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Items: 1 to 50 of 59

1.

Inhibition of p38 MAPK activity leads to cell type-specific effects on the molecular circadian clock and time-dependent reduction of glioma cell invasiveness.

Goldsmith CS, Kim SM, Karunarathna N, Neuendorff N, Gerard Toussaint L, Earnest DJ, Bell-Pedersen D.

BMC Cancer. 2018 Jan 10;18(1):43. doi: 10.1186/s12885-017-3896-y.

2.

The cell free protein synthesis system from the model filamentous fungus Neurospora crassa.

Wu C, Dasgupta A, Shen L, Bell-Pedersen D, Sachs MS.

Methods. 2018 Mar 15;137:11-19. doi: 10.1016/j.ymeth.2017.12.003. Epub 2017 Dec 30.

PMID:
29294368
3.

Guidelines for Genome-Scale Analysis of Biological Rhythms.

Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB.

J Biol Rhythms. 2017 Oct;32(5):380-393. doi: 10.1177/0748730417728663. Epub 2017 Nov 3.

4.

Translation Initiation from Conserved Non-AUG Codons Provides Additional Layers of Regulation and Coding Capacity.

Ivanov IP, Wei J, Caster SZ, Smith KM, Michel AM, Zhang Y, Firth AE, Freitag M, Dunlap JC, Bell-Pedersen D, Atkins JF, Sachs MS.

MBio. 2017 Jun 27;8(3). pii: e00844-17. doi: 10.1128/mBio.00844-17.

5.

The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion.

Dekhang R, Wu C, Smith KM, Lamb TM, Peterson M, Bredeweg EL, Ibarra O, Emerson JM, Karunarathna N, Lyubetskaya A, Azizi E, Hurley JM, Dunlap JC, Galagan JE, Freitag M, Sachs MS, Bell-Pedersen D.

G3 (Bethesda). 2017 Jan 5;7(1):129-142. doi: 10.1534/g3.116.034298.

6.

Circadian clock regulation of mRNA translation through eukaryotic elongation factor eEF-2.

Caster SZ, Castillo K, Sachs MS, Bell-Pedersen D.

Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):9605-10. doi: 10.1073/pnas.1525268113. Epub 2016 Aug 9.

7.

Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential.

Hurley JM, Dasgupta A, Emerson JM, Zhou X, Ringelberg CS, Knabe N, Lipzen AM, Lindquist EA, Daum CG, Barry KW, Grigoriev IV, Smith KM, Galagan JE, Bell-Pedersen D, Freitag M, Cheng C, Loros JJ, Dunlap JC.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):16995-7002. doi: 10.1073/pnas.1418963111. Epub 2014 Oct 31.

8.

A novel cryptochrome-dependent oscillator in Neurospora crassa.

Nsa IY, Karunarathna N, Liu X, Huang H, Boetteger B, Bell-Pedersen D.

Genetics. 2015 Jan;199(1):233-45. doi: 10.1534/genetics.114.169441. Epub 2014 Oct 30.

9.

Genome-wide characterization of light-regulated genes in Neurospora crassa.

Wu C, Yang F, Smith KM, Peterson M, Dekhang R, Zhang Y, Zucker J, Bredeweg EL, Mallappa C, Zhou X, Lyubetskaya A, Townsend JP, Galagan JE, Freitag M, Dunlap JC, Bell-Pedersen D, Sachs MS.

G3 (Bethesda). 2014 Jul 21;4(9):1731-45. doi: 10.1534/g3.114.012617.

10.

Diverse roles for MAPK signaling in circadian clocks.

Goldsmith CS, Bell-Pedersen D.

Adv Genet. 2013;84:1-39. doi: 10.1016/B978-0-12-407703-4.00001-3. Review.

11.

Regulation of gene expression in Neurospora crassa with a copper responsive promoter.

Lamb TM, Vickery J, Bell-Pedersen D.

G3 (Bethesda). 2013 Dec 9;3(12):2273-80. doi: 10.1534/g3.113.008821.

12.

Circadian activation of the mitogen-activated protein kinase MAK-1 facilitates rhythms in clock-controlled genes in Neurospora crassa.

Bennett LD, Beremand P, Thomas TL, Bell-Pedersen D.

Eukaryot Cell. 2013 Jan;12(1):59-69. doi: 10.1128/EC.00207-12. Epub 2012 Nov 2.

13.

The Neurospora crassa OS MAPK pathway-activated transcription factor ASL-1 contributes to circadian rhythms in pathway responsive clock-controlled genes.

Lamb TM, Finch KE, Bell-Pedersen D.

Fungal Genet Biol. 2012 Feb;49(2):180-8. doi: 10.1016/j.fgb.2011.12.006. Epub 2012 Jan 5.

14.

Direct transcriptional control of a p38 MAPK pathway by the circadian clock in Neurospora crassa.

Lamb TM, Goldsmith CS, Bennett L, Finch KE, Bell-Pedersen D.

PLoS One. 2011;6(11):e27149. doi: 10.1371/journal.pone.0027149. Epub 2011 Nov 7.

15.

The genetics of circadian rhythms in Neurospora.

Lakin-Thomas PL, Bell-Pedersen D, Brody S.

Adv Genet. 2011;74:55-103. doi: 10.1016/B978-0-12-387690-4.00003-9. Review.

16.

Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex.

Smith KM, Sancar G, Dekhang R, Sullivan CM, Li S, Tag AG, Sancar C, Bredeweg EL, Priest HD, McCormick RF, Thomas TL, Carrington JC, Stajich JE, Bell-Pedersen D, Brunner M, Freitag M.

Eukaryot Cell. 2010 Oct;9(10):1549-56. doi: 10.1128/EC.00154-10. Epub 2010 Jul 30.

17.

Fungal photobiology. Introduction.

Bell-Pedersen D.

Fungal Genet Biol. 2010 Nov;47(11):879-80. doi: 10.1016/j.fgb.2010.07.001. Epub 2010 Jul 7. No abstract available.

PMID:
20619349
18.

A connection between MAPK pathways and circadian clocks.

de Paula RM, Lamb TM, Bennett L, Bell-Pedersen D.

Cell Cycle. 2008 Sep 1;7(17):2630-4. Epub 2008 Sep 26. Review.

19.

Complexity of the Neurospora crassa circadian clock system: multiple loops and oscillators.

de Paula RM, Vitalini MW, Gomer RH, Bell-Pedersen D.

Cold Spring Harb Symp Quant Biol. 2007;72:345-51. doi: 10.1101/sqb.2007.72.002. Review.

PMID:
18419292
20.

Circadian rhythmicity mediated by temporal regulation of the activity of p38 MAPK.

Vitalini MW, de Paula RM, Goldsmith CS, Jones CA, Borkovich KA, Bell-Pedersen D.

Proc Natl Acad Sci U S A. 2007 Nov 13;104(46):18223-8. Epub 2007 Nov 5.

21.

The rhythms of life: circadian output pathways in Neurospora.

Vitalini MW, de Paula RM, Park WD, Bell-Pedersen D.

J Biol Rhythms. 2006 Dec;21(6):432-44. Review.

PMID:
17107934
22.

Circadian rhythms in Neurospora crassa and other filamentous fungi.

Liu Y, Bell-Pedersen D.

Eukaryot Cell. 2006 Aug;5(8):1184-93. Review. No abstract available.

23.

Two circadian timing circuits in Neurospora crassa cells share components and regulate distinct rhythmic processes.

de Paula RM, Lewis ZA, Greene AV, Seo KS, Morgan LW, Vitalini MW, Bennett L, Gomer RH, Bell-Pedersen D.

J Biol Rhythms. 2006 Jun;21(3):159-68.

PMID:
16731655
24.

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Peñalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW.

Nature. 2005 Dec 22;438(7071):1105-15.

PMID:
16372000
25.

Circadian rhythms from multiple oscillators: lessons from diverse organisms.

Bell-Pedersen D, Cassone VM, Earnest DJ, Golden SS, Hardin PE, Thomas TL, Zoran MJ.

Nat Rev Genet. 2005 Jul;6(7):544-56. Review.

26.

Assignment of an essential role for the Neurospora frequency gene in circadian entrainment to temperature cycles.

Pregueiro AM, Price-Lloyd N, Bell-Pedersen D, Heintzen C, Loros JJ, Dunlap JC.

Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):2210-5. Epub 2005 Jan 26.

27.

Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa.

Xie X, Wilkinson HH, Correa A, Lewis ZA, Bell-Pedersen D, Ebbole DJ.

Fungal Genet Biol. 2004 Dec;41(12):1104-19.

PMID:
15531214
28.

Effects of altered Clock gene expression on the pacemaker properties of SCN2.2 cells and oscillatory properties of NIH/3T3 cells.

Allen GC, Farnell Y, Bell-Pedersen D, Cassone VM, Earnest DJ.

Neuroscience. 2004;127(4):989-99.

PMID:
15312911
29.

A genetic selection for circadian output pathway mutations in Neurospora crassa.

Vitalini MW, Morgan LW, March IJ, Bell-Pedersen D.

Genetics. 2004 May;167(1):119-29.

30.

Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism.

Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, Read ND, Seiler S, Bell-Pedersen D, Paietta J, Plesofsky N, Plamann M, Goodrich-Tanrikulu M, Schulte U, Mannhaupt G, Nargang FE, Radford A, Selitrennikoff C, Galagan JE, Dunlap JC, Loros JJ, Catcheside D, Inoue H, Aramayo R, Polymenis M, Selker EU, Sachs MS, Marzluf GA, Paulsen I, Davis R, Ebbole DJ, Zelter A, Kalkman ER, O'Rourke R, Bowring F, Yeadon J, Ishii C, Suzuki K, Sakai W, Pratt R.

Microbiol Mol Biol Rev. 2004 Mar;68(1):1-108. Review.

31.

Multiple oscillators regulate circadian gene expression in Neurospora.

Correa A, Lewis ZA, Greene AV, March IJ, Gomer RH, Bell-Pedersen D.

Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13597-602. Epub 2003 Nov 3.

32.

Transcriptional profiling of the chick pineal gland, a photoreceptive circadian oscillator and pacemaker.

Bailey MJ, Beremand PD, Hammer R, Bell-Pedersen D, Thomas TL, Cassone VM.

Mol Endocrinol. 2003 Oct;17(10):2084-95. Epub 2003 Jul 24.

PMID:
12881511
33.

The genome sequence of the filamentous fungus Neurospora crassa.

Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B.

Nature. 2003 Apr 24;422(6934):859-68.

PMID:
12712197
34.

A circadian oscillator in Aspergillus spp. regulates daily development and gene expression.

Greene AV, Keller N, Haas H, Bell-Pedersen D.

Eukaryot Cell. 2003 Apr;2(2):231-7.

35.

Circadian and light-induced expression of luciferase in Neurospora crassa.

Morgan LW, Greene AV, Bell-Pedersen D.

Fungal Genet Biol. 2003 Apr;38(3):327-32.

PMID:
12684022
36.

Neurospora clock-controlled gene 9 (ccg-9) encodes trehalose synthase: circadian regulation of stress responses and development.

Shinohara ML, Correa A, Bell-Pedersen D, Dunlap JC, Loros JJ.

Eukaryot Cell. 2002 Feb;1(1):33-43.

38.

Overexpression of White Collar-1 (WC-1) activates circadian clock-associated genes, but is not sufficient to induce most light-regulated gene expression in Neurospora crassa.

Lewis ZA, Correa A, Schwerdtfeger C, Link KL, Xie X, Gomer RH, Thomas T, Ebbole DJ, Bell-Pedersen D.

Mol Microbiol. 2002 Aug;45(4):917-31.

39.

The Neurospora crassa pheromone precursor genes are regulated by the mating type locus and the circadian clock.

Bobrowicz P, Pawlak R, Correa A, Bell-Pedersen D, Ebbole DJ.

Mol Microbiol. 2002 Aug;45(3):795-804.

40.

Genetic interactions between clock mutations in Neurospora crassa: can they help us to understand complexity?

Morgan LW, Feldman JF, Bell-Pedersen D.

Philos Trans R Soc Lond B Biol Sci. 2001 Nov 29;356(1415):1717-24. Review.

41.

The Neurospora circadian clock: simple or complex?

Bell-Pedersen D, Crosthwaite SK, Lakin-Thomas PL, Merrow M, Økland M.

Philos Trans R Soc Lond B Biol Sci. 2001 Nov 29;356(1415):1697-709. Review.

42.
43.

vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation.

Shrode LB, Lewis ZA, White LD, Bell-Pedersen D, Ebbole DJ.

Fungal Genet Biol. 2001 Apr;32(3):169-81.

PMID:
11343403
44.

Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes.

Zhu H, Nowrousian M, Kupfer D, Colot HV, Berrocal-Tito G, Lai H, Bell-Pedersen D, Roe BA, Loros JJ, Dunlap JC.

Genetics. 2001 Mar;157(3):1057-65.

45.

Understanding circadian rhythmicity in Neurospora crassa: from behavior to genes and back again.

Bell-Pedersen D.

Fungal Genet Biol. 2000 Feb;29(1):1-18. Review.

PMID:
10779395
46.

Keeping pace with Neurospora circadian rhythms.

Bell-Pedersen D.

Microbiology. 1998 Jul;144 ( Pt 7):1699-711. Review. No abstract available.

PMID:
9695904
47.

Circadian clock-controlled genes isolated from Neurospora crassa are late night- to early morning-specific.

Bell-Pedersen D, Shinohara ML, Loros JJ, Dunlap JC.

Proc Natl Acad Sci U S A. 1996 Nov 12;93(23):13096-101.

48.
49.

The genetic and molecular dissection of a prototypic circadian system.

Dunlap JC, Loros JJ, Merrow M, Crosthwaite S, Bell-Pedersen D, Garceau N, Shinohara M, Cho H, Luo C.

Prog Brain Res. 1996;111:11-27. Review.

PMID:
8990904
50.

The genetic basis of the circadian clock: identification of frq and FRQ as clock components in Neurospora.

Dunlap JC, Loros JJ, Aronson BD, Merrow M, Crosthwaite S, Bell-Pedersen D, Johnson K, Lindgren K, Garceau NY.

Ciba Found Symp. 1995;183:3-17; discussion 17-25. Review.

PMID:
7656691

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