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Items: 35

1.

Fractional coalescent.

Mashayekhi S, Beerli P.

Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):6244-6249. doi: 10.1073/pnas.1810239116. Epub 2019 Mar 13.

2.

A synthesis of genetic connectivity in deep-sea fauna and implications for marine reserve design.

Baco AR, Etter RJ, Ribeiro PA, von der Heyden S, Beerli P, Kinlan BP.

Mol Ecol. 2016 Jul;25(14):3276-98. doi: 10.1111/mec.13689. Epub 2016 Jun 30. Review.

PMID:
27146215
3.

Strong and stable geographic differentiation of swamp buffalo maternal and paternal lineages indicates domestication in the China/Indochina border region.

Zhang Y, Lu Y, Yindee M, Li KY, Kuo HY, Ju YT, Ye S, Faruque MO, Li Q, Wang Y, Cuong VC, Pham LD, Bouahom B, Yang B, Liang X, Cai Z, Vankan D, Manatchaiworakul W, Kowlim N, Duangchantrasiri S, Wajjwalku W, Colenbrander B, Zhang Y, Beerli P, Lenstra JA, Barker JS.

Mol Ecol. 2016 Apr;25(7):1530-50. doi: 10.1111/mec.13518. Epub 2016 Mar 17.

PMID:
26677084
4.

Assortative mating drives linkage disequilibrium between sperm and egg recognition protein loci in the sea urchin Strongylocentrotus purpuratus.

Stapper AP, Beerli P, Levitan DR.

Mol Biol Evol. 2015 Apr;32(4):859-70. doi: 10.1093/molbev/msv010. Epub 2015 Jan 23.

PMID:
25618458
5.

Global diversity and oceanic divergence of humpback whales (Megaptera novaeangliae).

Jackson JA, Steel DJ, Beerli P, Congdon BC, Olavarría C, Leslie MS, Pomilla C, Rosenbaum H, Baker CS.

Proc Biol Sci. 2014 Jul 7;281(1786). pii: 20133222. doi: 10.1098/rspb.2013.3222.

6.

A continuous method for gene flow.

Palczewski M, Beerli P.

Genetics. 2013 Jul;194(3):687-96. doi: 10.1534/genetics.113.150904. Epub 2013 May 11.

7.

Biogeographic models of gene flow in two waterfowl of the Australo-Papuan tropics.

Roshier DA, Heinsohn R, Adcock GJ, Beerli P, Joseph L.

Ecol Evol. 2012 Nov;2(11):2803-14. doi: 10.1002/ece3.393. Epub 2012 Oct 9.

8.

Balancing a cline by influx of migrants: a genetic transition in water frogs of eastern Greece.

Hotz H, Beerli P, Uzzell T, Guex GD, Pruvost NB, Schreiber R, Plötner J.

J Hered. 2013 Jan-Feb;104(1):57-71. doi: 10.1093/jhered/ess086. Epub 2012 Nov 1.

9.

A possible explanation for the population size discrepancy in tuna (genus Thunnus) estimated from mitochondrial DNA and microsatellite data.

Qiu F, Kitchen A, Beerli P, Miyamoto MM.

Mol Phylogenet Evol. 2013 Feb;66(2):463-8. doi: 10.1016/j.ympev.2012.05.002. Epub 2012 May 9.

PMID:
22579759
10.

Gene flow and population structure in the Mexican blind cavefish complex (Astyanax mexicanus).

Bradic M, Beerli P, García-de León FJ, Esquivel-Bobadilla S, Borowsky RL.

BMC Evol Biol. 2012 Jan 23;12:9. doi: 10.1186/1471-2148-12-9.

11.

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics.

Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP, Rambaut A, Suchard MA.

Syst Biol. 2012 Jan;61(1):170-3. doi: 10.1093/sysbio/syr100. Epub 2011 Oct 1.

12.

Genetic variation of Anastrepha suspensa (Diptera: Tephritidae) in Florida and the Caribbean using microsatellite DNA markers.

Boykin LM, Shatters RG Jr, Hall DG, Dean D, Beerli P.

J Econ Entomol. 2010 Dec;103(6):2214-22.

PMID:
21309246
13.

Phylogeographic patterns of genetic diversity in eastern Mediterranean water frogs have been determined by geological processes and climate change in the Late Cenozoic.

Akın C, Bilgin CC, Beerli P, Westaway R, Ohst T, Litvinchuk SN, Uzzell T, Bilgin M, Hotz H, Guex GD, Plötner J.

J Biogeogr. 2010 Nov;37(11):2111-2124.

14.

Global migration dynamics underlie evolution and persistence of human influenza A (H3N2).

Bedford T, Cobey S, Beerli P, Pascual M.

PLoS Pathog. 2010 May 27;6(5):e1000918. doi: 10.1371/journal.ppat.1000918.

15.

Unified framework to evaluate panmixia and migration direction among multiple sampling locations.

Beerli P, Palczewski M.

Genetics. 2010 May;185(1):313-26. doi: 10.1534/genetics.109.112532. Epub 2010 Feb 22.

16.

In defence of model-based inference in phylogeography.

Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, Cornuet JM, Huelsenbeck J, Foll M, Yang Z, Rousset F, Balding D, Excoffier L.

Mol Ecol. 2010 Feb;19(3):436-446. doi: 10.1111/j.1365-294X.2009.04515.x. Epub 2010 Jan 11.

17.

Evolution of serum albumin intron-1 is shaped by a 5' truncated non-long terminal repeat retrotransposon in western Palearctic water frogs (Neobatrachia).

Plötner J, Köhler F, Uzzell T, Beerli P, Schreiber R, Guex GD, Hotz H.

Mol Phylogenet Evol. 2009 Dec;53(3):784-91. doi: 10.1016/j.ympev.2009.07.037. Epub 2009 Aug 6.

18.

Genetic structuring and migration patterns of Atlantic bigeye tuna, Thunnus obesus (Lowe, 1839).

Gonzalez EG, Beerli P, Zardoya R.

BMC Evol Biol. 2008 Sep 17;8:252. doi: 10.1186/1471-2148-8-252.

19.

The strength of phenotypic selection in natural populations.

Kingsolver JG, Hoekstra HE, Hoekstra JM, Berrigan D, Vignieri SN, Hill CE, Hoang A, Gibert P, Beerli P.

Am Nat. 2001 Mar;157(3):245-61. doi: 10.1086/319193.

PMID:
18707288
20.

Widespread unidirectional transfer of mitochondrial DNA: a case in western Palaearctic water frogs.

Plötner J, Uzzell T, Beerli P, Spolsky C, Ohst T, Litvinchuk SN, Guex GD, Reyer HU, Hotz H.

J Evol Biol. 2008 May;21(3):668-81. doi: 10.1111/j.1420-9101.2008.01527.x. Epub 2008 Mar 27.

21.

Multigene analysis suggests ecological speciation in the fungal pathogen Claviceps purpurea.

Douhan GW, Smith ME, Huyrn KL, Westbrook A, Beerli P, Fisher AJ.

Mol Ecol. 2008 May;17(9):2276-86. doi: 10.1111/j.1365-294X.2008.03753.x. Epub 2008 Mar 25.

22.

Estimation of the population scaled mutation rate from microsatellite data.

Beerli P.

Genetics. 2007 Nov;177(3):1967-8. Epub 2007 Oct 18. No abstract available.

23.

Comparison of Bayesian and maximum-likelihood inference of population genetic parameters.

Beerli P.

Bioinformatics. 2006 Feb 1;22(3):341-5. Epub 2005 Nov 29.

PMID:
16317072
24.

Host switch leads to emergence of Plasmodium vivax malaria in humans.

Mu J, Joy DA, Duan J, Huang Y, Carlton J, Walker J, Barnwell J, Beerli P, Charleston MA, Pybus OG, Su XZ.

Mol Biol Evol. 2005 Aug;22(8):1686-93. Epub 2005 Apr 27.

PMID:
15858201
26.

Early origin and recent expansion of Plasmodium falciparum.

Joy DA, Feng X, Mu J, Furuya T, Chotivanich K, Krettli AU, Ho M, Wang A, White NJ, Suh E, Beerli P, Su XZ.

Science. 2003 Apr 11;300(5617):318-21.

27.

Strength and tempo of directional selection in the wild.

Hoekstra HE, Hoekstra JM, Berrigan D, Vignieri SN, Hoang A, Hill CE, Beerli P, Kingsolver JG.

Proc Natl Acad Sci U S A. 2001 Jul 31;98(16):9157-60. Epub 2001 Jul 24. Review.

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30.

Usefulness of single nucleotide polymorphism data for estimating population parameters.

Kuhner MK, Beerli P, Yamato J, Felsenstein J.

Genetics. 2000 Sep;156(1):439-47.

32.

Spontaneous heterosis in larval life-history traits of hemiclonal frog hybrids.

Hotz H, Semlitsch RD, Gutmann E, Guex GD, Beerli P.

Proc Natl Acad Sci U S A. 1999 Mar 2;96(5):2171-6.

33.

Statistical analyses of population genetic data.

Beerli P.

Trends Ecol Evol. 1997 Dec;12(12):488. No abstract available.

PMID:
21238166
34.

GEOLOGICALLY DATED SEA BARRIERS CALIBRATE A PROTEIN CLOCK FOR AEGEAN WATER FROGS.

Beerli P, Hotz H, Uzzell T.

Evolution. 1996 Aug;50(4):1676-1687. doi: 10.1111/j.1558-5646.1996.tb03939.x.

PMID:
28565728
35.

Mitochondrial DNA reveals formation of nonhybrid frogs by natural matings between hemiclonal hybrids.

Hotz H, Beerli P, Spolsky C.

Mol Biol Evol. 1992 Jul;9(4):610-20.

PMID:
1352842

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