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Items: 1 to 50 of 71

1.

Genomics of parallel adaptation at two timescales in Drosophila.

Zhao L, Begun DJ.

PLoS Genet. 2017 Oct 2;13(10):e1007016. doi: 10.1371/journal.pgen.1007016. eCollection 2017 Oct.

2.

The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster.

Svetec N, Cridland JM, Zhao L, Begun DJ.

PLoS Genet. 2016 Mar 7;12(3):e1005869. doi: 10.1371/journal.pgen.1005869. eCollection 2016 Mar.

3.

Parallel Evolution of Copy-Number Variation across Continents in Drosophila melanogaster.

Schrider DR, Hahn MW, Begun DJ.

Mol Biol Evol. 2016 May;33(5):1308-16. doi: 10.1093/molbev/msw014. Epub 2016 Jan 25.

4.

Genomic Patterns of Geographic Differentiation in Drosophila simulans.

Sedghifar A, Saelao P, Begun DJ.

Genetics. 2016 Mar;202(3):1229-40. doi: 10.1534/genetics.115.185496. Epub 2016 Jan 22.

5.

Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans.

Zhao L, Wit J, Svetec N, Begun DJ.

PLoS Genet. 2015 May 7;11(5):e1005184. doi: 10.1371/journal.pgen.1005184. eCollection 2015 May.

6.

Evidence that natural selection maintains genetic variation for sleep in Drosophila melanogaster.

Svetec N, Zhao L, Saelao P, Chiu JC, Begun DJ.

BMC Evol Biol. 2015 Mar 13;15:41. doi: 10.1186/s12862-015-0316-2.

7.

Wolbachia do not live by reproductive manipulation alone: infection polymorphism in Drosophila suzukii and D. subpulchrella.

Hamm CA, Begun DJ, Vo A, Smith CC, Saelao P, Shaver AO, Jaenike J, Turelli M.

Mol Ecol. 2014 Oct;23(19):4871-85. doi: 10.1111/mec.12901. Epub 2014 Sep 18.

8.

Parallel geographic variation in Drosophila melanogaster.

Reinhardt JA, Kolaczkowski B, Jones CD, Begun DJ, Kern AD.

Genetics. 2014 May;197(1):361-73. doi: 10.1534/genetics.114.161463. Epub 2014 Mar 7.

9.

Origin and spread of de novo genes in Drosophila melanogaster populations.

Zhao L, Saelao P, Jones CD, Begun DJ.

Science. 2014 Feb 14;343(6172):769-72. doi: 10.1126/science.1248286. Epub 2014 Jan 23.

10.

Differential strengths of positive selection revealed by hitchhiking effects at small physical scales in Drosophila melanogaster.

Lee YC, Langley CH, Begun DJ.

Mol Biol Evol. 2014 Apr;31(4):804-16. doi: 10.1093/molbev/mst270. Epub 2013 Dec 20.

11.

De novo ORFs in Drosophila are important to organismal fitness and evolved rapidly from previously non-coding sequences.

Reinhardt JA, Wanjiru BM, Brant AT, Saelao P, Begun DJ, Jones CD.

PLoS Genet. 2013;9(10):e1003860. doi: 10.1371/journal.pgen.1003860. Epub 2013 Oct 17.

12.

Genome of Drosophila suzukii, the spotted wing drosophila.

Chiu JC, Jiang X, Zhao L, Hamm CA, Cridland JM, Saelao P, Hamby KA, Lee EK, Kwok RS, Zhang G, Zalom FG, Walton VM, Begun DJ.

G3 (Bethesda). 2013 Dec 9;3(12):2257-71. doi: 10.1534/g3.113.008185.

13.
14.

Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture.

Pool JE, Corbett-Detig RB, Sugino RP, Stevens KA, Cardeno CM, Crepeau MW, Duchen P, Emerson JJ, Saelao P, Begun DJ, Langley CH.

PLoS Genet. 2012;8(12):e1003080. doi: 10.1371/journal.pgen.1003080. Epub 2012 Dec 20.

15.

Population genomic analysis of base composition evolution in Drosophila melanogaster.

Poh YP, Ting CT, Fu HW, Langley CH, Begun DJ.

Genome Biol Evol. 2012;4(12):1245-55. doi: 10.1093/gbe/evs097.

16.

Genomic variation in natural populations of Drosophila melanogaster.

Langley CH, Stevens K, Cardeno C, Lee YC, Schrider DR, Pool JE, Langley SA, Suarez C, Corbett-Detig RB, Kolaczkowski B, Fang S, Nista PM, Holloway AK, Kern AD, Dewey CN, Song YS, Hahn MW, Begun DJ.

Genetics. 2012 Oct;192(2):533-98. doi: 10.1534/genetics.112.142018. Epub 2012 Jun 5.

17.

Genomic differentiation between temperate and tropical Australian populations of Drosophila melanogaster.

Kolaczkowski B, Kern AD, Holloway AK, Begun DJ.

Genetics. 2011 Jan;187(1):245-60. doi: 10.1534/genetics.110.123059. Epub 2010 Nov 8.

18.

Whole-genome expression plasticity across tropical and temperate Drosophila melanogaster populations from Eastern Australia.

Levine MT, Eckert ML, Begun DJ.

Mol Biol Evol. 2011 Jan;28(1):249-56. doi: 10.1093/molbev/msq197. Epub 2010 Jul 29.

19.

Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans.

Lawniczak MK, Holloway AK, Begun DJ, Jones CD.

Genome Biol. 2008;9(8):R125. doi: 10.1186/gb-2008-9-8-r125. Epub 2008 Aug 12.

20.

Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster.

Holloway AK, Begun DJ, Siepel A, Pollard KS.

Genome Res. 2008 Oct;18(10):1592-601. doi: 10.1101/gr.077131.108. Epub 2008 Jun 26.

21.
22.

Genomic analysis of adaptive differentiation in Drosophila melanogaster.

Turner TL, Levine MT, Eckert ML, Begun DJ.

Genetics. 2008 May;179(1):455-73. doi: 10.1534/genetics.107.083659.

23.

Evidence of spatially varying selection acting on four chromatin-remodeling loci in Drosophila melanogaster.

Levine MT, Begun DJ.

Genetics. 2008 May;179(1):475-85. doi: 10.1534/genetics.107.085423. Epub 2008 Feb 3.

24.
25.

Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans.

Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh YP, Hahn MW, Nista PM, Jones CD, Kern AD, Dewey CN, Pachter L, Myers E, Langley CH.

PLoS Biol. 2007 Nov 6;5(11):e310.

26.
27.

Adaptive gene expression divergence inferred from population genomics.

Holloway AK, Lawniczak MK, Mezey JG, Begun DJ, Jones CD.

PLoS Genet. 2007 Oct;3(10):2007-13.

28.

Adaptive evolution of recently duplicated accessory gland protein genes in desert Drosophila.

Wagstaff BJ, Begun DJ.

Genetics. 2007 Oct;177(2):1023-30. Epub 2007 Aug 24.

29.

Molecular population genetics of female-expressed mating-induced serine proteases in Drosophila melanogaster.

Lawniczak MK, Begun DJ.

Mol Biol Evol. 2007 Sep;24(9):1944-51. Epub 2007 Jun 14.

PMID:
17573377
30.
31.

Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade.

Begun DJ, Lindfors HA, Kern AD, Jones CD.

Genetics. 2007 Jun;176(2):1131-7. Epub 2007 Apr 15.

32.

Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression.

Levine MT, Jones CD, Kern AD, Lindfors HA, Begun DJ.

Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9935-9. Epub 2006 Jun 15.

33.

Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags.

Begun DJ, Lindfors HA, Thompson ME, Holloway AK.

Genetics. 2006 Mar;172(3):1675-81. Epub 2005 Dec 15.

35.
36.

Parallel evolution of chimeric fusion genes.

Jones CD, Begun DJ.

Proc Natl Acad Sci U S A. 2005 Aug 9;102(32):11373-8. Epub 2005 Aug 2.

37.

Rapid evolution of genomic Acp complement in the melanogaster subgroup of Drosophila.

Begun DJ, Lindfors HA.

Mol Biol Evol. 2005 Oct;22(10):2010-21. Epub 2005 Jun 29.

PMID:
15987879
38.

Origin and evolution of a chimeric fusion gene in Drosophila subobscura, D. madeirensis and D. guanche.

Jones CD, Custer AW, Begun DJ.

Genetics. 2005 May;170(1):207-19. Epub 2005 Mar 21.

39.

Evolutionary genomics: codon bias and selection on single genomes.

Hahn MW, Mezey JG, Begun DJ, Gillespie JH, Kern AD, Langley CH, Moyle LC.

Nature. 2005 Jan 20;433(7023):E5-6; discussion E7-8.

PMID:
15662370
40.

Linkage disequilibrium and recent selection at three immunity receptor loci in Drosophila simulans.

Schlenke TA, Begun DJ.

Genetics. 2005 Apr;169(4):2013-22. Epub 2005 Jan 16.

41.

Comparative genomics of accessory gland protein genes in Drosophila melanogaster and D. pseudoobscura.

Wagstaff BJ, Begun DJ.

Mol Biol Evol. 2005 Apr;22(4):818-32. Epub 2004 Dec 15.

PMID:
15601888
42.
43.
44.
45.

Molecular evolution and population genetics of duplicated accessory gland protein genes in Drosophila.

Holloway AK, Begun DJ.

Mol Biol Evol. 2004 Sep;21(9):1625-8. Epub 2004 Jun 23.

PMID:
15215320
46.

Strong selective sweep associated with a transposon insertion in Drosophila simulans.

Schlenke TA, Begun DJ.

Proc Natl Acad Sci U S A. 2004 Feb 10;101(6):1626-31. Epub 2004 Jan 26.

47.

Natural selection drives Drosophila immune system evolution.

Schlenke TA, Begun DJ.

Genetics. 2003 Aug;164(4):1471-80.

48.

Genomic effects of nucleotide substitutions in Drosophila simulans.

Kern AD, Jones CD, Begun DJ.

Genetics. 2002 Dec;162(4):1753-61.

49.
50.

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