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Items: 21

1.

Intraspecific Variation in Protists: Clues for Microevolution from Poteriospumella lacustris (Chrysophyceae).

Majda S, Boenigk J, Beisser D.

Genome Biol Evol. 2019 Sep 1;11(9):2492-2504. doi: 10.1093/gbe/evz171.

2.

Interaction-Specific Changes in the Transcriptome of Polynucleobacter asymbioticus Caused by Varying Protistan Communities.

Beisser D, Bock C, Hahn MW, Vos M, Sures B, Rahmann S, Boenigk J.

Front Microbiol. 2019 Jul 9;10:1498. doi: 10.3389/fmicb.2019.01498. eCollection 2019.

3.

Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data.

Kraus D, Chi J, Boenigk J, Beisser D, Graupner N, Dunthorn M.

PeerJ. 2019 Jan 16;6:e5894. doi: 10.7717/peerj.5894. eCollection 2019.

4.

Silver stress differentially affects growth of phototrophic and heterotrophic chrysomonad flagellate populations.

Bock C, Zimmermann S, Beisser D, Dinglinger SM, Engelskirchen S, Giesemann P, Klink S, Olefeld JL, Rahmann S, Vos M, Boenigk J, Sures B.

Environ Pollut. 2019 Jan;244:314-322. doi: 10.1016/j.envpol.2018.09.146. Epub 2018 Oct 11.

PMID:
30343232
5.

Evolution of heterotrophy in chrysophytes as reflected by comparative transcriptomics.

Graupner N, Jensen M, Bock C, Marks S, Rahmann S, Beisser D, Boenigk J.

FEMS Microbiol Ecol. 2018 Apr 1;94(4). doi: 10.1093/femsec/fiy039.

6.

TaxMapper: an analysis tool, reference database and workflow for metatranscriptome analysis of eukaryotic microorganisms.

Beisser D, Graupner N, Grossmann L, Timm H, Boenigk J, Rahmann S.

BMC Genomics. 2017 Oct 16;18(1):787. doi: 10.1186/s12864-017-4168-6.

7.

Comprehensive transcriptome analysis provides new insights into nutritional strategies and phylogenetic relationships of chrysophytes.

Beisser D, Graupner N, Bock C, Wodniok S, Grossmann L, Vos M, Sures B, Rahmann S, Boenigk J.

PeerJ. 2017 Jan 10;5:e2832. doi: 10.7717/peerj.2832. eCollection 2017.

8.

Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis.

Beisser D, Kaschani F, Graupner N, Grossmann L, Jensen M, Ninck S, Schulz F, Rahmann S, Boenigk J, Kaiser M.

PLoS One. 2017 Jan 5;12(1):e0168183. doi: 10.1371/journal.pone.0168183. eCollection 2017.

9.

Characterization of pancreatic glucagon-producing tumors and pituitary gland tumors in transgenic mice overexpressing MYCN in hGFAP-positive cells.

Fielitz K, Althoff K, De Preter K, Nonnekens J, Ohli J, Elges S, Hartmann W, Klöppel G, Knösel T, Schulte M, Klein-Hitpass L, Beisser D, Reis H, Eyking A, Cario E, Schulte JH, Schramm A, Schüller U.

Oncotarget. 2016 Nov 15;7(46):74415-74426. doi: 10.18632/oncotarget.12766.

10.

Trade-off between taxon diversity and functional diversity in European lake ecosystems.

Grossmann L, Beisser D, Bock C, Chatzinotas A, Jensen M, Preisfeld A, Psenner R, Rahmann S, Wodniok S, Boenigk J.

Mol Ecol. 2016 Dec;25(23):5876-5888. doi: 10.1111/mec.13878. Epub 2016 Nov 14.

PMID:
27747959
11.

Epigenetic dynamics of monocyte-to-macrophage differentiation.

Wallner S, Schröder C, Leitão E, Berulava T, Haak C, Beißer D, Rahmann S, Richter AS, Manke T, Bönisch U, Arrigoni L, Fröhler S, Klironomos F, Chen W, Rajewsky N, Müller F, Ebert P, Lengauer T, Barann M, Rosenstiel P, Gasparoni G, Nordström K, Walter J, Brors B, Zipprich G, Felder B, Klein-Hitpass L, Attenberger C, Schmitz G, Horsthemke B.

Epigenetics Chromatin. 2016 Jul 29;9:33. doi: 10.1186/s13072-016-0079-z. eCollection 2016.

12.

Human TLR8 senses UR/URR motifs in bacterial and mitochondrial RNA.

Krüger A, Oldenburg M, Chebrolu C, Beisser D, Kolter J, Sigmund AM, Steinmann J, Schäfer S, Hochrein H, Rahmann S, Wagner H, Henneke P, Hornung V, Buer J, Kirschning CJ.

EMBO Rep. 2015 Dec;16(12):1656-63. doi: 10.15252/embr.201540861. Epub 2015 Nov 6.

13.

Mutational dynamics between primary and relapse neuroblastomas.

Schramm A, Köster J, Assenov Y, Althoff K, Peifer M, Mahlow E, Odersky A, Beisser D, Ernst C, Henssen AG, Stephan H, Schröder C, Heukamp L, Engesser A, Kahlert Y, Theissen J, Hero B, Roels F, Altmüller J, Nürnberg P, Astrahantseff K, Gloeckner C, De Preter K, Plass C, Lee S, Lode HN, Henrich KO, Gartlgruber M, Speleman F, Schmezer P, Westermann F, Rahmann S, Fischer M, Eggert A, Schulte JH.

Nat Genet. 2015 Aug;47(8):872-7. doi: 10.1038/ng.3349. Epub 2015 Jun 29.

PMID:
26121086
14.

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model.

El-Kebir M, Soueidan H, Hume T, Beisser D, Dittrich M, Müller T, Blin G, Heringa J, Nikolski M, Wessels LF, Klau GW.

Bioinformatics. 2015 Oct 1;31(19):3147-55. doi: 10.1093/bioinformatics/btv316. Epub 2015 May 27.

PMID:
26023104
15.

Effects of silver nitrate and silver nanoparticles on a planktonic community: general trends after short-term exposure.

Boenigk J, Beisser D, Zimmermann S, Bock C, Jakobi J, Grabner D, Groβmann L, Rahmann S, Barcikowski S, Sures B.

PLoS One. 2014 Apr 22;9(4):e95340. doi: 10.1371/journal.pone.0095340. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e107092.

16.

Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum.

Beisser D, Grohme MA, Kopka J, Frohme M, Schill RO, Hengherr S, Dandekar T, Klau GW, Dittrich M, Müller T.

BMC Syst Biol. 2012 Jun 19;6:72. doi: 10.1186/1752-0509-6-72.

17.

Robustness and accuracy of functional modules in integrated network analysis.

Beisser D, Brunkhorst S, Dandekar T, Klau GW, Dittrich MT, Müller T.

Bioinformatics. 2012 Jul 15;28(14):1887-94. doi: 10.1093/bioinformatics/bts265. Epub 2012 May 11.

PMID:
22581175
18.

Transcriptome analysis in tardigrade species reveals specific molecular pathways for stress adaptations.

Förster F, Beisser D, Grohme MA, Liang C, Mali B, Siegl AM, Engelmann JC, Shkumatov AV, Schokraie E, Müller T, Schnölzer M, Schill RO, Frohme M, Dandekar T.

Bioinform Biol Insights. 2012;6:69-96. doi: 10.4137/BBI.S9150. Epub 2012 Apr 23.

19.

BioNet: an R-Package for the functional analysis of biological networks.

Beisser D, Klau GW, Dandekar T, Müller T, Dittrich MT.

Bioinformatics. 2010 Apr 15;26(8):1129-30. doi: 10.1093/bioinformatics/btq089. Epub 2010 Feb 25.

PMID:
20189939
20.

Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades.

Förster F, Liang C, Shkumatov A, Beisser D, Engelmann JC, Schnölzer M, Frohme M, Müller T, Schill RO, Dandekar T.

BMC Genomics. 2009 Oct 12;10:469. doi: 10.1186/1471-2164-10-469.

21.

[Studies on the problem of the effect of harelip formation on the dimensions of the maxillary antra].

ECKEL W, BEISSER D.

Z Laryngol Rhinol Otol. 1961 Jan;40:23-31. German. No abstract available.

PMID:
13725598

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