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Genome-wide association study of an unusual dolphin mortality event reveals candidate genes for susceptibility and resistance to cetacean morbillivirus.

Batley KC, Sandoval-Castillo J, Kemper CM, Attard CRM, Zanardo N, Tomo I, Beheregaray LB, Möller LM.

Evol Appl. 2018 Dec 26;12(4):718-732. doi: 10.1111/eva.12747. eCollection 2019 Apr.


Thermal selection as a driver of marine ecological speciation.

Teske PR, Sandoval-Castillo J, Golla TR, Emami-Khoyi A, Tine M, von der Heyden S, Beheregaray LB.

Proc Biol Sci. 2019 Feb 13;286(1896):20182023. doi: 10.1098/rspb.2018.2023.


Aquatic Landscape Genomics and Environmental Effects on Genetic Variation.

Grummer JA, Beheregaray LB, Bernatchez L, Hand BK, Luikart G, Narum SR, Taylor EB.

Trends Ecol Evol. 2019 Jul;34(7):641-654. doi: 10.1016/j.tree.2019.02.013. Epub 2019 Mar 20. Review.


Genetically informed captive breeding of hybrids of an extinct species of Galapagos tortoise.

Quinzin MC, Sandoval-Castillo J, Miller JM, Beheregaray LB, Russello MA, Hunter EA, Gibbs JP, Tapia W, Villalva F, Caccone A.

Conserv Biol. 2019 Mar 22. doi: 10.1111/cobi.13319. [Epub ahead of print]


Giant tortoise genomes provide insights into longevity and age-related disease.

Quesada V, Freitas-Rodríguez S, Miller J, Pérez-Silva JG, Jiang ZF, Tapia W, Santiago-Fernández O, Campos-Iglesias D, Kuderna LFK, Quinzin M, Álvarez MG, Carrero D, Beheregaray LB, Gibbs JP, Chiari Y, Glaberman S, Ciofi C, Araujo-Voces M, Mayoral P, Arango JR, Tamargo-Gómez I, Roiz-Valle D, Pascual-Torner M, Evans BR, Edwards DL, Garrick RC, Russello MA, Poulakakis N, Gaughran SJ, Rueda DO, Bretones G, Marquès-Bonet T, White KP, Caccone A, López-Otín C.

Nat Ecol Evol. 2019 Jan;3(1):87-95. doi: 10.1038/s41559-018-0733-x. Epub 2018 Dec 3.


Phylogenomic history of enigmatic pygmy perches: implications for biogeography, taxonomy and conservation.

Buckley SJ, Domingos FMCB, Attard CRM, Brauer CJ, Sandoval-Castillo J, Lodge R, Unmack PJ, Beheregaray LB.

R Soc Open Sci. 2018 Jun 13;5(6):172125. doi: 10.1098/rsos.172125. eCollection 2018 Jun.


On the roles of landscape heterogeneity and environmental variation in determining population genomic structure in a dendritic system.

Brauer CJ, Unmack PJ, Smith S, Bernatchez L, Beheregaray LB.

Mol Ecol. 2018 Sep;27(17):3484-3497. doi: 10.1111/mec.14808. Epub 2018 Aug 3.


Theory, practice, and conservation in the age of genomics: The Galápagos giant tortoise as a case study.

Gaughran SJ, Quinzin MC, Miller JM, Garrick RC, Edwards DL, Russello MA, Poulakakis N, Ciofi C, Beheregaray LB, Caccone A.

Evol Appl. 2017 Oct 23;11(7):1084-1093. doi: 10.1111/eva.12551. eCollection 2018 Aug.


Mitochondrial DNA is unsuitable to test for isolation by distance.

Teske PR, Golla TR, Sandoval-Castillo J, Emami-Khoyi A, van der Lingen CD, von der Heyden S, Chiazzari B, Jansen van Vuuren B, Beheregaray LB.

Sci Rep. 2018 May 31;8(1):8448. doi: 10.1038/s41598-018-25138-9.


Isolation by environment in the highly mobile olive ridley turtle (Lepidochelys olivacea) in the eastern Pacific.

Rodríguez-Zárate CJ, Sandoval-Castillo J, van Sebille E, Keane RG, Rocha-Olivares A, Urteaga J, Beheregaray LB.

Proc Biol Sci. 2018 May 16;285(1878). pii: 20180264. doi: 10.1098/rspb.2018.0264.


Author Correction: Identification of Genetically Important Individuals of the Rediscovered Floreana Galápagos Giant Tortoise (Chelonoidis elephantopus) Provides Founders for Species Restoration Program.

Miller JM, Quinzin MC, Poulakakis N, Gibbs JP, Beheregaray LB, Garrick RC, Russello MA, Ciofi C, Edwards DL, Hunter EA, Tapia W, Rueda D, Carrión J, Valdivieso AA, Caccone A.

Sci Rep. 2018 Mar 12;8(1):4568. doi: 10.1038/s41598-018-22519-y.


Seascape genomics reveals adaptive divergence in a connected and commercially important mollusc, the greenlip abalone (Haliotis laevigata), along a longitudinal environmental gradient.

Sandoval-Castillo J, Robinson NA, Hart AM, Strain LWS, Beheregaray LB.

Mol Ecol. 2018 Apr;27(7):1603-1620. doi: 10.1111/mec.14526. Epub 2018 Mar 14.


From conservation genetics to conservation genomics: a genome-wide assessment of blue whales (Balaenoptera musculus) in Australian feeding aggregations.

Attard CRM, Beheregaray LB, Sandoval-Castillo J, Jenner KCS, Gill PC, Jenner MM, Morrice MG, Möller LM.

R Soc Open Sci. 2018 Jan 31;5(1):170925. doi: 10.1098/rsos.170925. eCollection 2018 Jan.


Artificial barriers prevent genetic recovery of small isolated populations of a low-mobility freshwater fish.

Coleman RA, Gauffre B, Pavlova A, Beheregaray LB, Kearns J, Lyon J, Sasaki M, Leblois R, Sgro C, Sunnucks P.

Heredity (Edinb). 2018 Jun;120(6):515-532. doi: 10.1038/s41437-017-0008-3. Epub 2018 Jan 12.


Genetic divergence between two phenotypically distinct bottlenose dolphin ecotypes suggests separate evolutionary trajectories.

Fruet PF, Secchi ER, Di Tullio JC, Simões-Lopes PC, Daura-Jorge F, Costa APB, Vermeulen E, Flores PAC, Genoves RC, Laporta P, Beheregaray LB, Möller LM.

Ecol Evol. 2017 Sep 29;7(21):9131-9143. doi: 10.1002/ece3.3335. eCollection 2017 Nov.


Ecological disturbance influences adaptive divergence despite high gene flow in golden perch (Macquaria ambigua): Implications for management and resilience to climate change.

Attard CRM, Brauer CJ, Sandoval-Castillo J, Faulks LK, Unmack PJ, Gilligan DM, Beheregaray LB.

Mol Ecol. 2018 Jan;27(1):196-215. doi: 10.1111/mec.14438. Epub 2017 Dec 21.


Genotyping-by-sequencing for estimating relatedness in nonmodel organisms: Avoiding the trap of precise bias.

Attard CRM, Beheregaray LB, Möller LM.

Mol Ecol Resour. 2018 May;18(3):381-390. doi: 10.1111/1755-0998.12739. Epub 2018 Jan 29.


Comparative ecological transcriptomics and the contribution of gene expression to the evolutionary potential of a threatened fish.

Brauer CJ, Unmack PJ, Beheregaray LB.

Mol Ecol. 2017 Dec;26(24):6841-6856. doi: 10.1111/mec.14432. Epub 2017 Dec 2.


Identification of Genetically Important Individuals of the Rediscovered Floreana Galápagos Giant Tortoise (Chelonoidis elephantopus) Provide Founders for Species Restoration Program.

Miller JM, Quinzin MC, Poulakakis N, Gibbs JP, Beheregaray LB, Garrick RC, Russello MA, Ciofi C, Edwards DL, Hunter EA, Tapia W, Rueda D, Carrión J, Valdivieso AA, Caccone A.

Sci Rep. 2017 Sep 13;7(1):11471. doi: 10.1038/s41598-017-11516-2. Erratum in: Sci Rep. 2018 Mar 12;8(1):4568.


Severe consequences of habitat fragmentation on genetic diversity of an endangered Australian freshwater fish: A call for assisted gene flow.

Pavlova A, Beheregaray LB, Coleman R, Gilligan D, Harrisson KA, Ingram BA, Kearns J, Lamb AM, Lintermans M, Lyon J, Nguyen TTT, Sasaki M, Tonkin Z, Yen JDL, Sunnucks P.

Evol Appl. 2017 May 11;10(6):531-550. doi: 10.1111/eva.12484. eCollection 2017 Jul.


De novo transcriptome assembly and annotation for the desert rainbowfish (Melanotaenia splendida tatei) with comparison with candidate genes for future climates.

Gates K, Sandoval-Castillo J, Bernatchez L, Beheregaray LB.

Mar Genomics. 2017 Oct;35:63-68. doi: 10.1016/j.margen.2017.05.008. Epub 2017 May 22.


Genome-wide data delimits multiple climate-determined species ranges in a widespread Australian fish, the golden perch (Macquaria ambigua).

Beheregaray LB, Pfeiffer LV, Attard CRM, Sandoval-Castillo J, Domingos FMCB, Faulks LK, Gilligan DM, Unmack PJ.

Mol Phylogenet Evol. 2017 Jun;111:65-75. doi: 10.1016/j.ympev.2017.03.021. Epub 2017 Mar 24.


Genome-wide SNPs resolve a key conflict between sequence and allozyme data to confirm another threatened candidate species of river blackfishes (Teleostei: Percichthyidae: Gadopsis).

Unmack PJ, Sandoval-Castillo J, Hammer MP, Adams M, Raadik TA, Beheregaray LB.

Mol Phylogenet Evol. 2017 Apr;109:415-420. doi: 10.1016/j.ympev.2017.02.013. Epub 2017 Feb 22.


In the shadows: Phylogenomics and coalescent species delimitation unveil cryptic diversity in a Cerrado endemic lizard (Squamata: Tropidurus).

Domingos FMCB, Colli GR, Lemmon A, Lemmon EM, Beheregaray LB.

Mol Phylogenet Evol. 2017 Feb;107:455-465. doi: 10.1016/j.ympev.2016.12.009. Epub 2016 Dec 9.


Landscape genetics informs mesohabitat preference and conservation priorities for a surrogate indicator species in a highly fragmented river system.

Lean J, Hammer MP, Unmack PJ, Adams M, Beheregaray LB.

Heredity (Edinb). 2017 Apr;118(4):374-384. doi: 10.1038/hdy.2016.111. Epub 2016 Nov 23.


swinger: a user-friendly computer program to establish captive breeding groups that minimize relatedness without pedigree information.

Sandoval-Castillo J, Attard CR, Marri S, Brauer CJ, Möller LM, Beheregaray LB.

Mol Ecol Resour. 2017 Mar;17(2):278-287. doi: 10.1111/1755-0998.12609. Epub 2016 Nov 14.


Oceanography promotes self-recruitment in a planktonic larval disperser.

Teske PR, Sandoval-Castillo J, van Sebille E, Waters J, Beheregaray LB.

Sci Rep. 2016 Sep 30;6:34205. doi: 10.1038/srep34205.


Riverscape genomics of a threatened fish across a hydroclimatically heterogeneous river basin.

Brauer CJ, Hammer MP, Beheregaray LB.

Mol Ecol. 2016 Oct;25(20):5093-5113. doi: 10.1111/mec.13830. Epub 2016 Sep 17.


The adaptive potential of subtropical rainbowfish in the face of climate change: heritability and heritable plasticity for the expression of candidate genes.

McCairns RJ, Smith S, Sasaki M, Bernatchez L, Beheregaray LB.

Evol Appl. 2016 Feb 18;9(4):531-45. doi: 10.1111/eva.12363. eCollection 2016 Apr.


A novel holistic framework for genetic-based captive-breeding and reintroduction programs.

Attard CR, Möller LM, Sasaki M, Hammer MP, Bice CM, Brauer CJ, Carvalho DC, Harris JO, Beheregaray LB.

Conserv Biol. 2016 Oct;30(5):1060-9. doi: 10.1111/cobi.12699. Epub 2016 May 9.


Characterization of MHC class IIB for four endangered Australian freshwater fishes obtained from ecologically divergent populations.

Bracamonte SE, Smith S, Hammer M, Pavey SA, Sunnucks P, Beheregaray LB.

Fish Shellfish Immunol. 2015 Oct;46(2):468-76. doi: 10.1016/j.fsi.2015.06.009. Epub 2015 Jun 18.


Low genetic diversity in pygmy blue whales is due to climate-induced diversification rather than anthropogenic impacts.

Attard CR, Beheregaray LB, Jenner KC, Gill PC, Jenner MN, Morrice MG, Teske PR, Möller LM.

Biol Lett. 2015 May;11(5):20141037. doi: 10.1098/rsbl.2014.1037.


Ecological speciation in the tropics: insights from comparative genetic studies in Amazonia.

Beheregaray LB, Cooke GM, Chao NL, Landguth EL.

Front Genet. 2015 Jan 21;5:477. doi: 10.3389/fgene.2014.00477. eCollection 2014. Review.


Can novel genetic analyses help to identify low-dispersal marine invasive species?

Teske PR, Sandoval-Castillo J, Waters JM, Beheregaray LB.

Ecol Evol. 2014 Jul;4(14):2848-66. doi: 10.1002/ece3.1129. Epub 2014 Jun 24.


Out of the deep: cryptic speciation in a Neotropical gecko (Squamata, Phyllodactylidae) revealed by species delimitation methods.

Domingos FM, Bosque RJ, Cassimiro J, Colli GR, Rodrigues MT, Santos MG, Beheregaray LB.

Mol Phylogenet Evol. 2014 Nov;80:113-24. doi: 10.1016/j.ympev.2014.07.022. Epub 2014 Aug 8.


The complete mitochondrial genome of the southern purple-spotted gudgeon Mogurnda adspersa (Perciformes: Eleotridae) through pyrosequencing.

Perini Vda R, de Carvalho DC, Beheregaray LB, Prosdocimi F.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(1):380-2. doi: 10.3109/19401736.2014.895995. Epub 2014 Mar 24.


Riverscape genetics identifies replicated ecological divergence across an Amazonian ecotone.

Cooke GM, Landguth EL, Beheregaray LB.

Evolution. 2014 Jul;68(7):1947-60. doi: 10.1111/evo.12410. Epub 2014 May 5.


Catchment-scale conservation units identified for the threatened Yarra pygmy perch (Nannoperca obscura) in highly modified river systems.

Brauer CJ, Unmack PJ, Hammer MP, Adams M, Beheregaray LB.

PLoS One. 2013 Dec 13;8(12):e82953. doi: 10.1371/journal.pone.0082953. eCollection 2013.


RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species.

Smith S, Bernatchez L, Beheregaray LB.

BMC Genomics. 2013 Jun 5;14:375. doi: 10.1186/1471-2164-14-375.


Permanent genetic resources added to Molecular Ecology Resources Database 1 February 2013-31 March 2013.

Molecular Ecology Resources Primer Development Consortium, Arias MC, Atteke C, Augusto SC, Bailey J, Bazaga P, Beheregaray LB, Benoit L, Blatrix R, Born C, Brito RM, Chen HK, Covarrubias S, de Vega C, Djiéto-Lordon C, Dubois MP, Francisco FO, García C, Gonçalves PH, González C, Gutiérrez-Rodríguez C, Hammer MP, Herrera CM, Itoh H, Kamimura S, Karaoglu H, Kojima S, Li SL, Ling HJ, Matos-Maraví PF, McKey D, Mezui-M'Eko J, Ornelas JF, Park RF, Pozo MI, Ramula S, Rigueiro C, Sandoval-Castillo J, Santiago LR, Seino MM, Song CB, Takeshima H, Vasemägi A, Wellings CR, Yan J, Yu-Zhou D, Zhang CR, Zhang TY.

Mol Ecol Resour. 2013 Jul;13(4):760-2. doi: 10.1111/1755-0998.12121. Epub 2013 May 20.


Permanent genetic resources added to molecular ecology resources database 1 October 2012-30 November 2012.

Molecular Ecology Resources Primer Development Consortium, Aksoy S, Almeida-Val VM, Azevedo VC, Baucom R, Bazaga P, Beheregaray LB, Bennetzen JL, Brassaloti RA, Burgess TI, Caccone A, Chang SM, Ciampi AY, Ciancaleoni S, Clímaco GT, Clouet C, Coimbra MR, Coutinho LL, Dantas HL, De Vega C, Echodu R, Enyaru J, Figueira A, Filho MA, Foltz B, Fressigné L, Gadomski M, Gauthier N, Herrera CM, Hyseni C, Jorge EC, Kaczmarczyk D, Knott E, Kuester A, Lima AP, Lima MA, Lima MP, Longo AL, Lor G, Maggioni R, Marques TS, Martins AR, Matoso DA, Medrano M, Mendonça MA, Mettler R, Nascimento PR, Negri V, Oliveira KK, Oliveira LO, Ovcarenko I, Paula-Silva MN, Raggi L, Sandoval-Castillo J, Santos CH, Martin Schaefer H, Segelbacher G, Seino MM, Sistrom M, Taole MM, Teske PR, Tsagkarakou A, Verdade LM, Villela PM, Vinson CC, Wingfield BD, Wingfield MJ.

Mol Ecol Resour. 2013 Mar;13(2):341-3. doi: 10.1111/1755-0998.12061. Epub 2013 Jan 25.


Five cryptic species in the amazonian catfish Centromochlus existimatus identified based on biogeographic predictions and genetic data.

Cooke GM, Chao NL, Beheregaray LB.

PLoS One. 2012;7(11):e48800. doi: 10.1371/journal.pone.0048800. Epub 2012 Nov 7.


Hybridization of Southern Hemisphere blue whale subspecies and a sympatric area off Antarctica: impacts of whaling or climate change?

Attard CR, Beheregaray LB, Jenner KC, Gill PC, Jenner MN, Morrice MG, Robertson KM, Möller LM.

Mol Ecol. 2012 Dec;21(23):5715-27. doi: 10.1111/mec.12025. Epub 2012 Nov 8.


Isolation and characterization of microsatellite markers for Passiflora contracta.

Cazé AL, Kriedt RA, Beheregaray LB, Bonatto SL, Freitas LB.

Int J Mol Sci. 2012;13(9):11343-8. doi: 10.3390/ijms130911343. Epub 2012 Sep 12.


Influences of past climatic changes on historical population structure and demography of a cosmopolitan marine predator, the common dolphin (genus Delphinus).

Amaral AR, Beheregaray LB, Bilgmann K, Freitas L, Robertson KM, Sequeira M, Stockin KA, Coelho MM, Möller LM.

Mol Ecol. 2012 Oct;21(19):4854-71. doi: 10.1111/j.1365-294X.2012.05728.x. Epub 2012 Aug 14.


Natural selection in the water: freshwater invasion and adaptation by water colour in the Amazonian pufferfish.

Cooke GM, Chao NL, Beheregaray LB.

J Evol Biol. 2012 Jul;25(7):1305-20. doi: 10.1111/j.1420-9101.2012.02514.x. Epub 2012 May 3.


Species tree of a recent radiation: the subfamily Delphininae (Cetacea, Mammalia).

Amaral AR, Jackson JA, Möller LM, Beheregaray LB, Manuela Coelho M.

Mol Phylogenet Evol. 2012 Jul;64(1):243-53. doi: 10.1016/j.ympev.2012.04.004. Epub 2012 Apr 11.


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