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Iliotibial band autograft: what size is the graft? A mathematical and cadaveric model : ITB single and double strand size.

Beck JJ, Takamura K, Beck JM, Chang G, Bowen RE.

Arch Orthop Trauma Surg. 2019 May 25. doi: 10.1007/s00402-019-03208-5. [Epub ahead of print]


Neuronal Adaptation Reveals a Suboptimal Decoding of Orientation Tuned Populations in the Mouse Visual Cortex.

Jin M, Beck JM, Glickfeld LL.

J Neurosci. 2019 May 15;39(20):3867-3881. doi: 10.1523/JNEUROSCI.3172-18.2019. Epub 2019 Mar 4.


Statistical structure of locomotion and its modulation by odors.

Tao L, Ozarkar S, Beck JM, Bhandawat V.

Elife. 2019 Jan 8;8. pii: e41235. doi: 10.7554/eLife.41235.


Hamstring Autograft Too Small: How Much Allograft Do You Need to Supplement to a Desired Hybrid Graft Size?

Beck JJ, Takamura K, Beck JM, Bowen RE.

Arthroscopy. 2019 Feb;35(2):530-534. doi: 10.1016/j.arthro.2018.08.037. Epub 2019 Jan 3.


Resurrection and Reactivation of Acetylcholinesterase and Butyrylcholinesterase.

Franjesevic AJ, Sillart SB, Beck JM, Vyas S, Callam CS, Hadad CM.

Chemistry. 2019 Apr 11;25(21):5337-5371. doi: 10.1002/chem.201805075. Epub 2019 Feb 13. Review.


Neural implementation of Bayesian inference in a sensorimotor behavior.

Darlington TR, Beck JM, Lisberger SG.

Nat Neurosci. 2018 Oct;21(10):1442-1451. doi: 10.1038/s41593-018-0233-y. Epub 2018 Sep 17.


Addressing Gender Inequality in Our Disciplines: Report from the Association of Pulmonary, Critical Care, and Sleep Division Chiefs.

Thomson CC, Riekert KA, Bates CK, Jena AB, Borok Z, McCallister JW, Schnapp LM, Lama VN, Kraft M, Davis SD, Finn P, Carson SS, Beck JM, Powell CA, Tanoue LT, Kaminski N, Dixon AE.

Ann Am Thorac Soc. 2018 Dec;15(12):1382-1390. doi: 10.1513/AnnalsATS.201804-252AR.


Probabilistic inference under time pressure leads to a cortical-to-subcortical shift in decision evidence integration.

Oh-Descher H, Beck JM, Ferrari S, Sommer MA, Egner T.

Neuroimage. 2017 Nov 15;162:138-150. doi: 10.1016/j.neuroimage.2017.08.069. Epub 2017 Sep 5.


Neuron's eye view: Inferring features of complex stimuli from neural responses.

Chen X, Beck JM, Pearson JM.

PLoS Comput Biol. 2017 Aug 21;13(8):e1005645. doi: 10.1371/journal.pcbi.1005645. eCollection 2017 Aug.


Study of para-Quinone Methide Precursors toward the Realkylation of Aged Acetylcholinesterase.

Yoder RJ, Zhuang Q, Beck JM, Franjesevic A, Blanton TG, Sillart S, Secor T, Guerra L, Brown JD, Reid C, McElroy CA, Doğan Ekici Ö, Callam CS, Hadad CM.

ACS Med Chem Lett. 2017 May 8;8(6):622-627. doi: 10.1021/acsmedchemlett.7b00037. eCollection 2017 Jun 8.


Implementation of a Professional Society Core Curriculum and Integrated Maintenance of Certification Program.

Carlos WG, Poston JT, Michaud GC, Dela Cruz CS, Luks AM, Boyer D, Moore PE, McSparron JI, Hayes MM, Balachandran JS, Wang TS, Larsson E, Siegel-Gasiewski J, Kantz A, Beck JM, Thomson CC.

Ann Am Thorac Soc. 2017 Apr;14(4):495-499. doi: 10.1513/AnnalsATS.201612-1001PS.


Microbiome in the pathogenesis of cystic fibrosis and lung transplant-related disease.

Cribbs SK, Beck JM.

Transl Res. 2017 Jan;179:84-96. doi: 10.1016/j.trsl.2016.07.022. Epub 2016 Aug 4. Review.


Presence of Tropheryma whipplei in Different Body Sites in a Cohort of Healthy Subjects.

Qin S, Clausen E, Lucht L, Michael H, Beck JM, Curtis JL, Freeman CM, Morris A.

Am J Respir Crit Care Med. 2016 Jul 15;194(2):243-5. doi: 10.1164/rccm.201601-0162LE. No abstract available.


Satisficing in split-second decision making is characterized by strategic cue discounting.

Oh H, Beck JM, Zhu P, Sommer MA, Ferrari S, Egner T.

J Exp Psychol Learn Mem Cogn. 2016 Dec;42(12):1937-1956. Epub 2016 Jun 2.


Predictors of Attrition in a Cohort Study of HIV Infection and Methamphetamine Dependence.

Cattie J, Marquine MJ, Bolden KA, Obermeit LC, Morgan EE, Franklin DR, Umlauf A, Beck JM, Atkinson JH, Grant I, Woods SP; TMARC Group.

J Subst Use. 2015;20(6):407-416. Epub 2015 Feb 3.


Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals.

Beck JM, Schloss PD, Venkataraman A, Twigg H 3rd, Jablonski KA, Bushman FD, Campbell TB, Charlson ES, Collman RG, Crothers K, Curtis JL, Drews KL, Flores SC, Fontenot AP, Foulkes MA, Frank I, Ghedin E, Huang L, Lynch SV, Morris A, Palmer BE, Schmidt TM, Sodergren E, Weinstock GM, Young VB; Lung HIV Microbiome Project.

Am J Respir Crit Care Med. 2015 Dec 1;192(11):1335-44. doi: 10.1164/rccm.201501-0128OC.


Vascular Risk Factors in Patients with Different Subtypes of Ischemic Stroke May Affect Their Outcome after Intravenous tPA.

Dong Y, Cao W, Ren J, Nair DS, Parker S, Jahnel JL, Swanson-Devlin TG, Beck JM, Mathews M, McNeil CJ, Upadhyaya M, Gao Y, Dong Q, Wang DZ.

PLoS One. 2015 Aug 6;10(8):e0131487. doi: 10.1371/journal.pone.0131487. eCollection 2015.


Intravenous Tissue Plasminogen Activator Can Be Safely Given without Complete Blood Count Results Back.

Dong Y, Yang L, Ren J, Nair DS, Parker S, Jahnel JL, Swanson-Devlin TG, Beck JM, Mathews M, McNeil CJ, Ling Y, Cheng X, Gao Y, Dong Q, Wang DZ.

PLoS One. 2015 Jul 6;10(7):e0131234. doi: 10.1371/journal.pone.0131234. eCollection 2015.


Spatial Variation in the Healthy Human Lung Microbiome and the Adapted Island Model of Lung Biogeography.

Dickson RP, Erb-Downward JR, Freeman CM, McCloskey L, Beck JM, Huffnagle GB, Curtis JL.

Ann Am Thorac Soc. 2015 Jun;12(6):821-30. doi: 10.1513/AnnalsATS.201501-029OC.


Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals.

Bassis CM, Erb-Downward JR, Dickson RP, Freeman CM, Schmidt TM, Young VB, Beck JM, Curtis JL, Huffnagle GB.

MBio. 2015 Mar 3;6(2):e00037. doi: 10.1128/mBio.00037-15.


Application of a neutral community model to assess structuring of the human lung microbiome.

Venkataraman A, Bassis CM, Beck JM, Young VB, Curtis JL, Huffnagle GB, Schmidt TM.

MBio. 2015 Jan 20;6(1). pii: e02284-14. doi: 10.1128/mBio.02284-14.


Entrustable professional activities and curricular milestones for fellowship training in pulmonary and critical care medicine: executive summary from the Multi-Society Working Group.

Fessler HE, Addrizzo-Harris D, Beck JM, Buckley JD, Pastores SM, Piquette CA, Rowley JA, Spevetz A.

Crit Care Med. 2014 Oct;42(10):2290-1. doi: 10.1097/CCM.0000000000000615.


The microbiome and the lung.

Cui L, Morris A, Huang L, Beck JM, Twigg HL 3rd, von Mutius E, Ghedin E.

Ann Am Thorac Soc. 2014 Aug;11 Suppl 4:S227-32. doi: 10.1513/AnnalsATS.201402-052PL. Review.


Infections in "noninfectious" lung diseases.

Fitzpatrick ME, Sethi S, Daley CL, Ray P, Beck JM, Gingo MR.

Ann Am Thorac Soc. 2014 Aug;11 Suppl 4:S221-6. doi: 10.1513/AnnalsATS.201401-041PL. Review.


Entrustable professional activities and curricular milestones for fellowship training in pulmonary and critical care medicine: report of a multisociety working group.

Fessler HE, Addrizzo-Harris D, Beck JM, Buckley JD, Pastores SM, Piquette CA, Rowley JA, Spevetz A.

Chest. 2014 Sep;146(3):813-834. doi: 10.1378/chest.14-0710.


Changes in the lung microbiome following lung transplantation include the emergence of two distinct Pseudomonas species with distinct clinical associations.

Dickson RP, Erb-Downward JR, Freeman CM, Walker N, Scales BS, Beck JM, Martinez FJ, Curtis JL, Lama VN, Huffnagle GB.

PLoS One. 2014 May 15;9(5):e97214. doi: 10.1371/journal.pone.0097214. eCollection 2014.


Quantitative structure-activity relationship models of chemical transformations from matched pairs analyses.

Beck JM, Springer C.

J Chem Inf Model. 2014 Apr 28;54(4):1226-34. doi: 10.1021/ci500012n. Epub 2014 Mar 31.


Combined exposure to cigarette smoke and nontypeable Haemophilus influenzae drives development of a COPD phenotype in mice.

Ganesan S, Comstock AT, Kinker B, Mancuso P, Beck JM, Sajjan US.

Respir Res. 2014 Feb 4;15:11. doi: 10.1186/1465-9921-15-11.


ABCs of the lung microbiome.

Beck JM.

Ann Am Thorac Soc. 2014 Jan;11 Suppl 1:S3-6. doi: 10.1513/AnnalsATS.201306-188MG.


Use of bronchoalveolar lavage to assess the respiratory microbiome: signal in the noise.

Twigg HL 3rd, Morris A, Ghedin E, Curtis JL, Huffnagle GB, Crothers K, Campbell TB, Flores SC, Fontenot AP, Beck JM, Huang L, Lynch S, Knox KS, Weinstock G; Lung HIV Microbiome Project.

Lancet Respir Med. 2013 Jul;1(5):354-6. doi: 10.1016/S2213-2600(13)70117-6. Epub 2013 Jul 8. No abstract available.


Trial-to-trial, uncertainty-based adjustment of decision boundaries in visual categorization.

Qamar AT, Cotton RJ, George RG, Beck JM, Prezhdo E, Laudano A, Tolias AS, Ma WJ.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20332-7. doi: 10.1073/pnas.1219756110. Epub 2013 Nov 22.


Probabilistic brains: knowns and unknowns.

Pouget A, Beck JM, Ma WJ, Latham PE.

Nat Neurosci. 2013 Sep;16(9):1170-8. doi: 10.1038/nn.3495. Epub 2013 Aug 18. Review.


Abnormalities in host defense associated with HIV infection.

Beck JM.

Clin Chest Med. 2013 Jun;34(2):143-53. doi: 10.1016/j.ccm.2013.01.003. Epub 2013 Apr 8. Review.


Smoking decreases the response of human lung macrophages to double-stranded RNA by reducing TLR3 expression.

Todt JC, Freeman CM, Brown JP, Sonstein J, Ames TM, McCubbrey AL, Martinez FJ, Chensue SW, Beck JM, Curtis JL.

Respir Res. 2013 Mar 9;14:33. doi: 10.1186/1465-9921-14-33.


Comparison of the respiratory microbiome in healthy nonsmokers and smokers.

Morris A, Beck JM, Schloss PD, Campbell TB, Crothers K, Curtis JL, Flores SC, Fontenot AP, Ghedin E, Huang L, Jablonski K, Kleerup E, Lynch SV, Sodergren E, Twigg H, Young VB, Bassis CM, Venkataraman A, Schmidt TM, Weinstock GM; Lung HIV Microbiome Project.

Am J Respir Crit Care Med. 2013 May 15;187(10):1067-75. doi: 10.1164/rccm.201210-1913OC.


Widespread colonization of the lung by Tropheryma whipplei in HIV infection.

Lozupone C, Cota-Gomez A, Palmer BE, Linderman DJ, Charlson ES, Sodergren E, Mitreva M, Abubucker S, Martin J, Yao G, Campbell TB, Flores SC, Ackerman G, Stombaugh J, Ursell L, Beck JM, Curtis JL, Young VB, Lynch SV, Huang L, Weinstock GM, Knox KS, Twigg H, Morris A, Ghedin E, Bushman FD, Collman RG, Knight R, Fontenot AP; Lung HIV Microbiome Project.

Am J Respir Crit Care Med. 2013 May 15;187(10):1110-7. doi: 10.1164/rccm.201211-2145OC.


The microbiome of the lung.

Beck JM, Young VB, Huffnagle GB.

Transl Res. 2012 Oct;160(4):258-66. doi: 10.1016/j.trsl.2012.02.005. Epub 2012 Feb 28. Review.


Not noisy, just wrong: the role of suboptimal inference in behavioral variability.

Beck JM, Ma WJ, Pitkow X, Latham PE, Pouget A.

Neuron. 2012 Apr 12;74(1):30-9. doi: 10.1016/j.neuron.2012.03.016.


C2 hydroxyl group governs the difference in hydrolysis rates of methyl-α-D-glycero-D-guloseptanoside and methyl-β-D-glycero-D-guloseptanoside.

Beck JM, Miller SM, Peczuh MW, Hadad CM.

J Org Chem. 2012 May 4;77(9):4242-51. doi: 10.1021/jo202639g. Epub 2012 Apr 17.


Marginalization in neural circuits with divisive normalization.

Beck JM, Latham PE, Pouget A.

J Neurosci. 2011 Oct 26;31(43):15310-9. doi: 10.1523/JNEUROSCI.1706-11.2011.


Behavior and neural basis of near-optimal visual search.

Ma WJ, Navalpakkam V, Beck JM, Berg Rv, Pouget A.

Nat Neurosci. 2011 Jun;14(6):783-90. doi: 10.1038/nn.2814. Epub 2011 May 8.


Perceptual learning as improved probabilistic inference in early sensory areas.

Bejjanki VR, Beck JM, Lu ZL, Pouget A.

Nat Neurosci. 2011 May;14(5):642-8. doi: 10.1038/nn.2796. Epub 2011 Apr 3.


An official ATS workshop report: Emerging issues and current controversies in HIV-associated pulmonary diseases.

Morris A, Crothers K, Beck JM, Huang L; American Thoracic Society Committee on HIV Pulmonary Disease.

Proc Am Thorac Soc. 2011 Mar;8(1):17-26. doi: 10.1513/pats.2009-047WS. Review.


Overexpression of sICAM-1 in the alveolar epithelial space results in an exaggerated inflammatory response and early death in Gram negative pneumonia.

Mendez MP, Monroy YK, Du M, Preston AM, Tolle L, Lin Y, VanDussen KL, Samuelson LC, Standiford TJ, Curtis JL, Beck JM, Christensen PJ, Paine R 3rd.

Respir Res. 2011 Jan 19;12:12. doi: 10.1186/1465-9921-12-12.


Butyrylcholinesterase and G116H, G116S, G117H, G117N, E197Q and G117H/E197Q mutants: a molecular dynamics study.

Vyas S, Beck JM, Xia S, Zhang J, Hadad CM.

Chem Biol Interact. 2010 Sep 6;187(1-3):241-5. doi: 10.1016/j.cbi.2010.04.004. Epub 2010 May 4.


Computational Modeling of Human Paraoxonase 1: Preparation of Protein Models, Binding Studies, and Mechanistic Insights.

Sanan TT, Muthukrishnan S, Beck JM, Tao P, Hayes CJ, Otto TC, Cerasoli DM, Lenz DE, Hadad CM.

J Phys Org Chem. 2010 Apr 1;23(4):357-369.


Reaction profiles of the interaction between sarin and acetylcholinesterase and the S203C mutant: model nucleophiles and QM/MM potential energy surfaces.

Beck JM, Hadad CM.

Chem Biol Interact. 2010 Sep 6;187(1-3):220-4. doi: 10.1016/j.cbi.2010.02.012. Epub 2010 Feb 13.


Chemical synthesis of two series of nerve agent model compounds and their stereoselective interaction with human acetylcholinesterase and human butyrylcholinesterase.

Barakat NH, Zheng X, Gilley CB, MacDonald M, Okolotowicz K, Cashman JR, Vyas S, Beck JM, Hadad CM, Zhang J.

Chem Res Toxicol. 2009 Oct;22(10):1669-79. doi: 10.1021/tx900096j.


On the maximization of information flow between spiking neurons.

Parra LC, Beck JM, Bell AJ.

Neural Comput. 2009 Nov;21(11):2991-3009. doi: 10.1162/neco.2009.04-06-184.


Immune reconstitution during Pneumocystis lung infection: disruption of surfactant component expression and function by S-nitrosylation.

Atochina-Vasserman EN, Gow AJ, Abramova H, Guo CJ, Tomer Y, Preston AM, Beck JM, Beers MF.

J Immunol. 2009 Feb 15;182(4):2277-87. doi: 10.4049/jimmunol.0802775.

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