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Items: 18


A targeted genotyping-by-sequencing tool (Rapture) for genomics-assisted breeding in oat.

Bekele WA, Itaya A, Boyle B, Yan W, Mitchell Fetch J, Tinker NA.

Theor Appl Genet. 2019 Dec 4. doi: 10.1007/s00122-019-03496-w. [Epub ahead of print]


Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species.

Maughan PJ, Lee R, Walstead R, Vickerstaff RJ, Fogarty MC, Brouwer CR, Reid RR, Jay JJ, Bekele WA, Jackson EW, Tinker NA, Langdon T, Schlueter JA, Jellen EN.

BMC Biol. 2019 Nov 22;17(1):92. doi: 10.1186/s12915-019-0712-y.


Mapping of the stem rust resistance gene Pg13 in cultivated oat.

Kebede AZ, Admassu-Yimer B, Bekele WA, Gordon T, Bonman JM, Babiker E, Jin Y, Gale S, Wight CP, Tinker NA, Menzies JG, Beattie AD, Mitchell Fetch J, Fetch TG, Esvelt Klos K, McCartney CA.

Theor Appl Genet. 2019 Oct 21. doi: 10.1007/s00122-019-03455-5. [Epub ahead of print]


Comparative linkage mapping of diploid, tetraploid, and hexaploid Avena species suggests extensive chromosome rearrangement in ancestral diploids.

Latta RG, Bekele WA, Wight CP, Tinker NA.

Sci Rep. 2019 Aug 23;9(1):12298. doi: 10.1038/s41598-019-48639-7.


Haplotype-based genotyping-by-sequencing in oat genome research.

Bekele WA, Wight CP, Chao S, Howarth CJ, Tinker NA.

Plant Biotechnol J. 2018 Aug;16(8):1452-1463. doi: 10.1111/pbi.12888. Epub 2018 Mar 25.


Population Genomics Related to Adaptation in Elite Oat Germplasm.

Esvelt Klos K, Huang YF, Bekele WA, Obert DE, Babiker E, Beattie AD, Bjørnstad Å, Bonman JM, Carson ML, Chao S, Gnanesh BN, Griffiths I, Harrison SA, Howarth CJ, Hu G, Ibrahim A, Islamovic E, Jackson EW, Jannink JL, Kolb FL, McMullen MS, Mitchell Fetch J, Murphy JP, Ohm HW, Rines HW, Rossnagel BG, Schlueter JA, Sorrells ME, Wight CP, Yan W, Tinker NA.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.10.0103.


A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement.

Chaffin AS, Huang YF, Smith S, Bekele WA, Babiker E, Gnanesh BN, Foresman BJ, Blanchard SG, Jay JJ, Reid RW, Wight CP, Chao S, Oliver R, Islamovic E, Kolb FL, McCartney C, Mitchell Fetch JW, Beattie AD, Bjørnstad Å, Bonman JM, Langdon T, Howarth CJ, Brouwer CR, Jellen EN, Klos KE, Poland JA, Hsieh TF, Brown R, Jackson E, Schlueter JA, Tinker NA.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.10.0102.


High-density marker profiling confirms ancestral genomes of Avena species and identifies D-genome chromosomes of hexaploid oat.

Yan H, Bekele WA, Wight CP, Peng Y, Langdon T, Latta RG, Fu YB, Diederichsen A, Howarth CJ, Jellen EN, Boyle B, Wei Y, Tinker NA.

Theor Appl Genet. 2016 Nov;129(11):2133-2149. Epub 2016 Aug 13.


Erratum to: SorGSD: a sorghum genome SNP database.

Luo H, Zhao W, Wang Y, Xia Y, Wu X, Zhang L, Tang B, Zhu J, Fang L, Du Z, Bekele WA, Tai S, Jordan DR, Godwin ID, Snowdon RJ, Mace ES, Luo J, Jing HC.

Biotechnol Biofuels. 2016 Feb 15;9:37. doi: 10.1186/s13068-016-0450-0. eCollection 2016.


Genome size variation in the genus Avena.

Yan H, Martin SL, Bekele WA, Latta RG, Diederichsen A, Peng Y, Tinker NA.

Genome. 2016 Mar;59(3):209-20. doi: 10.1139/gen-2015-0132. Epub 2016 Jan 17.


Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis.

Tinker NA, Bekele WA, Hattori J.

G3 (Bethesda). 2016 Apr 7;6(4):857-63. doi: 10.1534/g3.115.024596.


SorGSD: a sorghum genome SNP database.

Luo H, Zhao W, Wang Y, Xia Y, Wu X, Zhang L, Tang B, Zhu J, Fang L, Du Z, Bekele WA, Tai S, Jordan DR, Godwin ID, Snowdon RJ, Mace ES, Jing HC, Luo J.

Biotechnol Biofuels. 2016 Jan 7;9:6. doi: 10.1186/s13068-015-0415-8. eCollection 2016. Erratum in: Biotechnol Biofuels. 2016;9:37.


Genetic dissection of temperature-dependent sorghum growth during juvenile development.

Fiedler K, Bekele WA, Duensing R, Gründig S, Snowdon R, Stützel H, Zacharias A, Uptmoor R.

Theor Appl Genet. 2014 Sep;127(9):1935-48. doi: 10.1007/s00122-014-2350-7. Epub 2014 Jul 15.


Camelus dromedarius brucellosis and its public health associated risks in the Afar National Regional State in northeastern Ethiopia.

Bekele WA, Tessema TS, Melaku SK.

Acta Vet Scand. 2013 Dec 17;55:89. doi: 10.1186/1751-0147-55-89.


Unravelling the genetic complexity of sorghum seedling development under low-temperature conditions.

Bekele WA, Fiedler K, Shiringani A, Schnaubelt D, Windpassinger S, Uptmoor R, Friedt W, Snowdon RJ.

Plant Cell Environ. 2014 Mar;37(3):707-23. doi: 10.1111/pce.12189. Epub 2013 Sep 22.


High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array.

Bekele WA, Wieckhorst S, Friedt W, Snowdon RJ.

Plant Biotechnol J. 2013 Dec;11(9):1112-25. doi: 10.1111/pbi.12106. Epub 2013 Aug 7.


Genetic dissection of the temperature dependent emergence processes in sorghum using a cumulative emergence model and stability parameters.

Fiedler K, Bekele WA, Friedt W, Snowdon R, Stützel H, Zacharias A, Uptmoor R.

Theor Appl Genet. 2012 Dec;125(8):1647-61. doi: 10.1007/s00122-012-1941-4. Epub 2012 Jul 31.


A tailed PCR procedure for cost-effective, two-order multiplex sequencing of candidate genes in polyploid plants.

Gholami M, Bekele WA, Schondelmaier J, Snowdon RJ.

Plant Biotechnol J. 2012 Aug;10(6):635-45. doi: 10.1111/j.1467-7652.2012.00696.x. Epub 2012 Apr 11.

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