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Items: 13


Presenting and sharing clinical data using the eTRIKS Standards Master Tree for tranSMART.

Barbosa-Silva A, Bratfalean D, Gu W, Satagopam V, Houston P, Becnel LB, Eifes S, Richard F, Tielmann A, Herzinger S, Rege K, Balling R, Peeters P, Schneider R.

Bioinformatics. 2019 May 1;35(9):1562-1565. doi: 10.1093/bioinformatics/bty809.


CDISC SHARE, a Global, Cloud-based Resource of Machine-Readable CDISC Standards for Clinical and Translational Research.

Hume S, Chow A, Evans J, Malfait F, Chason J, Wold JD, Kubick W, Becnel LB.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:94-103. eCollection 2018.


Global Standards to Expedite Learning From Medical Research Data.

Hudson LD, Kush RD, Navarro Almario E, Seigneuret N, Jackson T, Jauregui B, Jordan D, Fitzmartin R, Zhou FL, Malone JK, Galvez J, Becnel LB.

Clin Transl Sci. 2018 Jul;11(4):342-344. doi: 10.1111/cts.12556. Epub 2018 Apr 26. No abstract available.


Discovering relationships between nuclear receptor signaling pathways, genes, and tissues in Transcriptomine.

Becnel LB, Ochsner SA, Darlington YF, McOwiti A, Kankanamge WH, Dehart M, Naumov A, McKenna NJ.

Sci Signal. 2017 Apr 25;10(476). pii: eaah6275. doi: 10.1126/scisignal.aah6275.


BRIDG: a domain information model for translational and clinical protocol-driven research.

Becnel LB, Hastak S, Ver Hoef W, Milius RP, Slack M, Wold D, Glickman ML, Brodsky B, Jaffe C, Kush R, Helton E.

J Am Med Inform Assoc. 2017 Sep 1;24(5):882-890. doi: 10.1093/jamia/ocx004.


Improving the discoverability, accessibility, and citability of omics datasets: a case report.

Darlington YF, Naumov A, McOwiti A, Kankanamge WH, Becnel LB, McKenna NJ.

J Am Med Inform Assoc. 2017 Mar 1;24(2):388-393. doi: 10.1093/jamia/ocw096.


An open access pilot freely sharing cancer genomic data from participants in Texas.

Becnel LB, Pereira S, Drummond JA, Gingras MC, Covington KR, Kovar CL, Doddapaneni HV, Hu J, Muzny D, McGuire AL, Wheeler DA, Gibbs RA.

Sci Data. 2016 Feb 16;3:160010. doi: 10.1038/sdata.2016.10.


Nuclear Receptor Signaling Atlas: Opening Access to the Biology of Nuclear Receptor Signaling Pathways.

Becnel LB, Darlington YF, Ochsner SA, Easton-Marks JR, Watkins CM, McOwiti A, Kankanamge WH, Wise MW, DeHart M, Margolis RN, McKenna NJ.

PLoS One. 2015 Sep 1;10(9):e0135615. doi: 10.1371/journal.pone.0135615. eCollection 2015.


Acquire: an open-source comprehensive cancer biobanking system.

Dowst H, Pew B, Watkins C, McOwiti A, Barney J, Qu S, Becnel LB.

Bioinformatics. 2015 May 15;31(10):1655-62. doi: 10.1093/bioinformatics/btv012. Epub 2015 Jan 7.


Novel Conserved Genotypes Correspond to Antibiotic Resistance Phenotypes of E. coli Clinical Isolates.

Swick MC, Evangelista MA, Bodine TJ, Easton-Marks JR, Barth P, Shah MJ, Bormann Chung CA, Stanley S, McLaughlin SF, Lee CC, Sheth V, Doan Q, Hamill RJ, Steffen D, Becnel LB, Sucgang R, Zechiedrich L.

PLoS One. 2013 Jun 18;8(6):e65961. doi: 10.1371/journal.pone.0065961. Print 2013.


Minireview: progress and challenges in proteomics data management, sharing, and integration.

Becnel LB, McKenna NJ.

Mol Endocrinol. 2012 Oct;26(10):1660-74. Epub 2012 Aug 17. Review.


Transcriptomine, a web resource for nuclear receptor signaling transcriptomes.

Ochsner SA, Watkins CM, McOwiti A, Xu X, Darlington YF, Dehart MD, Cooney AJ, Steffen DL, Becnel LB, McKenna NJ.

Physiol Genomics. 2012 Sep 1;44(17):853-63. doi: 10.1152/physiolgenomics.00033.2012. Epub 2012 Jul 10.


Research resource: dkCOIN, the National Institute of Diabetes, Digestive and Kidney Diseases (NIDDK) consortium interconnectivity network: a pilot program to aggregate research resources generated by multiple research consortia.

McKenna NJ, Howard CL, Aufiero M, Easton-Marks J, Steffen DL, Becnel LB, Magnuson MA, McIndoe RA, Cartailler JP.

Mol Endocrinol. 2012 Oct;26(10):1675-81. Epub 2012 Jun 25.

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