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Biomarkers for grain yield stability in rice under drought stress.

Melandri G, AbdElgawad H, Riewe D, Hageman JA, Asard H, Beemster GTS, Kadam N, Jagadish K, Altmann T, Ruyter-Spira C, Bouwmeester H.

J Exp Bot. 2019 May 14. pii: erz221. doi: 10.1093/jxb/erz221. [Epub ahead of print]


Cellular Dynamics, a Systems Biology Bottleneck.

Beemster GTS.

Trends Plant Sci. 2019 May;24(5):386-388. doi: 10.1016/j.tplants.2019.03.004. Epub 2019 Mar 22.


O3 pollution in a future climate increases the competition between summer rape and wild mustard.

Kacienė G, Miškelytė D, AbdElgawad H, Beemster G, Asard H, Dikšaitytė A, Žaltauskaitė J, Sujetovienė G, Januškaitienė I, Juknys R.

Plant Physiol Biochem. 2019 Feb;135:194-205. doi: 10.1016/j.plaphy.2018.11.031. Epub 2018 Dec 11.


Low-oxygen response is triggered by an ATP-dependent shift in oleoyl-CoA in Arabidopsis.

Schmidt RR, Fulda M, Paul MV, Anders M, Plum F, Weits DA, Kosmacz M, Larson TR, Graham IA, Beemster GTS, Licausi F, Geigenberger P, Schippers JH, van Dongen JT.

Proc Natl Acad Sci U S A. 2018 Dec 18;115(51):E12101-E12110. doi: 10.1073/pnas.1809429115. Epub 2018 Dec 3.


Multiple mechanisms explain how reduced KRP expression increases leaf size of Arabidopsis thaliana.

Sizani BL, Kalve S, Markakis MN, Domagalska MA, Stelmaszewska J, AbdElgawad H, Zhao X, De Veylder L, De Vos D, Broeckhove J, Schnittger A, Beemster GTS.

New Phytol. 2019 Feb;221(3):1345-1358. doi: 10.1111/nph.15458. Epub 2018 Sep 29.


Transcriptome profiling of HepG2 cells exposed to the flame retardant 9,10-dihydro-9-oxa-10-phosphaphenanthrene 10-oxide (DOPO).

Krivoshiev BV, Beemster GTS, Sprangers K, Cuypers B, Laukens K, Blust R, Husson SJ.

Toxicol Res (Camb). 2018 Mar 12;7(3):492-502. doi: 10.1039/c8tx00006a. eCollection 2018 May 8.


Effects of ocean acidification on the levels of primary and secondary metabolites in the brown macroalga Sargassum vulgare at different time scales.

Kumar A, AbdElgawad H, Castellano I, Selim S, Beemster GTS, Asard H, Buia MC, Palumbo A.

Sci Total Environ. 2018 Dec 1;643:946-956. doi: 10.1016/j.scitotenv.2018.06.176. Epub 2018 Jun 28.


Euclidean distance can identify the mannitol level that produces the most remarkable integral effect on sugarcane micropropagation in temporary immersion bioreactors.

Gómez D, Hernández LÁ, Yabor L, Beemster GTS, Tebbe CC, Papenbrock J, Lorenzo JC.

J Plant Res. 2018 Jul;131(4):719-724. doi: 10.1007/s10265-018-1028-7. Epub 2018 Mar 15.


Dynamics of metabolic responses to periods of combined heat and drought in Arabidopsis thaliana under ambient and elevated atmospheric CO2.

Zinta G, AbdElgawad H, Peshev D, Weedon JT, Van den Ende W, Nijs I, Janssens IA, Beemster GTS, Asard H.

J Exp Bot. 2018 Apr 9;69(8):2159-2170. doi: 10.1093/jxb/ery055.


A toxicogenomics approach to screen chlorinated flame retardants tris(2-chloroethyl) phosphate and tris(2-chloroisopropyl) phosphate for potential health effects.

Krivoshiev BV, Beemster GTS, Sprangers K, Blust R, Husson SJ.

J Appl Toxicol. 2018 Apr;38(4):459-470. doi: 10.1002/jat.3553. Epub 2017 Nov 16.


Toxicogenomics of the flame retardant tris (2-butoxyethyl) phosphate in HepG2 cells using RNA-seq.

Krivoshiev BV, Beemster GTS, Sprangers K, Cuypers B, Laukens K, Blust R, Husson SJ.

Toxicol In Vitro. 2018 Feb;46:178-188. doi: 10.1016/j.tiv.2017.10.011. Epub 2017 Oct 9.


Perturbation of Auxin Homeostasis and Signaling by PINOID Overexpression Induces Stress Responses in Arabidopsis.

Saini K, AbdElgawad H, Markakis MN, Schoenaers S, Asard H, Prinsen E, Beemster GTS, Vissenberg K.

Front Plant Sci. 2017 Aug 2;8:1308. doi: 10.3389/fpls.2017.01308. eCollection 2017.


The reduction in maize leaf growth under mild drought affects the transition between cell division and cell expansion and cannot be restored by elevated gibberellic acid levels.

Nelissen H, Sun XH, Rymen B, Jikumaru Y, Kojima M, Takebayashi Y, Abbeloos R, Demuynck K, Storme V, Vuylsteke M, De Block J, Herman D, Coppens F, Maere S, Kamiya Y, Sakakibara H, Beemster GTS, Inzé D.

Plant Biotechnol J. 2018 Feb;16(2):615-627. doi: 10.1111/pbi.12801. Epub 2017 Sep 4.


Alteration in Auxin Homeostasis and Signaling by Overexpression Of PINOID Kinase Causes Leaf Growth Defects in Arabidopsis thaliana.

Saini K, Markakis MN, Zdanio M, Balcerowicz DM, Beeckman T, De Veylder L, Prinsen E, Beemster GTS, Vissenberg K.

Front Plant Sci. 2017 Jun 14;8:1009. doi: 10.3389/fpls.2017.01009. eCollection 2017.


Virtual Plant Tissue: Building Blocks for Next-Generation Plant Growth Simulation.

De Vos D, Dzhurakhalov A, Stijven S, Klosiewicz P, Beemster GTS, Broeckhove J.

Front Plant Sci. 2017 May 4;8:686. doi: 10.3389/fpls.2017.00686. eCollection 2017.


Physiological and Biochemical Analyses Shed Light on the Response of Sargassum vulgare to Ocean Acidification at Different Time Scales.

Kumar A, AbdElgawad H, Castellano I, Lorenti M, Delledonne M, Beemster GTS, Asard H, Buia MC, Palumbo A.

Front Plant Sci. 2017 Apr 19;8:570. doi: 10.3389/fpls.2017.00570. eCollection 2017.


What determines organ size differences between species? A meta-analysis of the cellular basis.

Gázquez A, Beemster GTS.

New Phytol. 2017 Jul;215(1):299-308. doi: 10.1111/nph.14573. Epub 2017 Apr 25.


UV-B Inhibits Leaf Growth through Changes in Growth Regulating Factors and Gibberellin Levels.

Fina J, Casadevall R, AbdElgawad H, Prinsen E, Markakis MN, Beemster GTS, Casati P.

Plant Physiol. 2017 Jun;174(2):1110-1126. doi: 10.1104/pp.17.00365. Epub 2017 Apr 11.


Semi-synthetic sapogenin exerts neuroprotective effects by skewing the brain ischemia reperfusion transcriptome towards inflammatory resolution.

García-Pupo L, Sánchez JR, Ratman D, Pérez-Novo C, Declerck K, De Bosscher K, Markakis MN, Beemster G, Zaldo A, Nuñez Figueredo Y, Delgado-Hernández R, Vanden Berghe W.

Brain Behav Immun. 2017 Aug;64:103-115. doi: 10.1016/j.bbi.2017.04.002. Epub 2017 Apr 6.


High Antioxidant Activity Facilitates Maintenance of Cell Division in Leaves of Drought Tolerant Maize Hybrids.

Avramova V, AbdElgawad H, Vasileva I, Petrova AS, Holek A, Mariën J, Asard H, Beemster GT.

Front Plant Sci. 2017 Feb 2;8:84. doi: 10.3389/fpls.2017.00084. eCollection 2017.


Molecular response of Sargassum vulgare to acidification at volcanic CO2 vents: insights from de novo transcriptomic analysis.

Kumar A, Castellano I, Patti FP, Delledonne M, Abdelgawad H, Beemster GTS, Asard H, Palumbo A, Buia MC.

Mol Ecol. 2017 Apr;26(8):2276-2290. doi: 10.1111/mec.14034. Epub 2017 Mar 6.


Future Climate CO2 Levels Mitigate Stress Impact on Plants: Increased Defense or Decreased Challenge?

AbdElgawad H, Zinta G, Beemster GT, Janssens IA, Asard H.

Front Plant Sci. 2016 May 2;7:556. doi: 10.3389/fpls.2016.00556. eCollection 2016. Review.


Screening for drought tolerance of maize hybrids by multi-scale analysis of root and shoot traits at the seedling stage.

Avramova V, Nagel KA, AbdElgawad H, Bustos D, DuPlessis M, Fiorani F, Beemster GT.

J Exp Bot. 2016 Apr;67(8):2453-66. doi: 10.1093/jxb/erw055. Epub 2016 Feb 17.


AtPDCD5 Plays a Role in Programmed Cell Death after UV-B Exposure in Arabidopsis.

Falcone Ferreyra ML, Casadevall R, D'Andrea L, AbdElgawad H, Beemster GT, Casati P.

Plant Physiol. 2016 Apr;170(4):2444-60. doi: 10.1104/pp.16.00033. Epub 2016 Feb 16.



Dzhurakhalov A, Avramova V, Vissenberg K, Beemster GT, Broeckhove J.

Commun Agric Appl Biol Sci. 2015;80(1):103-9. No abstract available.


Functional Conservation in the SIAMESE-RELATED Family of Cyclin-Dependent Kinase Inhibitors in Land Plants.

Kumar N, Harashima H, Kalve S, Bramsiepe J, Wang K, Sizani BL, Bertrand LL, Johnson MC, Faulk C, Dale R, Simmons LA, Churchman ML, Sugimoto K, Kato N, Dasanayake M, Beemster G, Schnittger A, Larkin JC.

Plant Cell. 2015 Nov;27(11):3065-80. doi: 10.1105/tpc.15.00489. Epub 2015 Nov 6.


The Maize Leaf: Another Perspective on Growth Regulation.

Avramova V, Sprangers K, Beemster GTS.

Trends Plant Sci. 2015 Dec;20(12):787-797. doi: 10.1016/j.tplants.2015.09.002. Epub 2015 Oct 17. Review.


Core cell cycle regulatory genes in rice and their expression profiles across the growth zone of the leaf.

Pettkó-Szandtner A, Cserháti M, Barrôco RM, Hariharan S, Dudits D, Beemster GT.

J Plant Res. 2015 Nov;128(6):953-74. doi: 10.1007/s10265-015-0754-3. Epub 2015 Oct 12.


Drought Induces Distinct Growth Response, Protection, and Recovery Mechanisms in the Maize Leaf Growth Zone.

Avramova V, AbdElgawad H, Zhang Z, Fotschki B, Casadevall R, Vergauwen L, Knapen D, Taleisnik E, Guisez Y, Asard H, Beemster GT.

Plant Physiol. 2015 Oct;169(2):1382-96. doi: 10.1104/pp.15.00276. Epub 2015 Aug 21.


Facing the Future: Effects of Short-Term Climate Extremes on Isoprene-Emitting and Nonemitting Poplar.

Vanzo E, Jud W, Li Z, Albert A, Domagalska MA, Ghirardo A, Niederbacher B, Frenzel J, Beemster GT, Asard H, Rennenberg H, Sharkey TD, Hansel A, Schnitzler JP.

Plant Physiol. 2015 Sep;169(1):560-75. doi: 10.1104/pp.15.00871. Epub 2015 Jul 10.


Grassland species differentially regulate proline concentrations under future climate conditions: an integrated biochemical and modelling approach.

AbdElgawad H, De Vos D, Zinta G, Domagalska MA, Beemster GT, Asard H.

New Phytol. 2015 Oct;208(2):354-69. doi: 10.1111/nph.13481. Epub 2015 Jun 2.


Putting theory to the test: which regulatory mechanisms can drive realistic growth of a root?

De Vos D, Vissenberg K, Broeckhove J, Beemster GT.

PLoS Comput Biol. 2014 Oct 30;10(10):e1003910. doi: 10.1371/journal.pcbi.1003910. eCollection 2014 Oct.


Three-dimensional patterns of cell division and expansion throughout the development of Arabidopsis thaliana leaves.

Kalve S, Fotschki J, Beeckman T, Vissenberg K, Beemster GT.

J Exp Bot. 2014 Dec;65(22):6385-97. doi: 10.1093/jxb/eru358. Epub 2014 Sep 9.


Leaf development: a cellular perspective.

Kalve S, De Vos D, Beemster GT.

Front Plant Sci. 2014 Jul 31;5:362. doi: 10.3389/fpls.2014.00362. eCollection 2014. Review.


Physiological, biochemical, and genome-wide transcriptional analysis reveals that elevated CO2 mitigates the impact of combined heat wave and drought stress in Arabidopsis thaliana at multiple organizational levels.

Zinta G, AbdElgawad H, Domagalska MA, Vergauwen L, Knapen D, Nijs I, Janssens IA, Beemster GT, Asard H.

Glob Chang Biol. 2014 Dec;20(12):3670-85. doi: 10.1111/gcb.12626. Epub 2014 Jun 4.


Differential methylation during maize leaf growth targets developmentally regulated genes.

Candaele J, Demuynck K, Mosoti D, Beemster GT, Inzé D, Nelissen H.

Plant Physiol. 2014 Mar;164(3):1350-64. doi: 10.1104/pp.113.233312. Epub 2014 Jan 31.


The growth zone of maize leaves subjected to drought stress offers unique possibilities to confirm transcriptome analysis with cellular, physiological and biochemical measurements.

Avramova V, Abdelgawad H, Asard H, Beemster GT.

Commun Agric Appl Biol Sci. 2014;79(1):111-4. No abstract available.


Repeated selection of Arabidopsis thaliana under heat stress.

Zinta G, Abdelgawad H, Janssens IA, Beemster GT, Asard H.

Commun Agric Appl Biol Sci. 2014;79(1):83-5. No abstract available.


Kinematic analysis of cell division in leaves of mono- and dicotyledonous species: a basis for understanding growth and developing refined molecular sampling strategies.

Nelissen H, Rymen B, Coppens F, Dhondt S, Fiorani F, Beemster GT.

Methods Mol Biol. 2013;959:247-64. doi: 10.1007/978-1-62703-221-6_17.


Brassinosteroid production and signaling differentially control cell division and expansion in the leaf.

Zhiponova MK, Vanhoutte I, Boudolf V, Betti C, Dhondt S, Coppens F, Mylle E, Maes S, González-García MP, Caño-Delgado AI, Inzé D, Beemster GT, De Veylder L, Russinova E.

New Phytol. 2013 Jan;197(2):490-502. doi: 10.1111/nph.12036. Epub 2012 Nov 28.


Numerical bifurcation analysis of the pattern formation in a cell based auxin transport model.

Draelants D, Broeckhove J, Beemster GT, Vanroose W.

J Math Biol. 2013 Nov;67(5):1279-305. doi: 10.1007/s00285-012-0588-8. Epub 2012 Sep 27.


SAMBA, a plant-specific anaphase-promoting complex/cyclosome regulator is involved in early development and A-type cyclin stabilization.

Eloy NB, Gonzalez N, Van Leene J, Maleux K, Vanhaeren H, De Milde L, Dhondt S, Vercruysse L, Witters E, Mercier R, Cromer L, Beemster GT, Remaut H, Van Montagu MC, De Jaeger G, Ferreira PC, Inzé D.

Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):13853-8. doi: 10.1073/pnas.1211418109. Epub 2012 Aug 6.


AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development.

Péret B, Swarup K, Ferguson A, Seth M, Yang Y, Dhondt S, James N, Casimiro I, Perry P, Syed A, Yang H, Reemmer J, Venison E, Howells C, Perez-Amador MA, Yun J, Alonso J, Beemster GT, Laplaze L, Murphy A, Bennett MJ, Nielsen E, Swarup R.

Plant Cell. 2012 Jul;24(7):2874-85. doi: 10.1105/tpc.112.097766. Epub 2012 Jul 5.


A local maximum in gibberellin levels regulates maize leaf growth by spatial control of cell division.

Nelissen H, Rymen B, Jikumaru Y, Demuynck K, Van Lijsebettens M, Kamiya Y, Inzé D, Beemster GT.

Curr Biol. 2012 Jul 10;22(13):1183-7. doi: 10.1016/j.cub.2012.04.065. Epub 2012 Jun 7. Erratum in: Curr Biol. 2012 Jul 10;22(13):1266.


Hormonal regulation of root growth: integrating local activities into global behaviour.

Ubeda-Tomás S, Beemster GT, Bennett MJ.

Trends Plant Sci. 2012 Jun;17(6):326-31. doi: 10.1016/j.tplants.2012.02.002. Epub 2012 Mar 6. Review.


Towards mechanistic models of plant organ growth.

De Vos D, Dzhurakhalov A, Draelants D, Bogaerts I, Kalve S, Prinsen E, Vissenberg K, Vanroose W, Broeckhove J, Beemster GT.

J Exp Bot. 2012 May;63(9):3325-37. doi: 10.1093/jxb/ers037. Epub 2012 Feb 27. Review.


Exit from proliferation during leaf development in Arabidopsis thaliana: a not-so-gradual process.

Andriankaja M, Dhondt S, De Bodt S, Vanhaeren H, Coppens F, De Milde L, Mühlenbock P, Skirycz A, Gonzalez N, Beemster GT, Inzé D.

Dev Cell. 2012 Jan 17;22(1):64-78. doi: 10.1016/j.devcel.2011.11.011. Epub 2012 Jan 5.


Identification of putative cancer genes through data integration and comparative genomics between plants and humans.

Quimbaya M, Vandepoele K, Raspé E, Matthijs M, Dhondt S, Beemster GT, Berx G, De Veylder L.

Cell Mol Life Sci. 2012 Jun;69(12):2041-55. doi: 10.1007/s00018-011-0909-x. Epub 2012 Jan 5.


Quantitative analysis of venation patterns of Arabidopsis leaves by supervised image analysis.

Dhondt S, Van Haerenborgh D, Van Cauwenbergh C, Merks RM, Philips W, Beemster GT, Inzé D.

Plant J. 2012 Feb;69(3):553-63. doi: 10.1111/j.1365-313X.2011.04803.x. Epub 2011 Nov 8.

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