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Items: 1 to 50 of 61

1.

DNA and RNA topoisomerase activities of Top3β are promoted by mediator protein Tudor domain-containing protein 3.

Siaw GE, Liu IF, Lin PY, Been MD, Hsieh TS.

Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):E5544-51. doi: 10.1073/pnas.1605517113. Epub 2016 Aug 31.

2.

The poly(A) site sequence in HDV RNA alters both extent and rate of self-cleavage of the antigenomic ribozyme.

Brown AL, Perrotta AT, Wadkins TS, Been MD.

Nucleic Acids Res. 2008 May;36(9):2990-3000. doi: 10.1093/nar/gkn156. Epub 2008 Apr 3.

3.

Essential role of an active-site guanine in glmS ribozyme catalysis.

Klein DJ, Been MD, Ferré-D'Amaré AR.

J Am Chem Soc. 2007 Dec 5;129(48):14858-9. Epub 2007 Nov 9.

PMID:
17990888
4.

Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme.

Klein DJ, Wilkinson SR, Been MD, Ferré-D'Amaré AR.

J Mol Biol. 2007 Oct 12;373(1):178-89. Epub 2007 Aug 10.

5.

A single nucleotide linked to a switch in metal ion reactivity preference in the HDV ribozymes.

Perrotta AT, Been MD.

Biochemistry. 2007 May 1;46(17):5124-30. Epub 2007 Apr 7.

PMID:
17417876
6.

Molecular biology. Versatility of self-cleaving ribozymes.

Been MD.

Science. 2006 Sep 22;313(5794):1745-7. No abstract available.

PMID:
16990539
7.

HDV ribozyme activity in monovalent cations.

Perrotta AT, Been MD.

Biochemistry. 2006 Sep 26;45(38):11357-65.

PMID:
16981696
8.

HDV ribozymes.

Been MD.

Curr Top Microbiol Immunol. 2006;307:47-65. Review.

PMID:
16903220
9.

Chemical rescue, multiple ionizable groups, and general acid-base catalysis in the HDV genomic ribozyme.

Perrotta AT, Wadkins TS, Been MD.

RNA. 2006 Jul;12(7):1282-91. Epub 2006 May 11.

10.
11.

Catalytic strategies of the hepatitis delta virus ribozymes.

Shih IH, Been MD.

Annu Rev Biochem. 2002;71:887-917. Epub 2001 Nov 9. Review.

PMID:
12045114
12.

Ribozyme activity in the genomic and antigenomic RNA strands of hepatitis delta virus.

Wadkins TS, Been MD.

Cell Mol Life Sci. 2002 Jan;59(1):112-25. Review.

PMID:
11846024
13.

Energetic contribution of non-essential 5' sequence to catalysis in a hepatitis delta virus ribozyme.

Shih Ih, Been MD.

EMBO J. 2001 Sep 3;20(17):4884-91. Erratum in: EMBO J 2001 Sep 17;20(18):5302.

14.
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17.

Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme.

Perrotta AT, Shih I, Been MD.

Science. 1999 Oct 1;286(5437):123-6.

19.
23.

Self-cleaving ribozymes of hepatitis delta virus RNA.

Been MD, Wickham GS.

Eur J Biochem. 1997 Aug 1;247(3):741-53. Review.

24.
25.

A small circular TAR RNA decoy specifically inhibits Tat-activated HIV-1 transcription.

Bohjanen PR, Colvin RA, Puttaraju M, Been MD, Garcia-Blanco MA.

Nucleic Acids Res. 1996 Oct 1;24(19):3733-8.

27.

Exon circularization in mammalian nuclear extracts.

Pasman Z, Been MD, Garcia-Blanco MA.

RNA. 1996 Jun;2(6):603-10.

28.
29.

Circularizing ribozymes and decoy-competitors by autocatalytic splicing in vitro and in vivo.

Puttaraju M, Been MD.

SAAS Bull Biochem Biotechnol. 1996;9:77-82.

PMID:
8652136
31.

Generation and characterization of circular Bacillus subtilis RNase P RNA; activation by RNase P protein.

Puttaraju M, Beebe JA, Niranjanakumari S, Been MD, Fierke CA.

Nucleic Acids Symp Ser. 1995;(33):92-4.

PMID:
8643411
32.
33.
34.

Cis- and trans-acting ribozymes from a human pathogen, hepatitis delta virus.

Been MD.

Trends Biochem Sci. 1994 Jun;19(6):251-6. Review.

PMID:
8073503
35.

A circular trans-acting hepatitis delta virus ribozyme.

Puttaraju M, Perrotta AT, Been MD.

Nucleic Acids Res. 1993 Sep 11;21(18):4253-8.

36.
37.

Experimental evidence for the secondary structure of the hepatitis delta virus ribozyme.

Perrotta AT, Rosenstein SP, Been MD.

Prog Clin Biol Res. 1993;382:69-77.

PMID:
8502719
38.

Secondary structure of the self-cleaving RNA of hepatitis delta virus: applications to catalytic RNA design.

Been MD, Perrotta AT, Rosenstein SP.

Biochemistry. 1992 Dec 1;31(47):11843-52.

PMID:
1445917
39.

Numerous group I introns with variable distributions in the ribosomal DNA of a lichen fungus.

DePriest PT, Been MD.

J Mol Biol. 1992 Nov 20;228(2):315-21.

PMID:
1453441
40.

Group I permuted intron-exon (PIE) sequences self-splice to produce circular exons.

Puttaraju M, Been MD.

Nucleic Acids Res. 1992 Oct 25;20(20):5357-64.

41.
42.
43.

Group I intron self-splicing with adenosine: evidence for a single nucleoside-binding site.

Been MD, Perrotta AT.

Science. 1991 Apr 19;252(5004):434-7.

PMID:
2017681
44.
46.
47.
49.

Structures involved in Tetrahymena rRNA self-splicing and RNA enzyme activity.

Been MD, Barfod ET, Burke JM, Price JV, Tanner NK, Zaug AJ, Cech TR.

Cold Spring Harb Symp Quant Biol. 1987;52:147-57. No abstract available.

PMID:
3454258
50.

The Tetrahymena ribozyme acts like an RNA restriction endonuclease.

Zaug AJ, Been MD, Cech TR.

Nature. 1986 Dec 4-10;324(6096):429-33. Erratum in: Nature 1987 Feb 12-18;325(6105):646.

PMID:
3537808

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