S, Savard M, Bellec P, Ossenkoppele R, Scheltens P, van der Flier WM, Breitner JCS, Villeneuve S; PREVENT-AD Research Group.

Biol Psychiatry Cogn Neurosci Neuroimaging. 2018 May;3(5):463-472. doi: 10.1016/j.bpsc.2017.11.012. Epub 2017 Dec 14.

PMID:
29735156
6.

Boutiques: a flexible framework to integrate command-line applications in computing platforms.

Glatard T, Kiar G, Aumentado-Armstrong T, Beck N, Bellec P, Bernard R, Bonnet A, Brown ST, Camarasu-Pop S, Cervenansky F, Das S, Ferreira da Silva R, Flandin G, Girard P, Gorgolewski KJ, Guttmann CRG, Hayot-Sasson V, Quirion PO, Rioux P, Rousseau MÉ, Evans AC.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy016.

7.

Brain properties predict proximity to symptom onset in sporadic Alzheimer's disease.

Vogel JW, Vachon-Presseau E, Pichet Binette A, Tam A, Orban P, La Joie R, Savard M, Picard C, Poirier J, Bellec P, Breitner JCS, Villeneuve S; Alzheimer’s Disease Neuroimaging Initiative* and the PREVENT-AD Research Group.

Brain. 2018 Jun 1;141(6):1871-1883. doi: 10.1093/brain/awy093.

8.

Changes in structural network are associated with cortical demyelination in early multiple sclerosis.

Mangeat G, Badji A, Ouellette R, Treaba CA, Herranz E, Granberg T, Louapre C, Stikov N, Sloane JA, Bellec P, Mainero C, Cohen-Adad J.

Hum Brain Mapp. 2018 May;39(5):2133-2146. doi: 10.1002/hbm.23993. Epub 2018 Feb 6.

PMID:
29411457
9.

Neuroimage special issue on brain segmentation and parcellation - Editorial.

Craddock RC, Bellec P, Jbabdi S.

Neuroimage. 2018 Apr 15;170:1-4. doi: 10.1016/j.neuroimage.2017.11.063. Epub 2017 Dec 2. No abstract available.

PMID:
29197642
10.

Detecting stable individual differences in the functional organization of the human basal ganglia.

Garcia-Garcia M, Nikolaidis A, Bellec P, Craddock RC, Cheung B, Castellanos FX, Milham MP.

Neuroimage. 2018 Apr 15;170:68-82. doi: 10.1016/j.neuroimage.2017.07.029. Epub 2017 Jul 21.

PMID:
28739120
11.

Multisite generalizability of schizophrenia diagnosis classification based on functional brain connectivity.

Orban P, Dansereau C, Desbois L, Mongeau-Pérusse V, Giguère CÉ, Nguyen H, Mendrek A, Stip E, Bellec P.

Schizophr Res. 2018 Feb;192:167-171. doi: 10.1016/j.schres.2017.05.027. Epub 2017 Aug 24.

PMID:
28601499
12.

Resting-state network dysfunction in Alzheimer's disease: A systematic review and meta-analysis.

Badhwar A, Tam A, Dansereau C, Orban P, Hoffstaedter F, Bellec P.

Alzheimers Dement (Amst). 2017 Apr 18;8:73-85. doi: 10.1016/j.dadm.2017.03.007. eCollection 2017.

13.

Application of calibrated fMRI in Alzheimer's disease.

Lajoie I, Nugent S, Debacker C, Dyson K, Tancredi FB, Badhwar A, Belleville S, Deschaintre Y, Bellec P, Doyon J, Bocti C, Gauthier S, Arnold D, Kergoat MJ, Chertkow H, Monchi O, Hoge RD.

Neuroimage Clin. 2017 May 16;15:348-358. doi: 10.1016/j.nicl.2017.05.009. eCollection 2017.

14.

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.

Gorgolewski KJ, Alfaro-Almagro F, Auer T, Bellec P, Capotă M, Chakravarty MM, Churchill NW, Cohen AL, Craddock RC, Devenyi GA, Eklund A, Esteban O, Flandin G, Ghosh SS, Guntupalli JS, Jenkinson M, Keshavan A, Kiar G, Liem F, Raamana PR, Raffelt D, Steele CJ, Quirion PO, Smith RE, Strother SC, Varoquaux G, Wang Y, Yarkoni T, Poldrack RA.

PLoS Comput Biol. 2017 Mar 9;13(3):e1005209. doi: 10.1371/journal.pcbi.1005209. eCollection 2017 Mar.

15.

Statistical power and prediction accuracy in multisite resting-state fMRI connectivity.

Dansereau C, Benhajali Y, Risterucci C, Pich EM, Orban P, Arnold D, Bellec P.

Neuroimage. 2017 Apr 1;149:220-232. doi: 10.1016/j.neuroimage.2017.01.072. Epub 2017 Feb 2.

PMID:
28161310
16.

Maximum Pseudolikelihood Estimation for Model-Based Clustering of Time Series Data.

Nguyen HD, McLachlan GJ, Orban P, Bellec P, Janke AL.

Neural Comput. 2017 Apr;29(4):990-1020. doi: 10.1162/NECO_a_00938. Epub 2017 Jan 17.

PMID:
28095191
17.

State-dependent modulation of functional connectivity in early blind individuals.

Pelland M, Orban P, Dansereau C, Lepore F, Bellec P, Collignon O.

Neuroimage. 2017 Feb 15;147:532-541. doi: 10.1016/j.neuroimage.2016.12.053. Epub 2016 Dec 21.

PMID:
28011254
18.

A dataset of multiresolution functional brain parcellations in an elderly population with no or mild cognitive impairment.

Tam A, Dansereau C, Badhwar A, Orban P, Belleville S, Chertkow H, Dagher A, Hanganu A, Monchi O, Rosa-Neto P, Shmuel A, Breitner J, Bellec P; Alzheimer׳s Disease Neuroimaging Initiative.

Data Brief. 2016 Nov 18;9:1122-1129. eCollection 2016 Dec.

19.

Simulation and Validation in Brain Image Analysis.

Tohka J, Bellec P, Grova C, Reilhac A.

Comput Intell Neurosci. 2016;2016:1041058. doi: 10.1155/2016/1041058. Epub 2016 Jun 28. No abstract available.

20.

The Neuro Bureau ADHD-200 Preprocessed repository.

Bellec P, Chu C, Chouinard-Decorte F, Benhajali Y, Margulies DS, Craddock RC.

Neuroimage. 2017 Jan;144(Pt B):275-286. doi: 10.1016/j.neuroimage.2016.06.034. Epub 2016 Jul 15.

PMID:
27423255
21.

Altered brain connectivity in patients with schizophrenia is consistent across cognitive contexts.

Orban P, Desseilles M, Mendrek A, Bourque J, Bellec P, Stip E.

J Psychiatry Neurosci. 2017 Jan;42(1):17-26.

22.

Brainhack: a collaborative workshop for the open neuroscience community.

Cameron Craddock R, S Margulies D, Bellec P, Nolan Nichols B, Alcauter S, A Barrios F, Burnod Y, J Cannistraci C, Cohen-Adad J, De Leener B, Dery S, Downar J, Dunlop K, R Franco A, Seligman Froehlich C, J Gerber A, S Ghosh S, J Grabowski T, Hill S, Sólon Heinsfeld A, Matthew Hutchison R, Kundu P, R Laird A, Liew SL, J Lurie D, G McLaren D, Meneguzzi F, Mennes M, Mesmoudi S, O'Connor D, H Pasaye E, Peltier S, Poline JB, Prasad G, Fraga Pereira R, Quirion PO, Rokem A, S Saad Z, Shi Y, C Strother S, Toro R, Q Uddin L, D Van Horn J, W Van Meter J, C Welsh R, Xu T.

Gigascience. 2016 Mar 31;5:16. doi: 10.1186/s13742-016-0121-x. eCollection 2016. Review.

23.

Markers of cognitive decline in PD: The case for heterogeneity.

Monchi O, Hanganu A, Bellec P.

Parkinsonism Relat Disord. 2016 Mar;24:8-14. doi: 10.1016/j.parkreldis.2016.01.002. Epub 2016 Jan 7. Review.

PMID:
26774536
24.

Common Effects of Amnestic Mild Cognitive Impairment on Resting-State Connectivity Across Four Independent Studies.

Tam A, Dansereau C, Badhwar A, Orban P, Belleville S, Chertkow H, Dagher A, Hanganu A, Monchi O, Rosa-Neto P, Shmuel A, Wang S, Breitner J, Bellec P; Alzheimer's Disease Neuroimaging Initiative.

Front Aging Neurosci. 2015 Dec 24;7:242. doi: 10.3389/fnagi.2015.00242. eCollection 2015.

25.

Subdivision of Broca's region based on individual-level functional connectivity.

Jakobsen E, Böttger J, Bellec P, Geyer S, Rübsamen R, Petrides M, Margulies DS.

Eur J Neurosci. 2016 Feb;43(4):561-71. doi: 10.1111/ejn.13140.

PMID:
26613367
26.

A cross-modal, cross-species comparison of connectivity measures in the primate brain.

Reid AT, Lewis J, Bezgin G, Khundrakpam B, Eickhoff SB, McIntosh AR, Bellec P, Evans AC.

Neuroimage. 2016 Jan 15;125:311-331. doi: 10.1016/j.neuroimage.2015.10.057. Epub 2015 Oct 26.

PMID:
26515902
27.

Test-retest resting-state fMRI in healthy elderly persons with a family history of Alzheimer's disease.

Orban P, Madjar C, Savard M, Dansereau C, Tam A, Das S, Evans AC, Rosa-Neto P, Breitner JC, Bellec P; PREVENT-AD Research Group.

Sci Data. 2015 Oct 13;2:150043. doi: 10.1038/sdata.2015.43. eCollection 2015.

28.

A Bayesian Alternative to Mutual Information for the Hierarchical Clustering of Dependent Random Variables.

Marrelec G, Messé A, Bellec P.

PLoS One. 2015 Sep 25;10(9):e0137278. doi: 10.1371/journal.pone.0137278. eCollection 2015.

29.

Impact of the resolution of brain parcels on connectome-wide association studies in fMRI.

Bellec P, Benhajali Y, Carbonell F, Dansereau C, Albouy G, Pelland M, Craddock C, Collignon O, Doyon J, Stip E, Orban P.

Neuroimage. 2015 Dec;123:212-28. doi: 10.1016/j.neuroimage.2015.07.071. Epub 2015 Aug 1.

PMID:
26241681
30.

Detection of abnormal resting-state networks in individual patients suffering from focal epilepsy: an initial step toward individual connectivity assessment.

Dansereau CL, Bellec P, Lee K, Pittau F, Gotman J, Grova C.

Front Neurosci. 2014 Dec 23;8:419. doi: 10.3389/fnins.2014.00419. eCollection 2014.

31.

Off-line consolidation of motor sequence learning results in greater integration within a cortico-striatal functional network.

Debas K, Carrier J, Barakat M, Marrelec G, Bellec P, Hadj Tahar A, Karni A, Ungerleider LG, Benali H, Doyon J.

Neuroimage. 2014 Oct 1;99:50-8. doi: 10.1016/j.neuroimage.2014.05.022. Epub 2014 May 17.

PMID:
24844748
32.

Heritable changes in regional cortical thickness with age.

Chouinard-Decorte F, McKay DR, Reid A, Khundrakpam B, Zhao L, Karama S, Rioux P, Sprooten E, Knowles E, Kent JW Jr, Curran JE, Göring HH, Dyer TD, Olvera RL, Kochunov P, Duggirala R, Fox PT, Almasy L, Blangero J, Bellec P, Evans AC, Glahn DC.

Brain Imaging Behav. 2014 Jun;8(2):208-16. doi: 10.1007/s11682-014-9296-x. Epub 2014 Apr 22.

33.

The Richness of Task-Evoked Hemodynamic Responses Defines a Pseudohierarchy of Functionally Meaningful Brain Networks.

Orban P, Doyon J, Petrides M, Mennes M, Hoge R, Bellec P.

Cereb Cortex. 2015 Sep;25(9):2658-69. doi: 10.1093/cercor/bhu064. Epub 2014 Apr 11.

34.

Resting state executive control network adaptations in amnestic mild cognitive impairment.

Wu L, Soder RB, Schoemaker D, Carbonnell F, Sziklas V, Rowley J, Mohades S, Fonov V, Bellec P, Dagher A, Shmuel A, Jia J, Gauthier S, Rosa-Neto P.

J Alzheimers Dis. 2014;40(4):993-1004. doi: 10.3233/JAD-131574.

PMID:
24583406
35.

Imaging of an inflammatory injury in the newborn rat brain with photoacoustic tomography.

Guevara E, Berti R, Londono I, Xie N, Bellec P, Lesage F, Lodygensky GA.

PLoS One. 2013 Dec 26;8(12):e83045. doi: 10.1371/journal.pone.0083045. eCollection 2013.

36.

An open science resource for establishing reliability and reproducibility in functional connectomics.

Zuo XN, Anderson JS, Bellec P, Birn RM, Biswal BB, Blautzik J, Breitner JC, Buckner RL, Calhoun VD, Castellanos FX, Chen A, Chen B, Chen J, Chen X, Colcombe SJ, Courtney W, Craddock RC, Di Martino A, Dong HM, Fu X, Gong Q, Gorgolewski KJ, Han Y, He Y, He Y, Ho E, Holmes A, Hou XH, Huckins J, Jiang T, Jiang Y, Kelley W, Kelly C, King M, LaConte SM, Lainhart JE, Lei X, Li HJ, Li K, Li K, Lin Q, Liu D, Liu J, Liu X, Liu Y, Lu G, Lu J, Luna B, Luo J, Lurie D, Mao Y, Margulies DS, Mayer AR, Meindl T, Meyerand ME, Nan W, Nielsen JA, O'Connor D, Paulsen D, Prabhakaran V, Qi Z, Qiu J, Shao C, Shehzad Z, Tang W, Villringer A, Wang H, Wang K, Wei D, Wei GX, Weng XC, Wu X, Xu T, Yang N, Yang Z, Zang YF, Zhang L, Zhang Q, Zhang Z, Zhang Z, Zhao K, Zhen Z, Zhou Y, Zhu XT, Milham MP.

Sci Data. 2014 Dec 9;1:140049. doi: 10.1038/sdata.2014.49. eCollection 2014.

37.

Quantification of the impact of a confounding variable on functional connectivity confirms anti-correlated networks in the resting-state.

Carbonell F, Bellec P, Shmuel A.

Neuroimage. 2014 Feb 1;86:343-53. doi: 10.1016/j.neuroimage.2013.10.013. Epub 2013 Oct 12.

PMID:
24128734
38.

Age-related differences in test-retest reliability in resting-state brain functional connectivity.

Song J, Desphande AS, Meier TB, Tudorascu DL, Vergun S, Nair VA, Biswal BB, Meyerand ME, Birn RM, Bellec P, Prabhakaran V.

PLoS One. 2012;7(12):e49847. doi: 10.1371/journal.pone.0049847. Epub 2012 Dec 5.

39.

Age dependence of hemodynamic response characteristics in human functional magnetic resonance imaging.

Gauthier CJ, Madjar C, Desjardins-Crépeau L, Bellec P, Bherer L, Hoge RD.

Neurobiol Aging. 2013 May;34(5):1469-85. doi: 10.1016/j.neurobiolaging.2012.11.002. Epub 2012 Dec 6.

PMID:
23218565
40.

Changes in resting-state functionally connected parietofrontal networks after videogame practice.

Martínez K, Solana AB, Burgaleta M, Hernández-Tamames JA, Alvarez-Linera J, Román FJ, Alfayate E, Privado J, Escorial S, Quiroga MA, Karama S, Bellec P, Colom R.

Hum Brain Mapp. 2013 Dec;34(12):3143-57. doi: 10.1002/hbm.22129. Epub 2012 Jul 17.

PMID:
22807280
41.

Sleep spindles predict neural and behavioral changes in motor sequence consolidation.

Barakat M, Carrier J, Debas K, Lungu O, Fogel S, Vandewalle G, Hoge RD, Bellec P, Karni A, Ungerleider LG, Benali H, Doyon J.

Hum Brain Mapp. 2013 Nov;34(11):2918-28. doi: 10.1002/hbm.22116. Epub 2012 Jun 5.

42.

Resting state FDG-PET functional connectivity as an early biomarker of Alzheimer's disease using conjoint univariate and independent component analyses.

Toussaint PJ, Perlbarg V, Bellec P, Desarnaud S, Lacomblez L, Doyon J, Habert MO, Benali H; Benali, for the Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2012 Nov 1;63(2):936-46. doi: 10.1016/j.neuroimage.2012.03.091. Epub 2012 Apr 10.

PMID:
22510256
43.

The pipeline system for Octave and Matlab (PSOM): a lightweight scripting framework and execution engine for scientific workflows.

Bellec P, Lavoie-Courchesne S, Dickinson P, Lerch JP, Zijdenbos AP, Evans AC.

Front Neuroinform. 2012 Apr 3;6:7. doi: 10.3389/fninf.2012.00007. eCollection 2012.

44.

Global and system-specific resting-state fMRI fluctuations are uncorrelated: principal component analysis reveals anti-correlated networks.

Carbonell F, Bellec P, Shmuel A.

Brain Connect. 2011;1(6):496-510. doi: 10.1089/brain.2011.0065. Epub 2012 Mar 23.

45.

A convergent functional architecture of the insula emerges across imaging modalities.

Kelly C, Toro R, Di Martino A, Cox CL, Bellec P, Castellanos FX, Milham MP.

Neuroimage. 2012 Jul 16;61(4):1129-42. doi: 10.1016/j.neuroimage.2012.03.021. Epub 2012 Mar 13.

46.

Task-related BOLD responses and resting-state functional connectivity during physiological clamping of end-tidal CO(2).

Madjar C, Gauthier CJ, Bellec P, Birn RM, Brooks JC, Hoge RD.

Neuroimage. 2012 May 15;61(1):41-9. doi: 10.1016/j.neuroimage.2012.02.080. Epub 2012 Mar 6.

PMID:
22418394
47.

Callosal fiber length and interhemispheric connectivity in adults with autism: brain overgrowth and underconnectivity.

Lewis JD, Theilmann RJ, Fonov V, Bellec P, Lincoln A, Evans AC, Townsend J.

Hum Brain Mapp. 2013 Jul;34(7):1685-95. doi: 10.1002/hbm.22018. Epub 2012 Feb 22.

PMID:
22359385
48.

Negative associations between corpus callosum midsagittal area and IQ in a representative sample of healthy children and adolescents.

Ganjavi H, Lewis JD, Bellec P, MacDonald PA, Waber DP, Evans AC, Karama S; Brain Development Cooperative Group.

PLoS One. 2011;6(5):e19698. doi: 10.1371/journal.pone.0019698. Epub 2011 May 19.

49.

Functional neuroanatomy associated with the expression of distinct movement kinematics in motor sequence learning.

Orban P, Peigneux P, Lungu O, Debas K, Barakat M, Bellec P, Benali H, Maquet P, Doyon J.

Neuroscience. 2011 Apr 14;179:94-103. doi: 10.1016/j.neuroscience.2011.01.040. Epub 2011 Jan 26.

PMID:
21277942
50.

Functional connectivity in patients with idiopathic generalized epilepsy.

Moeller F, Maneshi M, Pittau F, Gholipour T, Bellec P, Dubeau F, Grova C, Gotman J.

Epilepsia. 2011 Mar;52(3):515-22. doi: 10.1111/j.1528-1167.2010.02938.x. Epub 2011 Jan 26.

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