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Items: 1 to 50 of 84

2.

A case report of clonal EBV-like memory CD4+ T cell activation in fatal checkpoint inhibitor-induced encephalitis.

Johnson DB, McDonnell WJ, Gonzalez-Ericsson PI, Al-Rohil RN, Mobley BC, Salem JE, Wang DY, Sanchez V, Wang Y, Chastain CA, Barker K, Liang Y, Warren S, Beechem JM, Menzies AM, Tio M, Long GV, Cohen JV, Guidon AC, O'Hare M, Chandra S, Chowdhary A, Lebrun-Vignes B, Goldinger SM, Rushing EJ, Buchbinder EI, Mallal SA, Shi C, Xu Y, Moslehi JJ, Sanders ME, Sosman JA, Balko JM.

Nat Med. 2019 Aug;25(8):1243-1250. doi: 10.1038/s41591-019-0523-2. Epub 2019 Jul 22.

PMID:
31332390
3.

High-Plex Predictive Marker Discovery for Melanoma Immunotherapy-Treated Patients Using Digital Spatial Profiling.

Toki MI, Merritt CR, Wong PF, Smithy JW, Kluger HM, Syrigos KN, Ong GT, Warren SE, Beechem JM, Rimm DL.

Clin Cancer Res. 2019 Sep 15;25(18):5503-5512. doi: 10.1158/1078-0432.CCR-19-0104. Epub 2019 Jun 12.

PMID:
31189645
4.

Implementation of a Multiplex and Quantitative Proteomics Platform for Assessing Protein Lysates Using DNA-Barcoded Antibodies.

Lee J, Geiss GK, Demirkan G, Vellano CP, Filanoski B, Lu Y, Ju Z, Yu S, Guo H, Bogatzki LY, Carter W, Meredith RK, Krishnamurthy S, Ding Z, Beechem JM, Mills GB.

Mol Cell Proteomics. 2018 Jun;17(6):1245-1258. doi: 10.1074/mcp.RA117.000291. Epub 2018 Mar 12.

5.

Controlled detection in composite nanoresonant array for surface plasmon resonance sensing.

Pang L, Chen HM, Wang L, Beechem JM, Fainman Y.

Opt Express. 2009 Aug 17;17(17):14700-9.

PMID:
19687948
6.

Bioinformatics methods for prioritizing serum biomarker candidates.

Klee EW, Finlay JA, McDonald C, Attewell JR, Hebrink D, Dyer R, Love B, Vasmatzis G, Li TM, Beechem JM, Klee GG.

Clin Chem. 2006 Nov;52(11):2162-4. No abstract available.

7.

A systematic method for selection of promising serum protein biomarkers to improve prostate cancer (PCa1) detection.

Finlay JA, Klee EW, McDonald C, Attewell JR, Hebrink D, Dyer R, Love B, Vasmatzis G, Li TM, Beechem JM, Klee GG.

Clin Chem. 2006 Nov;52(11):2159-62. No abstract available.

8.
9.

Cell cycle dependent morphology changes and associated mitochondrial DNA redistribution in mitochondria of human cell lines.

Margineantu DH, Gregory Cox W, Sundell L, Sherwood SW, Beechem JM, Capaldi RA.

Mitochondrion. 2002 May;1(5):425-35.

PMID:
16120295
10.

Compartmentalization of transport and phosphorylation of glucose in a hepatoma cell line.

Whitesell RR, Ardehali H, Beechem JM, Powers AC, Van der Meer W, Perriott LM, Granner DK.

Biochem J. 2005 Mar 1;386(Pt 2):245-53.

11.

Fluorescence-intensity multiplexing: simultaneous seven-marker, two-color immunophenotyping using flow cytometry.

Bradford JA, Buller G, Suter M, Ignatius M, Beechem JM.

Cytometry A. 2004 Oct;61(2):142-52.

12.
14.

Simultaneous DNA binding and bending by EcoRV endonuclease observed by real-time fluorescence.

Hiller DA, Fogg JM, Martin AM, Beechem JM, Reich NO, Perona JJ.

Biochemistry. 2003 Dec 16;42(49):14375-85.

PMID:
14661948
15.

Quantitative comparison of long-wavelength Alexa Fluor dyes to Cy dyes: fluorescence of the dyes and their bioconjugates.

Berlier JE, Rothe A, Buller G, Bradford J, Gray DR, Filanoski BJ, Telford WG, Yue S, Liu J, Cheung CY, Chang W, Hirsch JD, Beechem JM, Haugland RP, Haugland RP.

J Histochem Cytochem. 2003 Dec;51(12):1699-712.

PMID:
14623938
16.

Mapping glycosylation changes related to cancer using the Multiplexed Proteomics technology: a protein differential display approach.

Schulenberg B, Beechem JM, Patton WF.

J Chromatogr B Analyt Technol Biomed Life Sci. 2003 Aug 5;793(1):127-39.

PMID:
12880860
17.

Quantitative analysis of protein phosphorylation status and protein kinase activity on microarrays using a novel fluorescent phosphorylation sensor dye.

Martin K, Steinberg TH, Cooley LA, Gee KR, Beechem JM, Patton WF.

Proteomics. 2003 Jul;3(7):1244-55.

PMID:
12872225
18.

A sensitive two-color electrophoretic mobility shift assay for detecting both nucleic acids and protein in gels.

Jing D, Agnew J, Patton WF, Hendrickson J, Beechem JM.

Proteomics. 2003 Jul;3(7):1172-80.

PMID:
12872218
19.

Global quantitative phosphoprotein analysis using Multiplexed Proteomics technology.

Steinberg TH, Agnew BJ, Gee KR, Leung WY, Goodman T, Schulenberg B, Hendrickson J, Beechem JM, Haugland RP, Patton WF.

Proteomics. 2003 Jul;3(7):1128-44.

PMID:
12872214
20.

Development of fluorescence-based selective assays for serine/threonine and tyrosine phosphatases.

Pastula C, Johnson I, Beechem JM, Patton WF.

Comb Chem High Throughput Screen. 2003 Jun;6(4):341-6.

PMID:
12769677
21.

Strategies and solid-phase formats for the analysis of protein and peptide phosphorylation employing a novel fluorescent phosphorylation sensor dye.

Martin K, Steinberg TH, Goodman T, Schulenberg B, Kilgore JA, Gee KR, Beechem JM, Patton WF.

Comb Chem High Throughput Screen. 2003 Jun;6(4):331-9.

PMID:
12769676
22.

Analysis of steady-state protein phosphorylation in mitochondria using a novel fluorescent phosphosensor dye.

Schulenberg B, Aggeler R, Beechem JM, Capaldi RA, Patton WF.

J Biol Chem. 2003 Jul 18;278(29):27251-5. Epub 2003 May 20.

23.

A stopped-flow fluorescence anisotropy method for measuring hormone binding and dissociation kinetics with cell-surface receptors in living cells.

Wilkinson JC, Beechem JM, Staros JV.

J Recept Signal Transduct Res. 2002 Feb-Nov;22(1-4):357-71.

PMID:
12503627
24.

Easily reversible desthiobiotin binding to streptavidin, avidin, and other biotin-binding proteins: uses for protein labeling, detection, and isolation.

Hirsch JD, Eslamizar L, Filanoski BJ, Malekzadeh N, Haugland RP, Beechem JM, Haugland RP.

Anal Biochem. 2002 Sep 15;308(2):343-57.

PMID:
12419349
25.

Control of glucose phosphorylation in L6 myotubes by compartmentalization, hexokinase, and glucose transport.

Whitesell RR, Ardehali H, Printz RL, Beechem JM, Knobel SM, Piston DW, Granner DK, Van Der Meer W, Perriott LM, May JM.

Biochem J. 2003 Feb 15;370(Pt 1):47-56.

26.

Rainbow's end: the quest for multiplexed fluorescence quantitative analysis in proteomics.

Patton WF, Beechem JM.

Curr Opin Chem Biol. 2002 Feb;6(1):63-9. Review.

PMID:
11827825
27.
28.

Fluorescence-based analyses of the effects of full-length recombinant TAF130p on the interaction of TATA box-binding protein with TATA box DNA.

Banik U, Beechem JM, Klebanow E, Schroeder S, Weil PA.

J Biol Chem. 2001 Dec 28;276(52):49100-9. Epub 2001 Oct 24.

29.

Accessory factors facilitate the binding of glucocorticoid receptor to the phosphoenolpyruvate carboxykinase gene promoter.

Stafford JM, Wilkinson JC, Beechem JM, Granner DK.

J Biol Chem. 2001 Oct 26;276(43):39885-91. Epub 2001 Aug 22.

30.
32.

Molecular mechanism and energetics of clamp assembly in Escherichia coli. The role of ATP hydrolysis when gamma complex loads beta on DNA.

Bertram JG, Bloom LB, Hingorani MM, Beechem JM, O'Donnell M, Goodman MF.

J Biol Chem. 2000 Sep 15;275(37):28413-20.

33.

A model for Escherichia coli DNA polymerase III holoenzyme assembly at primer/template ends. DNA triggers a change in binding specificity of the gamma complex clamp loader.

Ason B, Bertram JG, Hingorani MM, Beechem JM, O'Donnell M, Goodman MF, Bloom LB.

J Biol Chem. 2000 Jan 28;275(4):3006-15.

34.

DNA bending by EcoRI DNA methyltransferase accelerates base flipping but compromises specificity.

Allan BW, Garcia R, Maegley K, Mort J, Wong D, Lindstrom W, Beechem JM, Reich NO.

J Biol Chem. 1999 Jul 2;274(27):19269-75.

35.

Measurement of the absolute temporal coupling between DNA binding and base flipping.

Allan BW, Reich NO, Beechem JM.

Biochemistry. 1999 Apr 27;38(17):5308-14.

PMID:
10220317
36.
37.

Pre-steady state analysis of the assembly of wild type and mutant circular clamps of Escherichia coli DNA polymerase III onto DNA.

Bertram JG, Bloom LB, Turner J, O'Donnell M, Beechem JM, Goodman MF.

J Biol Chem. 1998 Sep 18;273(38):24564-74.

39.
40.

Exonuclease-polymerase active site partitioning of primer-template DNA strands and equilibrium Mg2+ binding properties of bacteriophage T4 DNA polymerase.

Beechem JM, Otto MR, Bloom LB, Eritja R, Reha-Krantz LJ, Goodman MF.

Biochemistry. 1998 Jul 14;37(28):10144-55.

PMID:
9665720
41.

Expanding time scales usher in a new era for kinetic studies.

Beechem JM.

Biophys J. 1998 May;74(5):2141. No abstract available.

42.
43.

Direct real time observation of base flipping by the EcoRI DNA methyltransferase.

Allan BW, Beechem JM, Lindstrom WM, Reich NO.

J Biol Chem. 1998 Jan 23;273(4):2368-73.

45.
46.

Distinct actions of cis and trans ATP within the double ring of the chaperonin GroEL.

Rye HS, Burston SG, Fenton WA, Beechem JM, Xu Z, Sigler PB, Horwich AL.

Nature. 1997 Aug 21;388(6644):792-8.

PMID:
9285593
50.

Dynamics of loading the beta sliding clamp of DNA polymerase III onto DNA.

Bloom LB, Turner J, Kelman Z, Beechem JM, O'Donnell M, Goodman MF.

J Biol Chem. 1996 Nov 29;271(48):30699-708.

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