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Items: 36

1.

The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation.

Hildebrandt A, Brüggemann M, Rücklé C, Boerner S, Heidelberger JB, Busch A, Hänel H, Voigt A, Möckel MM, Ebersberger S, Scholz A, Dold A, Schmid T, Ebersberger I, Roignant JY, Zarnack K, König J, Beli P.

Genome Biol. 2019 Oct 22;20(1):216. doi: 10.1186/s13059-019-1814-0.

2.

NCAM1 (CD56) promotes leukemogenesis and confers drug resistance in AML.

Sasca D, Szybinski J, Schüler A, Shah V, Heidelberger J, Haehnel PS, Dolnik A, Kriege O, Fehr EM, Gebhardt WH, Reid G, Scholl C, Theobald M, Bullinger L, Beli P, Kindler T.

Blood. 2019 May 23;133(21):2305-2319. doi: 10.1182/blood-2018-12-889725. Epub 2019 Feb 27.

PMID:
30814062
3.

ATM orchestrates the DNA-damage response to counter toxic non-homologous end-joining at broken replication forks.

Balmus G, Pilger D, Coates J, Demir M, Sczaniecka-Clift M, Barros AC, Woods M, Fu B, Yang F, Chen E, Ostermaier M, Stankovic T, Ponstingl H, Herzog M, Yusa K, Martinez FM, Durant ST, Galanty Y, Beli P, Adams DJ, Bradley A, Metzakopian E, Forment JV, Jackson SP.

Nat Commun. 2019 Jan 8;10(1):87. doi: 10.1038/s41467-018-07729-2.

4.

Quantitative Phosphoproteomics of Selective Autophagy Receptors.

Juretschke T, Beli P, Dikic I.

Methods Mol Biol. 2019;1880:691-701. doi: 10.1007/978-1-4939-8873-0_46.

PMID:
30610732
5.

Shieldin complex promotes DNA end-joining and counters homologous recombination in BRCA1-null cells.

Dev H, Chiang TW, Lescale C, de Krijger I, Martin AG, Pilger D, Coates J, Sczaniecka-Clift M, Wei W, Ostermaier M, Herzog M, Lam J, Shea A, Demir M, Wu Q, Yang F, Fu B, Lai Z, Balmus G, Belotserkovskaya R, Serra V, O'Connor MJ, Bruna A, Beli P, Pellegrini L, Caldas C, Deriano L, Jacobs JJL, Galanty Y, Jackson SP.

Nat Cell Biol. 2018 Aug;20(8):954-965. doi: 10.1038/s41556-018-0140-1. Epub 2018 Jul 18.

6.

p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage.

Borisova ME, Voigt A, Tollenaere MAX, Sahu SK, Juretschke T, Kreim N, Mailand N, Choudhary C, Bekker-Jensen S, Akutsu M, Wagner SA, Beli P.

Nat Commun. 2018 Mar 9;9(1):1017. doi: 10.1038/s41467-018-03417-3.

7.

Proteomic profiling of VCP substrates links VCP to K6-linked ubiquitylation and c-Myc function.

Heidelberger JB, Voigt A, Borisova ME, Petrosino G, Ruf S, Wagner SA, Beli P.

EMBO Rep. 2018 Apr;19(4). pii: e44754. doi: 10.15252/embr.201744754. Epub 2018 Feb 21.

8.

Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system.

Hildebrandt A, Alanis-Lobato G, Voigt A, Zarnack K, Andrade-Navarro MA, Beli P, König J.

Sci Rep. 2017 Nov 29;7(1):16582. doi: 10.1038/s41598-017-16695-6.

9.

FBXO32 promotes microenvironment underlying epithelial-mesenchymal transition via CtBP1 during tumour metastasis and brain development.

Sahu SK, Tiwari N, Pataskar A, Zhuang Y, Borisova M, Diken M, Strand S, Beli P, Tiwari VK.

Nat Commun. 2017 Nov 15;8(1):1523. doi: 10.1038/s41467-017-01366-x.

10.

HSP90 is necessary for the ACK1-dependent phosphorylation of STAT1 and STAT3.

Mahendrarajah N, Borisova ME, Reichardt S, Godmann M, Sellmer A, Mahboobi S, Haitel A, Schmid K, Kenner L, Heinzel T, Beli P, Krämer OH.

Cell Signal. 2017 Nov;39:9-17. doi: 10.1016/j.cellsig.2017.07.014. Epub 2017 Jul 21.

PMID:
28739485
11.

Ubiquitylation of the acetyltransferase MOF in Drosophila melanogaster.

Schunter S, Villa R, Flynn V, Heidelberger JB, Classen AK, Beli P, Becker PB.

PLoS One. 2017 May 16;12(5):e0177408. doi: 10.1371/journal.pone.0177408. eCollection 2017.

12.

Mass Spectrometry-Based Proteomics for Quantifying DNA Damage-Induced Phosphorylation.

Borisova ME, Wagner SA, Beli P.

Methods Mol Biol. 2017;1599:215-227. doi: 10.1007/978-1-4939-6955-5_16.

PMID:
28477122
13.

IKKα controls ATG16L1 degradation to prevent ER stress during inflammation.

Diamanti MA, Gupta J, Bennecke M, De Oliveira T, Ramakrishnan M, Braczynski AK, Richter B, Beli P, Hu Y, Saleh M, Mittelbronn M, Dikic I, Greten FR.

J Exp Med. 2017 Feb;214(2):423-437. doi: 10.1084/jem.20161867. Epub 2017 Jan 12.

14.

Mass Spectrometry-Based Proteomics for Investigating DNA Damage-Associated Protein Ubiquitylation.

Heidelberger JB, Wagner SA, Beli P.

Front Genet. 2016 Jun 14;7:109. doi: 10.3389/fgene.2016.00109. eCollection 2016. Review.

15.

SPATA2 links CYLD to the TNF-α receptor signaling complex and modulates the receptor signaling outcomes.

Wagner SA, Satpathy S, Beli P, Choudhary C.

EMBO J. 2016 Sep 1;35(17):1868-84. doi: 10.15252/embj.201694300. Epub 2016 Jun 15.

16.

Phosphorylation of OPTN by TBK1 enhances its binding to Ub chains and promotes selective autophagy of damaged mitochondria.

Richter B, Sliter DA, Herhaus L, Stolz A, Wang C, Beli P, Zaffagnini G, Wild P, Martens S, Wagner SA, Youle RJ, Dikic I.

Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):4039-44. doi: 10.1073/pnas.1523926113. Epub 2016 Mar 30.

17.

Illuminating Spatial and Temporal Organization of Protein Interaction Networks by Mass Spectrometry-Based Proteomics.

Yang J, Wagner SA, Beli P.

Front Genet. 2015 Dec 1;6:344. doi: 10.3389/fgene.2015.00344. eCollection 2015. Review.

18.

p38- and MK2-dependent signalling promotes stress-induced centriolar satellite remodelling via 14-3-3-dependent sequestration of CEP131/AZI1.

Tollenaere MAX, Villumsen BH, Blasius M, Nielsen JC, Wagner SA, Bartek J, Beli P, Mailand N, Bekker-Jensen S.

Nat Commun. 2015 Nov 30;6:10075. doi: 10.1038/ncomms10075.

19.

ATR inhibition rewires cellular signaling networks induced by replication stress.

Wagner SA, Oehler H, Voigt A, Dalic D, Freiwald A, Serve H, Beli P.

Proteomics. 2016 Feb;16(3):402-16. doi: 10.1002/pmic.201500172.

PMID:
26572502
20.

Systematic E2 screening reveals a UBE2D-RNF138-CtIP axis promoting DNA repair.

Schmidt CK, Galanty Y, Sczaniecka-Clift M, Coates J, Jhujh S, Demir M, Cornwell M, Beli P, Jackson SP.

Nat Cell Biol. 2015 Nov;17(11):1458-1470. doi: 10.1038/ncb3260. Epub 2015 Oct 26.

21.

Ubiquitin regulates dissociation of DNA repair factors from chromatin.

Beli P, Jackson SP.

Oncotarget. 2015 Jun 20;6(17):14727-8. No abstract available.

22.

Systems-wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation.

Satpathy S, Wagner SA, Beli P, Gupta R, Kristiansen TA, Malinova D, Francavilla C, Tolar P, Bishop GA, Hostager BS, Choudhary C.

Mol Syst Biol. 2015 Jun 2;11(6):810. doi: 10.15252/msb.20145880.

23.

Neddylation promotes ubiquitylation and release of Ku from DNA-damage sites.

Brown JS, Lukashchuk N, Sczaniecka-Clift M, Britton S, le Sage C, Calsou P, Beli P, Galanty Y, Jackson SP.

Cell Rep. 2015 May 5;11(5):704-14. doi: 10.1016/j.celrep.2015.03.058. Epub 2015 Apr 23.

24.

Cmr1/WDR76 defines a nuclear genotoxic stress body linking genome integrity and protein quality control.

Gallina I, Colding C, Henriksen P, Beli P, Nakamura K, Offman J, Mathiasen DP, Silva S, Hoffmann E, Groth A, Choudhary C, Lisby M.

Nat Commun. 2015 Mar 30;6:6533. doi: 10.1038/ncomms7533.

25.

Acetylation site specificities of lysine deacetylase inhibitors in human cells.

Schölz C, Weinert BT, Wagner SA, Beli P, Miyake Y, Qi J, Jensen LJ, Streicher W, McCarthy AR, Westwood NJ, Lain S, Cox J, Matthias P, Mann M, Bradner JE, Choudhary C.

Nat Biotechnol. 2015 Apr;33(4):415-23. doi: 10.1038/nbt.3130. Epub 2015 Mar 9.

PMID:
25751058
26.

FBH1 influences DNA replication fork stability and homologous recombination through ubiquitylation of RAD51.

Chu WK, Payne MJ, Beli P, Hanada K, Choudhary C, Hickson ID.

Nat Commun. 2015 Jan 14;6:5931. doi: 10.1038/ncomms6931.

PMID:
25585578
27.

Proteome-wide analysis of SUMO2 targets in response to pathological DNA replication stress in human cells.

Bursomanno S, Beli P, Khan AM, Minocherhomji S, Wagner SA, Bekker-Jensen S, Mailand N, Choudhary C, Hickson ID, Liu Y.

DNA Repair (Amst). 2015 Jan;25:84-96. doi: 10.1016/j.dnarep.2014.10.011. Epub 2014 Nov 25.

PMID:
25497329
28.

UBL5 is essential for pre-mRNA splicing and sister chromatid cohesion in human cells.

Oka Y, Varmark H, Vitting-Seerup K, Beli P, Waage J, Hakobyan A, Mistrik M, Choudhary C, Rohde M, Bekker-Jensen S, Mailand N.

EMBO Rep. 2014 Sep;15(9):956-64. doi: 10.15252/embr.201438679. Epub 2014 Aug 4.

29.

A new cellular stress response that triggers centriolar satellite reorganization and ciliogenesis.

Villumsen BH, Danielsen JR, Povlsen L, Sylvestersen KB, Merdes A, Beli P, Yang YG, Choudhary C, Nielsen ML, Mailand N, Bekker-Jensen S.

EMBO J. 2013 Nov 27;32(23):3029-40. doi: 10.1038/emboj.2013.223. Epub 2013 Oct 11.

30.

Acetyl-phosphate is a critical determinant of lysine acetylation in E. coli.

Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.

Mol Cell. 2013 Jul 25;51(2):265-72. doi: 10.1016/j.molcel.2013.06.003. Epub 2013 Jul 3.

31.

DVC1 (C1orf124) is a DNA damage-targeting p97 adaptor that promotes ubiquitin-dependent responses to replication blocks.

Mosbech A, Gibbs-Seymour I, Kagias K, Thorslund T, Beli P, Povlsen L, Nielsen SV, Smedegaard S, Sedgwick G, Lukas C, Hartmann-Petersen R, Lukas J, Choudhary C, Pocock R, Bekker-Jensen S, Mailand N.

Nat Struct Mol Biol. 2012 Nov;19(11):1084-92. doi: 10.1038/nsmb.2395. Epub 2012 Oct 7.

PMID:
23042605
32.

Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.

Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.

Nat Cell Biol. 2012 Oct;14(10):1089-98. doi: 10.1038/ncb2579. Epub 2012 Sep 23.

PMID:
23000965
33.

Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.

Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.

Mol Cell Proteomics. 2012 Dec;11(12):1578-85. doi: 10.1074/mcp.M112.017905. Epub 2012 Jul 11.

34.

Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response.

Beli P, Lukashchuk N, Wagner SA, Weinert BT, Olsen JV, Baskcomb L, Mann M, Jackson SP, Choudhary C.

Mol Cell. 2012 Apr 27;46(2):212-25. doi: 10.1016/j.molcel.2012.01.026. Epub 2012 Mar 15.

35.

A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.

Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.

Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. doi: 10.1074/mcp.M111.013284. Epub 2011 Sep 1.

36.

WAVE and Arp2/3 jointly inhibit filopodium formation by entering into a complex with mDia2.

Beli P, Mascheroni D, Xu D, Innocenti M.

Nat Cell Biol. 2008 Jul;10(7):849-57. doi: 10.1038/ncb1745. Epub 2008 May 30.

PMID:
18516090

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