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Items: 1 to 50 of 137

1.

Workshop summary: Potential usefulness and feasibility of a US national mesothelioma registry.

Cummings KJ, Becich MJ, Blackley DJ, Deapen D, Harrison R, Hassan R, Henley SJ, Hesdorffer M, Horton DK, Mazurek JM, Pass HI, Taioli E, Wu XC, Zauderer MG, Weissman DN.

Am J Ind Med. 2019 Nov 19. doi: 10.1002/ajim.23062. [Epub ahead of print]

PMID:
31743489
2.

Factors influencing malignant mesothelioma survival: a retrospective review of the National Mesothelioma Virtual Bank cohort.

Amin W, Linkov F, Landsittel DP, Silverstein JC, Bashara W, Gaudioso C, Feldman MD, Pass HI, Melamed J, Friedberg JS, Becich MJ.

Version 3. F1000Res. 2018 Aug 3 [revised 2019 Jan 1];7:1184. doi: 10.12688/f1000research.15512.3. eCollection 2018.

3.

Discrimination of low- and high-grade appendiceal mucinous neoplasms by targeted sequencing of cancer-related variants.

LaFramboise WA, Pai RK, Petrosko P, Belsky MA, Dhir A, Howard PG, Becich MJ, Holtzman MP, Ahrendt SA, Pingpank JF, Zeh HJ, Dhir R, Bartlett DL, Choudry HA.

Mod Pathol. 2019 Jul;32(8):1197-1209. doi: 10.1038/s41379-019-0256-2. Epub 2019 Apr 8.

PMID:
30962504
4.

Integration of Cancer Registry Data into the Text Information Extraction System: Leveraging the Structured Data Import Tool.

Linkov F, Silverstein JC, Davis M, Crocker B, Hao D, Schneider A, Schwenk M, Winters S, Zelnis J, Lee AV, Becich MJ.

J Pathol Inform. 2018 Dec 24;9:47. doi: 10.4103/jpi.jpi_38_18. eCollection 2018.

5.

Accrual to Clinical Trials (ACT): A Clinical and Translational Science Award Consortium Network.

Visweswaran S, Becich MJ, D'Itri VS, Sendro ER, MacFadden D, Anderson NR, Allen KA, Ranganathan D, Murphy SN, Morrato EH, Pincus HA, Toto R, Firestein GS, Nadler LM, Reis SE.

JAMIA Open. 2018 Oct;1(2):147-152. doi: 10.1093/jamiaopen/ooy033. Epub 2018 Aug 21.

6.

Computer Science, Biology and Biomedical Informatics academy: Outcomes from 5 years of Immersing High-school Students into Informatics Research.

King AJ, Fisher AM, Becich MJ, Boone DN.

J Pathol Inform. 2017 Feb 28;8:2. doi: 10.4103/2153-3539.201110. eCollection 2017.

7.

The Building Blocks of Interoperability. A Multisite Analysis of Patient Demographic Attributes Available for Matching.

Culbertson A, Goel S, Madden MB, Safaeinili N, Jackson KL, Carton T, Waitman R, Liu M, Krishnamurthy A, Hall L, Cappella N, Visweswaran S, Becich MJ, Applegate R, Bernstam E, Rothman R, Matheny M, Lipori G, Bian J, Hogan W, Bell D, Martin A, Grannis S, Klann J, Sutphen R, O'Hara AB, Kho A.

Appl Clin Inform. 2017 Apr 5;8(2):322-336. doi: 10.4338/ACI-2016-11-RA-0196.

8.

Validation of a Gene Expression Test for Mesothelioma Prognosis in Formalin-Fixed Paraffin-Embedded Tissues.

De Rienzo A, Cook RW, Wilkinson J, Gustafson CE, Amin W, Johnson CE, Oelschlager KM, Maetzold DJ, Stone JF, Feldman MD, Becich MJ, Yeap BY, Richards WG, Bueno R.

J Mol Diagn. 2017 Jan;19(1):65-71. doi: 10.1016/j.jmoldx.2016.07.011. Epub 2016 Nov 15.

9.

How can we improve Science, Technology, Engineering, and Math education to encourage careers in Biomedical and Pathology Informatics?

Uppal R, Mandava G, Romagnoli KM, King AJ, Draper AJ, Handen AL, Fisher AM, Becich MJ, Dutta-Moscato J.

J Pathol Inform. 2016 Jan 29;7:2. doi: 10.4103/2153-3539.175375. eCollection 2016.

10.

A Federated Network for Translational Cancer Research Using Clinical Data and Biospecimens.

Jacobson RS, Becich MJ, Bollag RJ, Chavan G, Corrigan J, Dhir R, Feldman MD, Gaudioso C, Legowski E, Maihle NJ, Mitchell K, Murphy M, Sakthivel M, Tseytlin E, Weaver J.

Cancer Res. 2015 Dec 15;75(24):5194-201. doi: 10.1158/0008-5472.CAN-15-1973. Review.

11.

Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study. Alpha-1 Protocol.

Strange C, Senior RM, Sciurba F, O'Neal S, Morris A, Wisniewski SR, Bowler R, Hochheiser HS, Becich MJ, Zhang Y, Leader JK, Methé BA, Kaminski N, Sandhaus RA; GRADS Alpha-1 Study Group.

Ann Am Thorac Soc. 2015 Oct;12(10):1551-60. doi: 10.1513/AnnalsATS.201503-143OC.

12.

The center for causal discovery of biomedical knowledge from big data.

Cooper GF, Bahar I, Becich MJ, Benos PV, Berg J, Espino JU, Glymour C, Jacobson RC, Kienholz M, Lee AV, Lu X, Scheines R; Center for Causal Discovery team.

J Am Med Inform Assoc. 2015 Nov;22(6):1132-6. doi: 10.1093/jamia/ocv059. Epub 2015 Jul 2.

13.

Computational Pathology: A Path Ahead.

Louis DN, Feldman M, Carter AB, Dighe AS, Pfeifer JD, Bry L, Almeida JS, Saltz J, Braun J, Tomaszewski JE, Gilbertson JR, Sinard JH, Gerber GK, Galli SJ, Golden JA, Becich MJ.

Arch Pathol Lab Med. 2016 Jan;140(1):41-50. doi: 10.5858/arpa.2015-0093-SA. Epub 2015 Jun 22.

14.

High Incidence of Somatic BAP1 alterations in sporadic malignant mesothelioma.

Nasu M, Emi M, Pastorino S, Tanji M, Powers A, Luk H, Baumann F, Zhang YA, Gazdar A, Kanodia S, Tiirikainen M, Flores E, Gaudino G, Becich MJ, Pass HI, Yang H, Carbone M.

J Thorac Oncol. 2015 Apr;10(4):565-76. doi: 10.1097/JTO.0000000000000471.

15.

Finding collaborators: toward interactive discovery tools for research network systems.

Borromeo CD, Schleyer TK, Becich MJ, Hochheiser H.

J Med Internet Res. 2014 Nov 4;16(11):e244. doi: 10.2196/jmir.3444.

16.

Creating a pipeline of talent for informatics: STEM initiative for high school students in computer science, biology, and biomedical informatics.

Dutta-Moscato J, Gopalakrishnan V, Lotze MT, Becich MJ.

J Pathol Inform. 2014 Mar 28;5(1):12. doi: 10.4103/2153-3539.129448. eCollection 2014.

17.

PaTH: towards a learning health system in the Mid-Atlantic region.

Amin W, Tsui FR, Borromeo C, Chuang CH, Espino JU, Ford D, Hwang W, Kapoor W, Lehmann H, Martich GD, Morton S, Paranjape A, Shirey W, Sorensen A, Becich MJ, Hess R; PaTH network team.

J Am Med Inform Assoc. 2014 Jul-Aug;21(4):633-6. doi: 10.1136/amiajnl-2014-002759. Epub 2014 May 12.

18.

Use of automated image analysis in evaluation of Mesothelioma Tissue Microarray (TMA) from National Mesothelioma Virtual Bank.

Amin W, Srinivasan M, Song SY, Parwani AV, Becich MJ.

Pathol Res Pract. 2014 Feb;210(2):79-82. doi: 10.1016/j.prp.2013.09.002. Epub 2013 Nov 14.

PMID:
24359722
19.

The history of pathology informatics: A global perspective.

Park S, Parwani AV, Aller RD, Banach L, Becich MJ, Borkenfeld S, Carter AB, Friedman BA, Rojo MG, Georgiou A, Kayser G, Kayser K, Legg M, Naugler C, Sawai T, Weiner H, Winsten D, Pantanowitz L.

J Pathol Inform. 2013 May 30;4:7. doi: 10.4103/2153-3539.112689. Print 2013.

20.

National Mesothelioma Virtual Bank: A Platform for Collaborative Research and Mesothelioma Biobanking Resource to Support Translational Research.

Amin W, Parwani AV, Melamed J, Flores R, Pennathur A, Valdivieso F, Whelan NB, Landreneau R, Luketich J, Feldman M, Pass HI, Becich MJ.

Lung Cancer Int. 2013;2013:765748. doi: 10.1155/2013/765748. Epub 2013 Sep 18.

21.

Pathology informatics fellowship retreats: The use of interactive scenarios and case studies as pathology informatics teaching tools.

Lee RE, McClintock DS, Balis UJ, Baron JM, Becich MJ, Beckwith BA, Brodsky VB, Carter AB, Dighe AS, Haghighi M, Hipp JD, Henricks WH, Kim JY, Klepseis VE, Kuo FC, Lane WJ, Levy BP, Onozato ML, Park SL, Sinard JH, Tuthill MJ, Gilbertson JR.

J Pathol Inform. 2012;3:41. doi: 10.4103/2153-3539.103995. Epub 2012 Nov 28.

22.

Next generation sequencing in clinical medicine: Challenges and lessons for pathology and biomedical informatics.

Gullapalli RR, Desai KV, Santana-Santos L, Kant JA, Becich MJ.

J Pathol Inform. 2012;3:40. doi: 10.4103/2153-3539.103013. Epub 2012 Oct 31.

23.

Clinical integration of next-generation sequencing technology.

Gullapalli RR, Lyons-Weiler M, Petrosko P, Dhir R, Becich MJ, LaFramboise WA.

Clin Lab Med. 2012 Dec;32(4):585-99. doi: 10.1016/j.cll.2012.07.005. Review.

24.

Evaluating de novo locus-disease discoveries in GWAS using the signal-to-noise ratio.

Jiang X, Barmada MM, Becich MJ.

AMIA Annu Symp Proc. 2011;2011:617-24. Epub 2011 Oct 22.

25.

Immunohistochemical staining of slit2 in primary and metastatic prostatic adenocarcinoma.

Bartholow TL, Becich MJ, Chandran UR, Parwani AV.

Transl Oncol. 2011 Oct;4(5):314-20. Epub 2011 Oct 1.

26.

A bayesian method for evaluating and discovering disease loci associations.

Jiang X, Barmada MM, Cooper GF, Becich MJ.

PLoS One. 2011;6(8):e22075. doi: 10.1371/journal.pone.0022075. Epub 2011 Aug 10.

27.

Immunohistochemical analysis of ezrin-radixin-moesin-binding phosphoprotein 50 in prostatic adenocarcinoma.

Bartholow TL, Becich MJ, Chandran UR, Parwani AV.

BMC Urol. 2011 Jun 14;11:12. doi: 10.1186/1471-2490-11-12.

28.

Proteomic analysis of stage I endometrial cancer tissue: identification of proteins associated with oxidative processes and inflammation.

Maxwell GL, Hood BL, Day R, Chandran U, Kirchner D, Kolli VS, Bateman NW, Allard J, Miller C, Sun M, Flint MS, Zahn C, Oliver J, Banerjee S, Litzi T, Parwani A, Sandburg G, Rose S, Becich MJ, Berchuck A, Kohn E, Risinger JI, Conrads TP.

Gynecol Oncol. 2011 Jun 1;121(3):586-94. doi: 10.1016/j.ygyno.2011.02.031. Epub 2011 Apr 1.

PMID:
21458040
29.

Immunohistochemical profiles of claudin-3 in primary and metastatic prostatic adenocarcinoma.

Bartholow TL, Chandran UR, Becich MJ, Parwani AV.

Diagn Pathol. 2011 Jan 21;6:12. doi: 10.1186/1746-1596-6-12.

30.

Immunohistochemical staining of radixin and moesin in prostatic adenocarcinoma.

Bartholow TL, Chandran UR, Becich MJ, Parwani AV.

BMC Clin Pathol. 2011 Jan 14;11:1. doi: 10.1186/1472-6890-11-1.

31.

Automated ancillary cancer history classification for mesothelioma patients from free-text clinical reports.

Wilson RA, Chapman WW, Defries SJ, Becich MJ, Chapman BE.

J Pathol Inform. 2010 Oct 11;1:24. doi: 10.4103/2153-3539.71065.

32.

The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research.

Tenenbaum JD, Whetzel PL, Anderson K, Borromeo CD, Dinov ID, Gabriel D, Kirschner B, Mirel B, Morris T, Noy N, Nyulas C, Rubenson D, Saxman PR, Singh H, Whelan N, Wright Z, Athey BD, Becich MJ, Ginsburg GS, Musen MA, Smith KA, Tarantal AF, Rubin DL, Lyster P.

J Biomed Inform. 2011 Feb;44(1):137-45. doi: 10.1016/j.jbi.2010.10.003. Epub 2010 Oct 16.

33.

A decade of experience in the development and implementation of tissue banking informatics tools for intra and inter-institutional translational research.

Amin W, Singh H, Pople AK, Winters S, Dhir R, Parwani AV, Becich MJ.

J Pathol Inform. 2010 Aug 10;1. pii: 12. doi: 10.4103/2153-3539.68314.

34.

The tissue microarray OWL schema: An open-source tool for sharing tissue microarray data.

Kang HP, Borromeo CD, Berman JJ, Becich MJ.

J Pathol Inform. 2010 Jul 13;1. pii: 9. doi: 10.4103/2153-3539.65347.

35.

Telepathology for patient care: what am I getting myself into?

Williams S, Henricks WH, Becich MJ, Toscano M, Carter AB.

Adv Anat Pathol. 2010 Mar;17(2):130-49. doi: 10.1097/PAP.0b013e3181cfb788. Review.

PMID:
20179435
36.

Proteins secreted by embryonic stem cells activate cardiomyocytes through ligand binding pathways.

LaFramboise WA, Petrosko P, Krill-Burger JM, Morris DR, McCoy AR, Scalise D, Malehorn DE, Guthrie RD, Becich MJ, Dhir R.

J Proteomics. 2010 Mar 10;73(5):992-1003. doi: 10.1016/j.jprot.2009.12.013. Epub 2010 Jan 4.

37.

Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs.

Bernstam EV, Hersh WR, Johnson SB, Chute CG, Nguyen H, Sim I, Nahm M, Weiner MG, Miller P, DiLaura RP, Overcash M, Lehmann HP, Eichmann D, Athey BD, Scheuermann RH, Anderson N, Starren J, Harris PA, Smith JW, Barbour E, Silverstein JC, Krusch DA, Nagarajan R, Becich MJ; CTSA Biomedical Informatics Key Function Committee.

Acad Med. 2009 Jul;84(7):964-70. doi: 10.1097/ACM.0b013e3181a8144d. Review.

38.

Unintended consequences of health information technology: a need for biomedical informatics.

Bernstam EV, Hersh WR, Sim I, Eichmann D, Silverstein JC, Smith JW, Becich MJ.

J Biomed Inform. 2010 Oct;43(5):828-30. doi: 10.1016/j.jbi.2009.05.009. Epub 2009 Jun 7. No abstract available.

39.

Provider management of and satisfaction with laboratory testing in the nursing home setting: results of a national internet-based survey.

Shirts BH, Perera S, Hanlon JT, Roumani YF, Studenski SA, Nace DA, Becich MJ, Handler SM.

J Am Med Dir Assoc. 2009 Mar;10(3):161-166.e3. doi: 10.1016/j.jamda.2008.08.018. Epub 2009 Jan 8.

40.

Assessing the performance characteristics of signals used by a clinical event monitor to detect adverse drug reactions in the nursing home.

Handler SM, Hanlon JT, Perera S, Saul MI, Fridsma DB, Visweswaran S, Studenski SA, Roumani YF, Castle NG, Nace DA, Becich MJ.

AMIA Annu Symp Proc. 2008 Nov 6:278-82.

41.

Towards a data sharing culture: recommendations for leadership from academic health centers.

Piwowar HA, Becich MJ, Bilofsky H, Crowley RS; caBIG Data Sharing and Intellectual Capital Workspace.

PLoS Med. 2008 Sep 30;5(9):e183. doi: 10.1371/journal.pmed.0050183. Epub 2008 Sep 2. No abstract available.

42.

National Mesothelioma Virtual Bank: a standard based biospecimen and clinical data resource to enhance translational research.

Amin W, Parwani AV, Schmandt L, Mohanty SK, Farhat G, Pople AK, Winters SB, Whelan NB, Schneider AM, Milnes JT, Valdivieso FA, Feldman M, Pass HI, Dhir R, Melamed J, Becich MJ.

BMC Cancer. 2008 Aug 13;8:236. doi: 10.1186/1471-2407-8-236.

43.

A multidisciplinary approach to honest broker services for tissue banks and clinical data: a pragmatic and practical model.

Dhir R, Patel AA, Winters S, Bisceglia M, Swanson D, Aamodt R, Becich MJ.

Cancer. 2008 Oct 1;113(7):1705-15. doi: 10.1002/cncr.23768.

44.

Frequency of laboratory monitoring of chronic medications administered to nursing facility residents: results of a national Internet-based study.

Handler SM, Shirts BH, Perera S, Becich MJ, Castle NG, Hanlon JT.

Consult Pharm. 2008 May;23(5):387-95.

45.

The development and deployment of Common Data Elements for tissue banks for translational research in cancer - an emerging standard based approach for the Mesothelioma Virtual Tissue Bank.

Mohanty SK, Mistry AT, Amin W, Parwani AV, Pople AK, Schmandt L, Winters SB, Milliken E, Kim P, Whelan NB, Farhat G, Melamed J, Taioli E, Dhir R, Pass HI, Becich MJ.

BMC Cancer. 2008 Apr 8;8:91. doi: 10.1186/1471-2407-8-91.

46.

Development of an instrument for measuring clinicians' power perceptions in the workplace.

Bartos CE, Fridsma DB, Butler BS, Penrod LE, Becich MJ, Crowley RS.

J Biomed Inform. 2008 Dec;41(6):1041-9. doi: 10.1016/j.jbi.2008.02.004. Epub 2008 Mar 4.

47.

Prevalence of incidental prostate cancer in the general population: a study of healthy organ donors.

Yin M, Bastacky S, Chandran U, Becich MJ, Dhir R.

J Urol. 2008 Mar;179(3):892-5; discussion 895. doi: 10.1016/j.juro.2007.10.057. Epub 2008 Jan 22.

PMID:
18207193
48.

The importance of pathology informatics in translational research.

Mohanty SK, Parwani AV, Crowley RS, Winters S, Becich MJ.

Adv Anat Pathol. 2007 Sep;14(5):320-2. Review.

PMID:
17717431
49.

Effect of Lean method implementation in the histopathology section of an anatomical pathology laboratory.

Raab SS, Grzybicki DM, Condel JL, Stewart WR, Turcsanyi BD, Mahood LK, Becich MJ.

J Clin Pathol. 2008 Nov;61(11):1193-9. Epub 2007 Aug 3.

PMID:
17675533
50.

Synoptic tool for reporting of hematological and lymphoid neoplasms based on World Health Organization classification and College of American Pathologists checklist.

Mohanty SK, Piccoli AL, Devine LJ, Patel AA, William GC, Winters SB, Becich MJ, Parwani AV.

BMC Cancer. 2007 Jul 31;7:144.

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