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Items: 1 to 50 of 106

1.

Cell-Specific Transcriptome Analysis Shows That Adult Pillar and Deiters' Cells Express Genes Encoding Machinery for Specializations of Cochlear Hair Cells.

Liu H, Chen L, Giffen KP, Stringham ST, Li Y, Judge PD, Beisel KW, He DZZ.

Front Mol Neurosci. 2018 Oct 1;11:356. doi: 10.3389/fnmol.2018.00356. eCollection 2018.

2.

Transcriptomes of cochlear inner and outer hair cells from adult mice.

Li Y, Liu H, Giffen KP, Chen L, Beisel KW, He DZZ.

Sci Data. 2018 Oct 2;5:180199. doi: 10.1038/sdata.2018.199.

3.

Characterization of Hair Cell-Like Cells Converted From Supporting Cells After Notch Inhibition in Cultures of the Organ of Corti From Neonatal Gerbils.

Li Y, Jia S, Liu H, Tateya T, Guo W, Yang S, Beisel KW, He DZZ.

Front Cell Neurosci. 2018 Mar 20;12:73. doi: 10.3389/fncel.2018.00073. eCollection 2018.

4.

RNA-seq transcriptomic analysis of adult zebrafish inner ear hair cells.

Barta CL, Liu H, Chen L, Giffen KP, Li Y, Kramer KL, Beisel KW, He DZ.

Sci Data. 2018 Feb 6;5:180005. doi: 10.1038/sdata.2018.5.

5.

Transcriptome-wide comparison of the impact of Atoh1 and miR-183 family on pluripotent stem cells and multipotent otic progenitor cells.

Ebeid M, Sripal P, Pecka J, Beisel KW, Kwan K, Soukup GA.

PLoS One. 2017 Jul 7;12(7):e0180855. doi: 10.1371/journal.pone.0180855. eCollection 2017.

6.

Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells.

Li Y, Liu H, Barta CL, Judge PD, Zhao L, Zhang WJ, Gong S, Beisel KW, He DZ.

PLoS One. 2016 Mar 14;11(3):e0151291. doi: 10.1371/journal.pone.0151291. eCollection 2016.

7.

Glutamate transporter homolog-based model predicts that anion-π interaction is the mechanism for the voltage-dependent response of prestin.

Lovas S, He DZ, Liu H, Tang J, Pecka JL, Hatfield MP, Beisel KW.

J Biol Chem. 2015 Oct 2;290(40):24326-39. doi: 10.1074/jbc.M115.649962. Epub 2015 Aug 17.

8.

Characterization of transcriptomes of cochlear inner and outer hair cells.

Liu H, Pecka JL, Zhang Q, Soukup GA, Beisel KW, He DZ.

J Neurosci. 2014 Aug 13;34(33):11085-95. doi: 10.1523/JNEUROSCI.1690-14.2014.

9.

Prestin at year 14: progress and prospect.

He DZ, Lovas S, Ai Y, Li Y, Beisel KW.

Hear Res. 2014 May;311:25-35. doi: 10.1016/j.heares.2013.12.002. Epub 2013 Dec 17. Review.

10.

Lizard and frog prestin: evolutionary insight into functional changes.

Tang J, Pecka JL, Fritzsch B, Beisel KW, He DZ.

PLoS One. 2013;8(1):e54388. doi: 10.1371/journal.pone.0054388. Epub 2013 Jan 16.

11.

Proteomic analysis of the organ of corti using nanoscale liquid chromatography coupled with tandem mass spectrometry.

Peng H, Liu M, Pecka J, Beisel KW, Ding SJ.

Int J Mol Sci. 2012;13(7):8171-88. doi: 10.3390/ijms13078171. Epub 2012 Jul 2.

12.

A motif of eleven amino acids is a structural adaptation that facilitates motor capability of eutherian prestin.

Tan X, Pecka JL, Tang J, Lovas S, Beisel KW, He DZ.

J Cell Sci. 2012 Feb 15;125(Pt 4):1039-47. doi: 10.1242/jcs.097337. Epub 2012 Mar 7.

13.

Expression of Neurog1 instead of Atoh1 can partially rescue organ of Corti cell survival.

Jahan I, Pan N, Kersigo J, Calisto LE, Morris KA, Kopecky B, Duncan JS, Beisel KW, Fritzsch B.

PLoS One. 2012;7(1):e30853. doi: 10.1371/journal.pone.0030853. Epub 2012 Jan 24.

14.

Engineered pendrin protein, an anion transporter and molecular motor.

Tang J, Pecka JL, Tan X, Beisel KW, He DZ.

J Biol Chem. 2011 Sep 2;286(35):31014-21. doi: 10.1074/jbc.M111.259564. Epub 2011 Jul 13.

15.

MicroRNA-183 family expression in hair cell development and requirement of microRNAs for hair cell maintenance and survival.

Weston MD, Pierce ML, Jensen-Smith HC, Fritzsch B, Rocha-Sanchez S, Beisel KW, Soukup GA.

Dev Dyn. 2011 Apr;240(4):808-19. doi: 10.1002/dvdy.22591. Epub 2011 Feb 28.

16.

From zebrafish to mammal: functional evolution of prestin, the motor protein of cochlear outer hair cells.

Tan X, Pecka JL, Tang J, Okoruwa OE, Zhang Q, Beisel KW, He DZ.

J Neurophysiol. 2011 Jan;105(1):36-44. doi: 10.1152/jn.00234.2010. Epub 2010 Nov 3.

17.

The role of bHLH genes in ear development and evolution: revisiting a 10-year-old hypothesis.

Fritzsch B, Eberl DF, Beisel KW.

Cell Mol Life Sci. 2010 Sep;67(18):3089-99. doi: 10.1007/s00018-010-0403-x. Epub 2010 May 22. Review.

18.

Calcium-dependent binding of HCN1 channel protein to hair cell stereociliary tip link protein protocadherin 15 CD3.

Ramakrishnan NA, Drescher MJ, Barretto RL, Beisel KW, Hatfield JS, Drescher DG.

J Biol Chem. 2009 Jan 30;284(5):3227-38. doi: 10.1074/jbc.M806177200. Epub 2008 Nov 13.

19.

Lmx1a is required for segregation of sensory epithelia and normal ear histogenesis and morphogenesis.

Nichols DH, Pauley S, Jahan I, Beisel KW, Millen KJ, Fritzsch B.

Cell Tissue Res. 2008 Dec;334(3):339-58. doi: 10.1007/s00441-008-0709-2. Epub 2008 Nov 5.

20.

Evolutionary insights into the unique electromotility motor of mammalian outer hair cells.

Okoruwa OE, Weston MD, Sanjeevi DC, Millemon AR, Fritzsch B, Hallworth R, Beisel KW.

Evol Dev. 2008 May-Jun;10(3):300-15. doi: 10.1111/j.1525-142X.2008.00239.x.

21.

Molecular evolution of the vertebrate mechanosensory cell and ear.

Fritzsch B, Beisel KW, Pauley S, Soukup G.

Int J Dev Biol. 2007;51(6-7):663-78. Review.

22.

Pocket proteins and cell cycle regulation in inner ear development.

Rocha-Sanchez SM, Beisel KW.

Int J Dev Biol. 2007;51(6-7):585-95. Review.

23.

Roles of alternative splicing in the functional properties of inner ear-specific KCNQ4 channels.

Xu T, Nie L, Zhang Y, Mo J, Feng W, Wei D, Petrov E, Calisto LE, Kachar B, Beisel KW, Vazquez AE, Yamoah EN.

J Biol Chem. 2007 Aug 17;282(33):23899-909. Epub 2007 Jun 7.

24.

Developmental expression of Kcnq4 in vestibular neurons and neurosensory epithelia.

Rocha-Sanchez SM, Morris KA, Kachar B, Nichols D, Fritzsch B, Beisel KW.

Brain Res. 2007 Mar 30;1139:117-25. Epub 2007 Jan 8.

25.
26.

Diversity of Ca2+-activated K+ channel transcripts in inner ear hair cells.

Beisel KW, Rocha-Sanchez SM, Ziegenbein SJ, Morris KA, Kai C, Kawai J, Carninci P, Hayashizaki Y, Davis RL.

Gene. 2007 Jan 15;386(1-2):11-23. Epub 2006 Aug 5.

PMID:
17097837
27.

MicroRNA gene expression in the mouse inner ear.

Weston MD, Pierce ML, Rocha-Sanchez S, Beisel KW, Soukup GA.

Brain Res. 2006 Sep 21;1111(1):95-104. Epub 2006 Aug 10.

PMID:
16904081
28.

Near-infrared laser illumination transforms the fluorescence absorbing X-Gal reaction product BCI into a transparent, yet brightly fluorescent substance.

Matei VA, Feng F, Pauley S, Beisel KW, Nichols MG, Fritzsch B.

Brain Res Bull. 2006 Jun 15;70(1):33-43. Epub 2005 Dec 9.

29.

Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs.

Maeda N, Kasukawa T, Oyama R, Gough J, Frith M, Engström PG, Lenhard B, Aturaliya RN, Batalov S, Beisel KW, Bult CJ, Fletcher CF, Forrest AR, Furuno M, Hill D, Itoh M, Kanamori-Katayama M, Katayama S, Katoh M, Kawashima T, Quackenbush J, Ravasi T, Ring BZ, Shibata K, Sugiura K, Takenaka Y, Teasdale RD, Wells CA, Zhu Y, Kai C, Kawai J, Hume DA, Carninci P, Hayashizaki Y.

PLoS Genet. 2006 Apr;2(4):e62.

30.

Cells, molecules and morphogenesis: the making of the vertebrate ear.

Fritzsch B, Pauley S, Beisel KW.

Brain Res. 2006 May 26;1091(1):151-71. Epub 2006 Apr 27. Review.

31.

Development and evolution of the vestibular sensory apparatus of the mammalian ear.

Beisel KW, Wang-Lundberg Y, Maklad A, Fritzsch B.

J Vestib Res. 2005;15(5-6):225-41. Review.

32.

Conditional and inducible gene recombineering in the mouse inner ear.

Tian Y, James S, Zuo J, Fritzsch B, Beisel KW.

Brain Res. 2006 May 26;1091(1):243-54. Epub 2006 Feb 20. Review.

33.

Differential expression of KCNQ4 in inner hair cells and sensory neurons is the basis of progressive high-frequency hearing loss.

Beisel KW, Rocha-Sanchez SM, Morris KA, Nie L, Feng F, Kachar B, Yamoah EN, Fritzsch B.

J Neurosci. 2005 Oct 5;25(40):9285-93.

34.

Smaller inner ear sensory epithelia in Neurog 1 null mice are related to earlier hair cell cycle exit.

Matei V, Pauley S, Kaing S, Rowitch D, Beisel KW, Morris K, Feng F, Jones K, Lee J, Fritzsch B.

Dev Dyn. 2005 Nov;234(3):633-50.

35.

The transcriptional landscape of the mammalian genome.

Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schönbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y; FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group).

Science. 2005 Sep 2;309(5740):1559-63. Erratum in: Science. 2006 Mar 24;311(5768):1713.

36.

Atoh1 null mice show directed afferent fiber growth to undifferentiated ear sensory epithelia followed by incomplete fiber retention.

Fritzsch B, Matei VA, Nichols DH, Bermingham N, Jones K, Beisel KW, Wang VY.

Dev Dyn. 2005 Jun;233(2):570-83.

37.

Differential expression of genes within the cochlea as defined by a custom mouse inner ear microarray.

Morris KA, Snir E, Pompeia C, Koroleva IV, Kachar B, Hayashizaki Y, Carninci P, Soares MB, Beisel KW.

J Assoc Res Otolaryngol. 2005 Mar;6(1):75-89. Epub 2005 Apr 22.

38.

Partial behavioral compensation is revealed in balance tasked mutant mice lacking otoconia.

de Caprona MD, Beisel KW, Nichols DH, Fritzsch B.

Brain Res Bull. 2004 Dec 15;64(4):289-301.

PMID:
15561463
40.

Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library.

Beisel KW, Shiraki T, Morris KA, Pompeia C, Kachar B, Arakawa T, Bono H, Kawai J, Hayashizaki Y, Carninci P.

Genomics. 2004 Jun;83(6):1012-23.

PMID:
15177555
41.

Molecular conservation and novelties in vertebrate ear development.

Fritzsch B, Beisel KW.

Curr Top Dev Biol. 2003;57:1-44. Review. No abstract available.

42.

Cloning and expression of a small-conductance Ca(2+)-activated K+ channel from the mouse cochlea: coexpression with alpha9/alpha10 acetylcholine receptors.

Nie L, Song H, Chen MF, Chiamvimonvat N, Beisel KW, Yamoah EN, Vázquez AE.

J Neurophysiol. 2004 Apr;91(4):1536-44. Epub 2003 Dec 3.

43.

Analysis of the mouse transcriptome for genes involved in the function of the nervous system.

Gustincich S, Batalov S, Beisel KW, Bono H, Carninci P, Fletcher CF, Grimmond S, Hirokawa N, Jarvis ED, Jegla T, Kawasawa Y, LeMieux J, Miki H, Raviola E, Teasdale RD, Tominaga N, Yagi K, Zimmer A, Hayashizaki Y, Okazaki Y; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1395-401.

44.

Chick hair cells do not exhibit voltage-dependent somatic motility.

He DZ, Beisel KW, Chen L, Ding DL, Jia S, Fritzsch B, Salvi R.

J Physiol. 2003 Jan 15;546(Pt 2):511-20.

45.

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.

Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schönbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y; FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I & II Team.

Nature. 2002 Dec 5;420(6915):563-73.

PMID:
12466851
46.

Development and evolution of inner ear sensory epithelia and their innervation.

Fritzsch B, Beisel KW, Jones K, Fariñas I, Maklad A, Lee J, Reichardt LF.

J Neurobiol. 2002 Nov 5;53(2):143-56. Review.

47.

Cochlear whole mount in situ hybridization: identification of longitudinal and radial gradients.

Judice TN, Nelson NC, Beisel CL, Delimont DC, Fritzsch B, Beisel KW.

Brain Res Brain Res Protoc. 2002 Feb;9(1):65-76.

PMID:
11852272
48.

Expression of subunits for the cAMP-sensitive 'olfactory' cyclic nucleotide-gated ion channel in the cochlea: implications for signal transduction.

Drescher MJ, Barretto RL, Chaturvedi D, Beisel KW, Hatfield JS, Khan KM, Drescher DG.

Brain Res Mol Brain Res. 2002 Jan 31;98(1-2):1-14.

PMID:
11834291
49.

Evolution and development of the vertebrate ear.

Fritzsch B, Beisel KW.

Brain Res Bull. 2001 Aug;55(6):711-21. Review.

PMID:
11595355
50.

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