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Items: 1 to 50 of 118

1.

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.

Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon Ł, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang SY, Rosell M, Rodríguez-Lumbreras LA, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin WH, Aderinwale T, Maddhuri Venkata Subraman SR, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, Chauvot de Beauchêne I, Maigret B, Devignes MD, Ruiz Echartea ME, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, Dapkūnas J, Olechnovič K, Venclovas Č, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, Weng Z, Guest JD, Gowthaman R, Pierce BG, Xu X, Duan R, Qiu L, Hou J, Ryan Merideth B, Ma Z, Cheng J, Zou X, Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue L, Jiménez-García B, van Noort CW, Honorato RV, Bonvin AMJJ, Wodak SJ.

Proteins. 2019 Dec;87(12):1200-1221. doi: 10.1002/prot.25838. Epub 2019 Oct 25.

PMID:
31612567
2.

Detection and Quantification of Photosystem II Inhibitors Using the Freshwater Alga Desmodesmus subspicatus in Combination with High-Performance Thin-Layer Chromatography.

Riegraf C, Reifferscheid G, Becker B, Belkin S, Hollert H, Feiler U, Buchinger S.

Environ Sci Technol. 2019 Oct 28. doi: 10.1021/acs.est.9b04634. [Epub ahead of print]

PMID:
31609591
3.

A Smartphone-Based Whole-Cell Array Sensor for Detection of Antibiotics in Milk.

Lu MY, Kao WC, Belkin S, Cheng JY.

Sensors (Basel). 2019 Sep 9;19(18). pii: E3882. doi: 10.3390/s19183882.

4.

Combination of yeast-based in vitro screens with high-performance thin-layer chromatography as a novel tool for the detection of hormonal and dioxin-like compounds.

Riegraf C, Reifferscheid G, Belkin S, Moscovici L, Shakibai D, Hollert H, Buchinger S.

Anal Chim Acta. 2019 Nov 12;1081:218-230. doi: 10.1016/j.aca.2019.07.018. Epub 2019 Jul 9.

PMID:
31446961
5.

The involvement of superoxide radicals in medium pressure UV derived inactivation.

Gerchman Y, Cohen-Yaniv V, Betzalel Y, Yagur-Kroll S, Belkin S, Mamane H.

Water Res. 2019 Sep 15;161:119-125. doi: 10.1016/j.watres.2019.05.084. Epub 2019 May 27.

PMID:
31181447
6.

Coupling High-Performance Thin-Layer Chromatography with Bacterial Genotoxicity Bioreporters.

Shakibai D, Riegraf C, Moscovici L, Reifferscheid G, Buchinger S, Belkin S.

Environ Sci Technol. 2019 Jun 4;53(11):6410-6419. doi: 10.1021/acs.est.9b00921. Epub 2019 May 22.

PMID:
31074978
7.

Editorial 2019.

Rieseberg L, Geraldes A, Belkin SE, Chambers KE, Kane N.

Mol Ecol. 2019 Jan;28(1):1-28. doi: 10.1111/mec.14976. No abstract available.

PMID:
30672644
8.

A Portable Biosensor for 2,4-Dinitrotoluene Vapors.

Prante M, Ude C, Große M, Raddatz L, Krings U, John G, Belkin S, Scheper T.

Sensors (Basel). 2018 Dec 3;18(12). pii: E4247. doi: 10.3390/s18124247.

9.

Inhibition of protein interactions: co-crystalized protein-protein interfaces are nearly as good as holo proteins in rigid-body ligand docking.

Belkin S, Kundrotas PJ, Vakser IA.

J Comput Aided Mol Des. 2018 Jul;32(7):769-779. doi: 10.1007/s10822-018-0124-z. Epub 2018 Jul 12.

10.

Microbial biosensing of ciprofloxacin residues in food by a portable lens-free CCD-based analyzer.

Kao WC, Belkin S, Cheng JY.

Anal Bioanal Chem. 2018 Feb;410(4):1257-1263. doi: 10.1007/s00216-017-0792-x. Epub 2017 Dec 18.

PMID:
29256081
11.

Aptamer-Targeted Plasmonic Photothermal Therapy of Cancer.

Kolovskaya OS, Zamay TN, Belyanina IV, Karlova E, Garanzha I, Aleksandrovsky AS, Kirichenko A, Dubynina AV, Sokolov AE, Zamay GS, Glazyrin YE, Zamay S, Ivanchenko T, Chanchikova N, Tokarev N, Shepelevich N, Ozerskaya A, Badrin E, Belugin K, Belkin S, Zabluda V, Gargaun A, Berezovski MV, Kichkailo AS.

Mol Ther Nucleic Acids. 2017 Dec 15;9:12-21. doi: 10.1016/j.omtn.2017.08.007. Epub 2017 Aug 16.

12.

Aerobic Transformation of 2,4-Dinitrotoluene by Escherichia coli and Its Implications for the Detection of Trace Explosives.

Shemer B, Yagur-Kroll S, Hazan C, Belkin S.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e01729-17. doi: 10.1128/AEM.01729-17. Print 2018 Feb 15.

13.

Nanoscale Plasmonic V-Groove Waveguides for the Interrogation of Single Fluorescent Bacterial Cells.

Lotan O, Bar-David J, Smith CLC, Yagur-Kroll S, Belkin S, Kristensen A, Levy U.

Nano Lett. 2017 Sep 13;17(9):5481-5488. doi: 10.1021/acs.nanolett.7b02132. Epub 2017 Aug 8.

PMID:
28771367
14.

Remote detection of buried landmines using a bacterial sensor.

Belkin S, Yagur-Kroll S, Kabessa Y, Korouma V, Septon T, Anati Y, Zohar-Perez C, Rabinovitz Z, Nussinovitch A, Agranat AJ.

Nat Biotechnol. 2017 Apr 11;35(4):308-310. doi: 10.1038/nbt.3791. No abstract available.

PMID:
28398330
15.

Microbial bioreporters of trace explosives.

Shemer B, Koshet O, Yagur-Kroll S, Belkin S.

Curr Opin Biotechnol. 2017 Jun;45:113-119. doi: 10.1016/j.copbio.2017.03.003. Epub 2017 Mar 17. Review.

PMID:
28319855
16.

Convergent patterns in the evolution of mealybug symbioses involving different intrabacterial symbionts.

Szabó G, Schulz F, Toenshoff ER, Volland JM, Finkel OM, Belkin S, Horn M.

ISME J. 2017 Mar;11(3):715-726. doi: 10.1038/ismej.2016.148. Epub 2016 Dec 16.

17.

Reporter Gene Assays in Ecotoxicology.

Elad T, Belkin S.

Adv Biochem Eng Biotechnol. 2017;157:135-157. doi: 10.1007/10_2016_47. Review.

PMID:
27928578
18.

The Highly Conserved Escherichia coli Transcription Factor YhaJ Regulates Aromatic Compound Degradation.

Palevsky N, Shemer B, Connolly JP, Belkin S.

Front Microbiol. 2016 Sep 22;7:1490. eCollection 2016.

19.

SOS gene induction and possible mutagenic effects of freeze-drying in Escherichia coli and Salmonella typhimurium.

Rosen R, Buchinger S, Pfänder R, Pedhazur R, Reifferscheid G, Belkin S.

Appl Microbiol Biotechnol. 2016 Nov;100(21):9255-9264. Epub 2016 Aug 10.

PMID:
27510981
20.

Metagenomic Signatures of Bacterial Adaptation to Life in the Phyllosphere of a Salt-Secreting Desert Tree.

Finkel OM, Delmont TO, Post AF, Belkin S.

Appl Environ Microbiol. 2016 Apr 18;82(9):2854-2861. doi: 10.1128/AEM.00483-16. Print 2016 May.

21.

Standoff detection of explosives and buried landmines using fluorescent bacterial sensor cells.

Kabessa Y, Eyal O, Bar-On O, Korouma V, Yagur-Kroll S, Belkin S, Agranat AJ.

Biosens Bioelectron. 2016 May 15;79:784-8. doi: 10.1016/j.bios.2016.01.011. Epub 2016 Jan 6.

PMID:
26774094
22.

Genetically engineered microorganisms for the detection of explosives' residues.

Shemer B, Palevsky N, Yagur-Kroll S, Belkin S.

Front Microbiol. 2015 Oct 29;6:1175. doi: 10.3389/fmicb.2015.01175. eCollection 2015. Review.

23.

Advanced Environmental Monitoring and Modeling (AEMM) 2014.

Song CH, Gu MB, Platt U, Belkin S.

Chemosphere. 2016 Jan;143:1-2. doi: 10.1016/j.chemosphere.2015.08.041. Epub 2015 Sep 4. No abstract available.

PMID:
26347465
24.

Detection of 2,4-dinitrotoluene and 2,4,6-trinitrotoluene by an Escherichia coli bioreporter: performance enhancement by directed evolution.

Yagur-Kroll S, Amiel E, Rosen R, Belkin S.

Appl Microbiol Biotechnol. 2015 Sep;99(17):7177-88. doi: 10.1007/s00253-015-6607-0. Epub 2015 May 17.

PMID:
25981994
25.

High-throughput prescreening of pharmaceuticals using a genome-wide bacterial bioreporter array.

Elad T, Seo HB, Belkin S, Gu MB.

Biosens Bioelectron. 2015 Jun 15;68:699-704. doi: 10.1016/j.bios.2015.01.067. Epub 2015 Jan 30.

26.

Water pollutant monitoring by a whole cell array through lens-free detection on CCD.

Tsai HF, Tsai YC, Yagur-Kroll S, Palevsky N, Belkin S, Cheng JY.

Lab Chip. 2015 Mar 21;15(6):1472-80. doi: 10.1039/c4lc01189a.

PMID:
25608666
27.

A miniature porous aluminum oxide-based flow-cell for online water quality monitoring using bacterial sensor cells.

Yagur-Kroll S, Schreuder E, Ingham CJ, Heideman R, Rosen R, Belkin S.

Biosens Bioelectron. 2015 Feb 15;64:625-32. doi: 10.1016/j.bios.2014.09.076. Epub 2014 Oct 2.

PMID:
25441411
28.

Molecular manipulations for enhancing luminescent bioreporters performance in the detection of toxic chemicals.

Yagur-Kroll S, Belkin S.

Adv Biochem Eng Biotechnol. 2014;145:137-49. doi: 10.1007/978-3-662-43619-6_4. Review.

PMID:
25216954
29.

Escherichia [corrected] coli ribose binding protein based bioreporters revisited.

Reimer A, Yagur-Kroll S, Belkin S, Roy S, van der Meer JR.

Sci Rep. 2014 Jul 9;4:5626. doi: 10.1038/srep05626. Erratum in: Sci Rep. 2014;4:7445.

30.

Mixtures of chemical pollutants at European legislation safety concentrations: how safe are they?

Carvalho RN, Arukwe A, Ait-Aissa S, Bado-Nilles A, Balzamo S, Baun A, Belkin S, Blaha L, Brion F, Conti D, Creusot N, Essig Y, Ferrero VE, Flander-Putrle V, Fürhacker M, Grillari-Voglauer R, Hogstrand C, Jonáš A, Kharlyngdoh JB, Loos R, Lundebye AK, Modig C, Olsson PE, Pillai S, Polak N, Potalivo M, Sanchez W, Schifferli A, Schirmer K, Sforzini S, Stürzenbaum SR, Søfteland L, Turk V, Viarengo A, Werner I, Yagur-Kroll S, Zounková R, Lettieri T.

Toxicol Sci. 2014 Sep;141(1):218-33. doi: 10.1093/toxsci/kfu118. Epub 2014 Jun 23.

31.

Improved detection of antibiotic compounds by bacterial reporter strains achieved by manipulations of membrane permeability and efflux capacity.

Melamed S, Naftaly S, Belkin S.

Appl Microbiol Biotechnol. 2014 Mar;98(5):2267-77. doi: 10.1007/s00253-013-5176-3. Epub 2013 Aug 21.

PMID:
23963273
32.

Simultaneous quantification of the fluorescent responses of an ensemble of bacterial sensors.

Kabessa Y, Korouma V, Ilan H, Yagur-Kroll S, Belkin S, Agranat AJ.

Biosens Bioelectron. 2013 Nov 15;49:394-8. doi: 10.1016/j.bios.2013.05.050. Epub 2013 Jun 5.

PMID:
23800611
33.

Broad spectrum detection and "barcoding" of water pollutants by a genome-wide bacterial sensor array.

Elad T, Belkin S.

Water Res. 2013 Jul 1;47(11):3782-90. doi: 10.1016/j.watres.2013.04.011. Epub 2013 Apr 19.

PMID:
23726715
34.

Escherichia coli bioreporters for the detection of 2,4-dinitrotoluene and 2,4,6-trinitrotoluene.

Yagur-Kroll S, Lalush C, Rosen R, Bachar N, Moskovitz Y, Belkin S.

Appl Microbiol Biotechnol. 2014 Jan;98(2):885-95. doi: 10.1007/s00253-013-4888-8. Epub 2013 Apr 25.

PMID:
23615740
35.

Diverse microhabitats experienced by Halomonas variabilis on salt-secreting leaves.

Burch AY, Finkel OM, Cho JK, Belkin S, Lindow SE.

Appl Environ Microbiol. 2013 Feb;79(3):845-52. doi: 10.1128/AEM.02791-12. Epub 2012 Nov 16.

36.

Global abundance of microbial rhodopsins.

Finkel OM, Béjà O, Belkin S.

ISME J. 2013 Feb;7(2):448-51. doi: 10.1038/ismej.2012.112. Epub 2012 Oct 11.

37.

Distance-decay relationships partially determine diversity patterns of phyllosphere bacteria on Tamarix trees across the Sonoran Desert [corrected].

Finkel OM, Burch AY, Elad T, Huse SM, Lindow SE, Post AF, Belkin S.

Appl Environ Microbiol. 2012 Sep;78(17):6187-93. doi: 10.1128/AEM.00888-12. Epub 2012 Jun 29. Erratum in: Appl Environ Microbiol. 2012 Nov;78(21):7818.

38.

Bacterial anoxygenic photosynthesis on plant leaf surfaces.

Atamna-Ismaeel N, Finkel O, Glaser F, von Mering C, Vorholt JA, Koblížek M, Belkin S, Béjà O.

Environ Microbiol Rep. 2012 Apr;4(2):209-16. doi: 10.1111/j.1758-2229.2011.00323.x. Epub 2012 Jan 16.

PMID:
23757275
39.

A bacterial reporter panel for the detection and classification of antibiotic substances.

Melamed S, Lalush C, Elad T, Yagur-Kroll S, Belkin S, Pedahzur R.

Microb Biotechnol. 2012 Jul;5(4):536-48. doi: 10.1111/j.1751-7915.2012.00333.x. Epub 2012 Mar 2.

40.

International round-robin study on the Ames fluctuation test.

Reifferscheid G, Maes HM, Allner B, Badurova J, Belkin S, Bluhm K, Brauer F, Bressling J, Domeneghetti S, Elad T, Flückiger-Isler S, Grummt HJ, Gürtler R, Hecht A, Heringa MB, Hollert H, Huber S, Kramer M, Magdeburg A, Ratte HT, Sauerborn-Klobucar R, Sokolowski A, Soldan P, Smital T, Stalter D, Venier P, Ziemann C, Zipperle J, Buchinger S.

Environ Mol Mutagen. 2012 Apr;53(3):185-97. doi: 10.1002/em.21677. Epub 2012 Jan 4.

PMID:
22246666
41.

Bacterial bioluminescence as a lure for marine zooplankton and fish.

Zarubin M, Belkin S, Ionescu M, Genin A.

Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):853-7. doi: 10.1073/pnas.1116683109. Epub 2011 Dec 27.

42.

Whole-cell biochips for online water monitoring.

Elad T, Belkin S.

Bioeng Bugs. 2012 Mar-Apr;3(2):124-8. doi: 10.4161/bbug.18879. Epub 2012 Mar 1.

43.

Biogeographical diversity of leaf-associated microbial communities from salt-secreting Tamarix trees of the Dead Sea region.

Qvit-Raz N, Finkel OM, Al-Deeb TM, Malkawi HI, Hindiyeh MY, Jurkevitch E, Belkin S.

Res Microbiol. 2012 Feb;163(2):142-50. doi: 10.1016/j.resmic.2011.11.006. Epub 2011 Dec 3.

PMID:
22178498
44.

Microbial sensor cell arrays.

Melamed S, Elad T, Belkin S.

Curr Opin Biotechnol. 2012 Feb;23(1):2-8. doi: 10.1016/j.copbio.2011.11.024. Epub 2011 Dec 14. Review.

PMID:
22176747
45.

Functional implications of structural predictions for alternative splice proteins expressed in Her2/neu-induced breast cancers.

Menon R, Roy A, Mukherjee S, Belkin S, Zhang Y, Omenn GS.

J Proteome Res. 2011 Dec 2;10(12):5503-11. doi: 10.1021/pr200772w. Epub 2011 Oct 28.

46.

Geographical location determines the population structure in phyllosphere microbial communities of a salt-excreting desert tree.

Finkel OM, Burch AY, Lindow SE, Post AF, Belkin S.

Appl Environ Microbiol. 2011 Nov;77(21):7647-55. doi: 10.1128/AEM.05565-11. Epub 2011 Sep 16.

47.

Microbial rhodopsins on leaf surfaces of terrestrial plants.

Atamna-Ismaeel N, Finkel OM, Glaser F, Sharon I, Schneider R, Post AF, Spudich JL, von Mering C, Vorholt JA, Iluz D, Béjà O, Belkin S.

Environ Microbiol. 2012 Jan;14(1):140-6. doi: 10.1111/j.1462-2920.2011.02554.x. Epub 2011 Sep 1.

48.

Online monitoring of water toxicity by use of bioluminescent reporter bacterial biochips.

Elad T, Almog R, Yagur-Kroll S, Levkov K, Melamed S, Shacham-Diamand Y, Belkin S.

Environ Sci Technol. 2011 Oct 1;45(19):8536-44. doi: 10.1021/es202465c. Epub 2011 Sep 9.

PMID:
21875062
49.

Microbial genotoxicity bioreporters based on sulA activation.

Biran A, Ben Yoav H, Yagur-Kroll S, Pedahzur R, Buchinger S, Shacham-Diamand Y, Reifferscheid G, Belkin S.

Anal Bioanal Chem. 2011 Jul;400(9):3013-24. doi: 10.1007/s00216-011-5007-2. Epub 2011 Apr 30.

PMID:
21533638
50.

Negative regulation of σ(70)-driven promoters by σ(70).

Ionescu M, Elgrably-Weiss M, Elad T, Rasouly A, Yagur-Kroll S, Belkin S.

Res Microbiol. 2011 Jun;162(5):461-9. doi: 10.1016/j.resmic.2011.03.005. Epub 2011 Mar 21.

PMID:
21396442

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