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Items: 1 to 50 of 80

1.

The Purple Sea Urchin Strongylocentrotus purpuratus Demonstrates a Compartmentalization of Gut Bacterial Microbiota, Predictive Functional Attributes, and Taxonomic Co-Occurrence.

Hakim JA, Schram JB, Galloway AWE, Morrow CD, Crowley MR, Watts SA, Bej AK.

Microorganisms. 2019 Jan 26;7(2). pii: E35. doi: 10.3390/microorganisms7020035.

2.

Metagenomic Analysis of Microbial Community Compositions and Cold-Responsive Stress Genes in Selected Antarctic Lacustrine and Soil Ecosystems.

Koo H, Hakim JA, Morrow CD, Crowley MR, Andersen DT, Bej AK.

Life (Basel). 2018 Jul 11;8(3). pii: E29. doi: 10.3390/life8030029.

3.

Microbial Communities and Their Predicted Metabolic Functions in Growth Laminae of a Unique Large Conical Mat from Lake Untersee, East Antarctica.

Koo H, Mojib N, Hakim JA, Hawes I, Tanabe Y, Andersen DT, Bej AK.

Front Microbiol. 2017 Aug 4;8:1347. doi: 10.3389/fmicb.2017.01347. eCollection 2017.

4.

Comparison of two bioinformatics tools used to characterize the microbial diversity and predictive functional attributes of microbial mats from Lake Obersee, Antarctica.

Koo H, Hakim JA, Morrow CD, Eipers PG, Davila A, Andersen DT, Bej AK.

J Microbiol Methods. 2017 Sep;140:15-22. doi: 10.1016/j.mimet.2017.06.017. Epub 2017 Jun 24.

5.

Metagenomics approach to the study of the gut microbiome structure and function in zebrafish Danio rerio fed with gluten formulated diet.

Koo H, Hakim JA, Powell ML, Kumar R, Eipers PG, Morrow CD, Crowley M, Lefkowitz EJ, Watts SA, Bej AK.

J Microbiol Methods. 2017 Apr;135:69-76. doi: 10.1016/j.mimet.2017.01.016. Epub 2017 Feb 3.

6.

The gut microbiome of the sea urchin, Lytechinus variegatus, from its natural habitat demonstrates selective attributes of microbial taxa and predictive metabolic profiles.

Hakim JA, Koo H, Kumar R, Lefkowitz EJ, Morrow CD, Powell ML, Watts SA, Bej AK.

FEMS Microbiol Ecol. 2016 Sep;92(9). pii: fiw146. doi: 10.1093/femsec/fiw146. Epub 2016 Jul 1.

7.

Metagenomic data of the bacterial community in coastal Gulf of Mexico sediment microcosms following exposure to Macondo oil (MC252).

Koo H, Bej AK.

Data Brief. 2015 Nov 26;6:89-93. doi: 10.1016/j.dib.2015.11.040. eCollection 2016 Mar.

8.

Draft Genome Sequence of Janthinobacterium sp. Ant5-2-1, Isolated from Proglacial Lake Podprudnoye in the Schirmacher Oasis of East Antarctica.

Koo H, Strope BM, Kim EH, Shabani AM, Kumar R, Crowley MR, Andersen DT, Bej AK.

Genome Announc. 2016 Jan 21;4(1). pii: e01600-15. doi: 10.1128/genomeA.01600-15.

9.

Distribution of cold adaptation proteins in microbial mats in Lake Joyce, Antarctica: Analysis of metagenomic data by using two bioinformatics tools.

Koo H, Hakim JA, Fisher PR, Grueneberg A, Andersen DT, Bej AK.

J Microbiol Methods. 2016 Jan;120:23-8. doi: 10.1016/j.mimet.2015.11.008. Epub 2015 Nov 11.

PMID:
26578243
10.

An abundance of Epsilonproteobacteria revealed in the gut microbiome of the laboratory cultured sea urchin, Lytechinus variegatus.

Hakim JA, Koo H, Dennis LN, Kumar R, Ptacek T, Morrow CD, Lefkowitz EJ, Powell ML, Bej AK, Watts SA.

Front Microbiol. 2015 Oct 13;6:1047. doi: 10.3389/fmicb.2015.01047. eCollection 2015.

11.

Bacterial community shift in the coastal Gulf of Mexico salt-marsh sediment microcosm in vitro following exposure to the Mississippi Canyon Block 252 oil (MC252).

Koo H, Mojib N, Huang JP, Donahoe RJ, Bej AK.

3 Biotech. 2015 Aug;5(4):379-392. doi: 10.1007/s13205-014-0233-x. Epub 2014 Jul 10.

12.

Comparative analysis of bacterial community-metagenomics in coastal Gulf of Mexico sediment microcosms following exposure to Macondo oil (MC252).

Koo H, Mojib N, Thacker RW, Bej AK.

Antonie Van Leeuwenhoek. 2014 Nov;106(5):993-1009. doi: 10.1007/s10482-014-0268-3. Epub 2014 Sep 10.

PMID:
25205599
13.

Draft Genome Sequence of Hymenobacter sp. Strain IS2118, Isolated from a Freshwater Lake in Schirmacher Oasis, Antarctica, Reveals Diverse Genes for Adaptation to Cold Ecosystems.

Koo H, Ptacek T, Crowley M, Swain AK, Osborne JD, Bej AK, Andersen DT.

Genome Announc. 2014 Aug 7;2(4). pii: e00739-14. doi: 10.1128/genomeA.00739-14.

14.

Draft Genome Sequence of Pseudomonas sp. Strain Ant30-3, a Psychrotolerant Bacterium with Biodegradative Attribute Isolated from Antarctica.

Koo H, Basu MK, Crowley M, Aislabie J, Bej AK.

Genome Announc. 2014 Jun 5;2(3). pii: e00522-14. doi: 10.1128/genomeA.00522-14.

15.

[The discovery of phages in the bacterial population in lake Untersee (Antarctica)].

Filippova SN, Surgucheva NA, Kulikov EE, Sorokin VV, Akimov VN, Bej AK, McKay C, Andersen D, Gal'chenko VF.

Mikrobiologiia. 2013 May-Jun;82(3):366-9. Russian. No abstract available.

PMID:
24466739
16.

UV and cold tolerance of a pigment-producing Antarctic Janthinobacterium sp. Ant5-2.

Mojib N, Farhoomand A, Andersen DT, Bej AK.

Extremophiles. 2013 May;17(3):367-78. doi: 10.1007/s00792-013-0525-9. Epub 2013 Mar 20.

PMID:
23512118
17.

Bacterial diversity of the rock-water interface in an East Antarctic freshwater ecosystem, Lake Tawani(P)†.

Huang JP, Swain AK, Thacker RW, Ravindra R, Andersen DT, Bej AK.

Aquat Biosyst. 2013 Feb 1;9(1):4. doi: 10.1186/2046-9063-9-4.

18.
19.

Bacterial gene expression at low temperatures.

Trevors JT, Bej AK, Mojib N, van Elsas JD, Van Overbeek L.

Extremophiles. 2012 Mar;16(2):167-76. doi: 10.1007/s00792-011-0423-y. Epub 2012 Jan 3. Review.

PMID:
22212655
20.

The antiproliferative function of violacein-like purple violet pigment (PVP) from an Antarctic Janthinobacterium sp. Ant5-2 in UV-induced 2237 fibrosarcoma.

Mojib N, Nasti TH, Andersen DT, Attigada VR, Hoover RB, Yusuf N, Bej AK.

Int J Dermatol. 2011 Oct;50(10):1223-33. doi: 10.1111/j.1365-4632.2010.04825.x. Epub 2011 Jul 26.

21.

Structure and function of a cold shock domain fold protein, CspD, in Janthinobacterium sp. Ant5-2 from East Antarctica.

Mojib N, Andersen DT, Bej AK.

FEMS Microbiol Lett. 2011 Jun;319(2):106-14. doi: 10.1111/j.1574-6968.2011.02269.x. Epub 2011 Apr 18.

22.

Antimycobacterial activity in vitro of pigments isolated from Antarctic bacteria.

Mojib N, Philpott R, Huang JP, Niederweis M, Bej AK.

Antonie Van Leeuwenhoek. 2010 Nov;98(4):531-40. doi: 10.1007/s10482-010-9470-0. Epub 2010 Jun 17.

PMID:
20556653
23.

Multiplexed real-time PCR amplification of tlh, tdh and trh genes in Vibrio parahaemolyticus and its rapid detection in shellfish and Gulf of Mexico water.

Rizvi AV, Bej AK.

Antonie Van Leeuwenhoek. 2010 Oct;98(3):279-90. doi: 10.1007/s10482-010-9436-2. Epub 2010 Apr 8.

PMID:
20376562
24.

Occurrence and distribution of capB in Antarctic microorganisms and study of its structure and regulation in the Antarctic biodegradative Pseudomonas sp. 30/3.

Panicker G, Mojib N, Nakatsuji T, Aislabie J, Bej AK.

Extremophiles. 2010 Mar;14(2):171-83. doi: 10.1007/s00792-009-0296-5. Epub 2009 Dec 20.

PMID:
20091073
25.

Detection, expression and quantitation of the biodegradative genes in Antarctic microorganisms using PCR.

Panicker G, Mojib N, Aislabie J, Bej AK.

Antonie Van Leeuwenhoek. 2010 Mar;97(3):275-87. doi: 10.1007/s10482-009-9408-6. Epub 2009 Dec 31.

PMID:
20043207
26.

Spirochaeta dissipatitropha sp. nov., an alkaliphilic, obligately anaerobic bacterium, and emended description of the genus Spirochaeta Ehrenberg 1835.

Pikuta EV, Hoover RB, Bej AK, Marsic D, Whitman WB, Krader P.

Int J Syst Evol Microbiol. 2009 Jul;59(Pt 7):1798-804. doi: 10.1099/ijs.0.65862-0. Erratum in: Int J Syst Evol Microbiol. 2009 Oct;59(Pt 10):2646.

PMID:
19578151
27.

Thermococcus thioreducens sp. nov., a novel hyperthermophilic, obligately sulfur-reducing archaeon from a deep-sea hydrothermal vent.

Pikuta EV, Marsic D, Itoh T, Bej AK, Tang J, Whitman WB, Ng JD, Garriott OK, Hoover RB.

Int J Syst Evol Microbiol. 2007 Jul;57(Pt 7):1612-8.

PMID:
17625204
28.

Tsukamurella spongiae sp. nov., a novel actinomycete isolated from a deep-water marine sponge.

Olson JB, Harmody DK, Bej AK, McCarthy PJ.

Int J Syst Evol Microbiol. 2007 Jul;57(Pt 7):1478-81.

PMID:
17625179
29.

Trichococcus patagoniensis sp. nov., a facultative anaerobe that grows at -5 degrees C, isolated from penguin guano in Chilean Patagonia.

Pikuta EV, Hoover RB, Bej AK, Marsic D, Whitman WB, Krader PE, Tang J.

Int J Syst Evol Microbiol. 2006 Sep;56(Pt 9):2055-62.

PMID:
16957099
30.
31.
32.

Characterization of Arthrobacter nicotinovorans HIM, an atrazine-degrading bacterium, from agricultural soil New Zealand.

Aislabie J, Bej AK, Ryburn J, Lloyd N, Wilkins A.

FEMS Microbiol Ecol. 2005 Apr 1;52(2):279-86. Epub 2004 Dec 24.

33.
34.

Multiplex PCR detection of clinical and environmental strains of Vibrio vulnificus in shellfish.

Panicker G, Vickery MC, Bej AK.

Can J Microbiol. 2004 Nov;50(11):911-22. Erratum in: Can J Microbiol. 2007 May;53(5):671.

PMID:
15644908
35.

Detection of pathogenic Vibrio spp. in shellfish by using multiplex PCR and DNA microarrays.

Panicker G, Call DR, Krug MJ, Bej AK.

Appl Environ Microbiol. 2004 Dec;70(12):7436-44.

36.

Real-time PCR quantification of Vibrio parahaemolyticus in oysters using an alternative matrix.

Kaufman GE, Blackstone GM, Vickery MC, Bej AK, Bowers J, Bowen MD, Meyer RF, DePaola A.

J Food Prot. 2004 Nov;67(11):2424-9.

PMID:
15553623
37.

Rapid detection of Vibrio vulnificus in shellfish and Gulf of Mexico water by real-time PCR.

Panicker G, Myers ML, Bej AK.

Appl Environ Microbiol. 2004 Jan;70(1):498-507.

38.

Desulfonatronum thiodismutans sp. nov., a novel alkaliphilic, sulfate-reducing bacterium capable of lithoautotrophic growth.

Pikuta EV, Hoover RB, Bej AK, Marsic D, Whitman WB, Cleland D, Krader P.

Int J Syst Evol Microbiol. 2003 Sep;53(Pt 5):1327-32.

PMID:
13130014
39.

Spirochaeta americana sp. nov., a new haloalkaliphilic, obligately anaerobic spirochaete isolated from soda Mono Lake in California.

Hoover RB, Pikuta EV, Bej AK, Marsic D, Whitman WB, Tang J, Krader P.

Int J Syst Evol Microbiol. 2003 May;53(Pt 3):815-21.

PMID:
12807206
40.

Tindallia californiensis sp. nov., a new anaerobic, haloalkaliphilic, spore-forming acetogen isolated from Mono Lake in California.

Pikuta EV, Hoover RB, Bej AK, Marsic D, Detkova EN, Whitman WB, Krader P.

Extremophiles. 2003 Aug;7(4):327-34. Epub 2003 May 1.

PMID:
12728359
41.
42.
43.

Molecular based methods for the detection of microbial pathogens in the environment.

Bej AK.

J Microbiol Methods. 2003 May;53(2):139-40. No abstract available.

PMID:
12654484
44.

Oyster-to-oyster variability in levels of Vibrio parahaemolyticus.

Kaufman GE, Bej AK, Bowers J, DePaola A.

J Food Prot. 2003 Jan;66(1):125-9.

PMID:
12540193
45.

Molecular analysis of Vibrio parahaemolyticus isolated from human patients and shellfish during US Pacific north-west outbreaks.

Kaufman GE, Myers ML, Pass CL, Bej AK, Kaysner CA.

Lett Appl Microbiol. 2002;34(3):155-61.

46.

Response and tolerance of toxigenic Vibro cholerae O1 to cold temperatures.

Carroll JW, Mateescu MC, Chava K, Colwell RR, Bej AK.

Antonie Van Leeuwenhoek. 2001 Sep;79(3-4):377-84.

PMID:
11816983
48.

Adaptive response to cold temperatures and characterization of cspA in Salmonella typhimurium LT2.

Horton AJ, Hak KM, Steffan RJ, Foster JW, Bej AK.

Antonie Van Leeuwenhoek. 2000 Jan;77(1):13-20.

PMID:
10696873
49.

Detection of total and hemolysin-producing Vibrio parahaemolyticus in shellfish using multiplex PCR amplification of tl, tdh and trh.

Bej AK, Patterson DP, Brasher CW, Vickery MC, Jones DD, Kaysner CA.

J Microbiol Methods. 1999 Jun;36(3):215-25.

PMID:
10379807
50.

Adaptive response to cold temperatures in Vibrio vulnificus.

Bryan PJ, Steffan RJ, DePaola A, Foster JW, Bej AK.

Curr Microbiol. 1999 Mar;38(3):168-75.

PMID:
9922468

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