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Items: 1 to 50 of 238

1.

Comparative proteomics of related symbiotic mussel species reveals high variability of host-symbiont interactions.

Ponnudurai R, Heiden SE, Sayavedra L, Hinzke T, Kleiner M, Hentschker C, Felbeck H, Sievert SM, Schlüter R, Becher D, Schweder T, Markert S.

ISME J. 2019 Nov 4. doi: 10.1038/s41396-019-0517-6. [Epub ahead of print]

PMID:
31680119
2.

Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome.

Hickl O, Heintz-Buschart A, Trautwein-Schult A, Hercog R, Bork P, Wilmes P, Becher D.

Microorganisms. 2019 Sep 19;7(9). pii: E367. doi: 10.3390/microorganisms7090367.

3.

Identification and optimization of PrsA in Bacillus subtilis for improved yield of amylase.

Quesada-Ganuza A, Antelo-Varela M, Mouritzen JC, Bartel J, Becher D, Gjermansen M, Hallin PF, Appel KF, Kilstrup M, Rasmussen MD, Nielsen AK.

Microb Cell Fact. 2019 Sep 17;18(1):158. doi: 10.1186/s12934-019-1203-0.

4.

Ariadne's Thread in the Analytical Labyrinth of Membrane Proteins: Integration of Targeted and Shotgun Proteomics for Global Absolute Quantification of Membrane Proteins.

Antelo-Varela M, Bartel J, Quesada-Ganuza A, Appel K, Bernal-Cabas M, Sura T, Otto A, Rasmussen M, van Dijl JM, Nielsen A, Maaß S, Becher D.

Anal Chem. 2019 Sep 17;91(18):11972-11980. doi: 10.1021/acs.analchem.9b02869. Epub 2019 Sep 3.

PMID:
31424929
5.

Biopearling of Interconnected Outer Membrane Vesicle Chains by a Marine Flavobacterium.

Fischer T, Schorb M, Reintjes G, Kolovou A, Santarella-Mellwig R, Markert S, Rhiel E, Littmann S, Becher D, Schweder T, Harder J.

Appl Environ Microbiol. 2019 Sep 17;85(19). pii: e00829-19. doi: 10.1128/AEM.00829-19. Print 2019 Oct 1.

PMID:
31324630
6.

In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes.

Krüger K, Chafee M, Ben Francis T, Glavina Del Rio T, Becher D, Schweder T, Amann RI, Teeling H.

ISME J. 2019 Nov;13(11):2800-2816. doi: 10.1038/s41396-019-0476-y. Epub 2019 Jul 17.

7.

A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan.

Reisky L, Préchoux A, Zühlke MK, Bäumgen M, Robb CS, Gerlach N, Roret T, Stanetty C, Larocque R, Michel G, Song T, Markert S, Unfried F, Mihovilovic MD, Trautwein-Schult A, Becher D, Schweder T, Bornscheuer UT, Hehemann JH.

Nat Chem Biol. 2019 Aug;15(8):803-812. doi: 10.1038/s41589-019-0311-9. Epub 2019 Jul 8.

PMID:
31285597
8.

Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta.

Moeller FU, Webster NS, Herbold CW, Behnam F, Domman D, Albertsen M, Mooshammer M, Markert S, Turaev D, Becher D, Rattei T, Schweder T, Richter A, Watzka M, Nielsen PH, Wagner M.

Environ Microbiol. 2019 Oct;21(10):3831-3854. doi: 10.1111/1462-2920.14732. Epub 2019 Jul 25.

9.

Individual Physiological Adaptations Enable Selected Bacterial Taxa To Prevail during Long-Term Incubations.

Herlemann DPR, Markert S, Meeske C, Andersson AF, de Bruijn I, Hentschker C, Unfried F, Becher D, Jürgens K, Schweder T.

Appl Environ Microbiol. 2019 Jul 18;85(15). pii: e00825-19. doi: 10.1128/AEM.00825-19. Print 2019 Aug 1.

PMID:
31152013
10.

Exoproteome Heterogeneity among Closely Related Staphylococcus aureus t437 Isolates and Possible Implications for Virulence.

Zhao X, Palma Medina LM, Stobernack T, Glasner C, de Jong A, Utari P, Setroikromo R, Quax WJ, Otto A, Becher D, Buist G, van Dijl JM.

J Proteome Res. 2019 Jul 5;18(7):2859-2874. doi: 10.1021/acs.jproteome.9b00179. Epub 2019 Jun 5.

11.

Proteomic analysis of the food spoiler Pseudomonas fluorescens ITEM 17298 reveals the antibiofilm activity of the pepsin-digested bovine lactoferrin.

Quintieri L, Zühlke D, Fanelli F, Caputo L, Liuzzi VC, Logrieco AF, Hirschfeld C, Becher D, Riedel K.

Food Microbiol. 2019 Sep;82:177-193. doi: 10.1016/j.fm.2019.02.003. Epub 2019 Feb 8.

PMID:
31027772
12.

Virulence Factors Produced by Staphylococcus aureus Biofilms Have a Moonlighting Function Contributing to Biofilm Integrity.

Graf AC, Leonard A, Schäuble M, Rieckmann LM, Hoyer J, Maass S, Lalk M, Becher D, Pané-Farré J, Riedel K.

Mol Cell Proteomics. 2019 Jun;18(6):1036-1053. doi: 10.1074/mcp.RA118.001120. Epub 2019 Mar 8.

PMID:
30850421
13.

A homopolymeric adenosine tract in the promoter region of nspA influences factor H-mediated serum resistance in Neisseria meningitidis.

Claus H, Hubert K, Becher D, Otto A, Pawlik MC, Lappann I, Strobel L, Vogel U, Johswich K.

Sci Rep. 2019 Feb 25;9(1):2736. doi: 10.1038/s41598-019-39231-0.

14.

Subcellular Protein Fractionation in Legionella pneumophila and Preparation of the Derived Sub-proteomes for Analysis by Mass Spectrometry.

Maaß S, Moog G, Becher D.

Methods Mol Biol. 2019;1921:445-464. doi: 10.1007/978-1-4939-9048-1_28.

PMID:
30694509
15.

Investigating Lactococcus lactis MG1363 Response to Phage p2 Infection at the Proteome Level.

Lemay ML, Otto A, Maaß S, Plate K, Becher D, Moineau S.

Mol Cell Proteomics. 2019 Apr;18(4):704-714. doi: 10.1074/mcp.RA118.001135. Epub 2019 Jan 24.

PMID:
30679258
16.

Tuning the Mycobacterium tuberculosis Alternative Sigma Factor SigF through the Multidomain Regulator Rv1364c and Osmosensory Kinase Protein Kinase D.

Misra R, Menon D, Arora G, Virmani R, Gaur M, Naz S, Jaisinghani N, Bhaduri A, Bothra A, Maji A, Singhal A, Karwal P, Hentschker C, Becher D, Rao V, Nandicoori VK, Gandotra S, Singh Y.

J Bacteriol. 2019 Mar 13;201(7). pii: e00725-18. doi: 10.1128/JB.00725-18. Print 2019 Apr 1.

17.

Iron Regulation in Clostridioides difficile.

Berges M, Michel AM, Lassek C, Nuss AM, Beckstette M, Dersch P, Riedel K, Sievers S, Becher D, Otto A, Maaß S, Rohde M, Eckweiler D, Borrero-de Acuña JM, Jahn M, Neumann-Schaal M, Jahn D.

Front Microbiol. 2018 Dec 24;9:3183. doi: 10.3389/fmicb.2018.03183. eCollection 2018.

18.

Effects of hypoxia-reoxygenation stress on mitochondrial proteome and bioenergetics of the hypoxia-tolerant marine bivalve Crassostrea gigas.

Sokolov EP, Markert S, Hinzke T, Hirschfeld C, Becher D, Ponsuksili S, Sokolova IM.

J Proteomics. 2019 Mar 1;194:99-111. doi: 10.1016/j.jprot.2018.12.009. Epub 2018 Dec 12.

PMID:
30550986
19.

Proteomic Signatures of Clostridium difficile Stressed with Metronidazole, Vancomycin, or Fidaxomicin.

Maaß S, Otto A, Albrecht D, Riedel K, Trautwein-Schult A, Becher D.

Cells. 2018 Nov 15;7(11). pii: E213. doi: 10.3390/cells7110213.

20.

A Metabolic Labeling Strategy for Relative Protein Quantification in Clostridioides difficile.

Trautwein-Schult A, Maaß S, Plate K, Otto A, Becher D.

Front Microbiol. 2018 Oct 16;9:2371. doi: 10.3389/fmicb.2018.02371. eCollection 2018.

21.

A Secreted Bacterial Peptidylarginine Deiminase Can Neutralize Human Innate Immune Defenses.

Stobernack T, du Teil Espina M, Mulder LM, Palma Medina LM, Piebenga DR, Gabarrini G, Zhao X, Janssen KMJ, Hulzebos J, Brouwer E, Sura T, Becher D, van Winkelhoff AJ, Götz F, Otto A, Westra J, van Dijl JM.

MBio. 2018 Oct 30;9(5). pii: e01704-18. doi: 10.1128/mBio.01704-18.

22.

Transcriptomic and proteomic insight into the mechanism of cyclooctasulfur- versus thiosulfate-oxidation by the chemolithoautotroph Sulfurimonas denitrificans.

Götz F, Pjevac P, Markert S, McNichol J, Becher D, Schweder T, Mussmann M, Sievert SM.

Environ Microbiol. 2019 Jan;21(1):244-258. doi: 10.1111/1462-2920.14452. Epub 2018 Nov 26.

PMID:
30362214
23.

Toward the Quantitative Characterization of Arginine Phosphorylations in Staphylococcus aureus.

Junker S, Maaß S, Otto A, Hecker M, Becher D.

J Proteome Res. 2019 Jan 4;18(1):265-279. doi: 10.1021/acs.jproteome.8b00579. Epub 2018 Oct 25.

PMID:
30358407
24.

Alpha- and beta-mannan utilization by marine Bacteroidetes.

Chen J, Robb CS, Unfried F, Kappelmann L, Markert S, Song T, Harder J, Avcı B, Becher D, Xie P, Amann RI, Hehemann JH, Schweder T, Teeling H.

Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16.

PMID:
30246424
25.

Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production.

Hofmann JD, Otto A, Berges M, Biedendieck R, Michel AM, Becher D, Jahn D, Neumann-Schaal M.

Front Microbiol. 2018 Aug 21;9:1970. doi: 10.3389/fmicb.2018.01970. eCollection 2018.

26.

Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides.

Koch H, Dürwald A, Schweder T, Noriega-Ortega B, Vidal-Melgosa S, Hehemann JH, Dittmar T, Freese HM, Becher D, Simon M, Wietz M.

ISME J. 2019 Jan;13(1):92-103. doi: 10.1038/s41396-018-0252-4. Epub 2018 Aug 16.

PMID:
30116038
27.

Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans.

Kappelmann L, Krüger K, Hehemann JH, Harder J, Markert S, Unfried F, Becher D, Shapiro N, Schweder T, Amann RI, Teeling H.

ISME J. 2019 Jan;13(1):76-91. doi: 10.1038/s41396-018-0242-6. Epub 2018 Aug 15.

28.

An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae.

Nepal S, Bonn F, Grasso S, Stobernack T, de Jong A, Zhou K, Wedema R, Rosema S, Becher D, Otto A, Rossen JW, van Dijl JM, Bathoorn E.

Virulence. 2018;9(1):1377-1389. doi: 10.1080/21505594.2018.1509666.

29.

Proteomic analysis of bacterial (outer) membrane vesicles: progress and clinical potential.

Kroniger T, Otto A, Becher D.

Expert Rev Proteomics. 2018 Aug;15(8):623-626. doi: 10.1080/14789450.2018.1505509. Epub 2018 Aug 2. No abstract available.

PMID:
30068219
30.

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms.

Unfried F, Becker S, Robb CS, Hehemann JH, Markert S, Heiden SE, Hinzke T, Becher D, Reintjes G, Krüger K, Avcı B, Kappelmann L, Hahnke RL, Fischer T, Harder J, Teeling H, Fuchs B, Barbeyron T, Amann RI, Schweder T.

ISME J. 2018 Dec;12(12):2894-2906. doi: 10.1038/s41396-018-0243-5. Epub 2018 Jul 30.

31.

The Escherichia coli Type III Secretion System 2 Has a Global Effect on Cell Surface.

Shulman A, Yair Y, Biran D, Sura T, Otto A, Gophna U, Becher D, Hecker M, Ron EZ.

MBio. 2018 Jul 3;9(4). pii: e01070-18. doi: 10.1128/mBio.01070-18.

32.

Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys.

Pjevac P, Meier DV, Markert S, Hentschker C, Schweder T, Becher D, Gruber-Vodicka HR, Richter M, Bach W, Amann R, Meyerdierks A.

Front Microbiol. 2018 Apr 6;9:680. doi: 10.3389/fmicb.2018.00680. eCollection 2018.

33.

Proteomic response of Streptococcus pneumoniae to iron limitation.

Hoyer J, Bartel J, Gómez-Mejia A, Rohde M, Hirschfeld C, Heß N, Sura T, Maaß S, Hammerschmidt S, Becher D.

Int J Med Microbiol. 2018 Aug;308(6):713-721. doi: 10.1016/j.ijmm.2018.02.001. Epub 2018 Feb 13.

PMID:
29496408
34.

Differential daptomycin resistance development in Staphylococcus aureus strains with active and mutated gra regulatory systems.

Müller A, Grein F, Otto A, Gries K, Orlov D, Zarubaev V, Girard M, Sher X, Shamova O, Roemer T, François P, Becher D, Schneider T, Sahl HG.

Int J Med Microbiol. 2018 Apr;308(3):335-348. doi: 10.1016/j.ijmm.2017.12.002. Epub 2017 Dec 21.

PMID:
29429584
35.

Adaptation of Staphylococcus aureus to Airway Environments in Patients With Cystic Fibrosis by Upregulation of Superoxide Dismutase M and Iron-Scavenging Proteins.

Treffon J, Block D, Moche M, Reiss S, Fuchs S, Engelmann S, Becher D, Langhanki L, Mellmann A, Peters G, Kahl BC.

J Infect Dis. 2018 Apr 11;217(9):1453-1461. doi: 10.1093/infdis/jiy012.

PMID:
29325044
36.

A therapeutic Porphyromonas gingivalis gingipain vaccine induces neutralising IgG1 antibodies that protect against experimental periodontitis.

O'Brien-Simpson NM, Holden JA, Lenzo JC, Tan Y, Brammar GC, Walsh KA, Singleton W, Orth RKH, Slakeski N, Cross KJ, Darby IB, Becher D, Rowe T, Morelli AB, Hammet A, Nash A, Brown A, Ma B, Vingadassalom D, McCluskey J, Kleanthous H, Reynolds EC.

NPJ Vaccines. 2016 Dec 1;1:16022. doi: 10.1038/npjvaccines.2016.22. eCollection 2016.

37.

From the wound to the bench: exoproteome interplay between wound-colonizing Staphylococcus aureus strains and co-existing bacteria.

García-Pérez AN, de Jong A, Junker S, Becher D, Chlebowicz MA, Duipmans JC, Jonkman MF, van Dijl JM.

Virulence. 2018 Jan 1;9(1):363-378. doi: 10.1080/21505594.2017.1395129.

38.

The Proteomic Response of Bacillus pumilus Cells to Glucose Starvation.

Handtke S, Albrecht D, Otto A, Becher D, Hecker M, Voigt B.

Proteomics. 2018 Jan;18(1). doi: 10.1002/pmic.201700109.

PMID:
29193752
39.

Spectral Library Based Analysis of Arginine Phosphorylations in Staphylococcus aureus.

Junker S, Maaβ S, Otto A, Michalik S, Morgenroth F, Gerth U, Hecker M, Becher D.

Mol Cell Proteomics. 2018 Feb;17(2):335-348. doi: 10.1074/mcp.RA117.000378. Epub 2017 Nov 28.

40.

Proteome-wide alterations in an industrial clavulanic acid producing strain of Streptomyces clavuligerus.

Ünsaldı E, Kurt-Kızıldoğan A, Voigt B, Becher D, Özcengiz G.

Synth Syst Biotechnol. 2016 Nov 6;2(1):39-48. doi: 10.1016/j.synbio.2016.10.003. eCollection 2017 Mar.

41.

A quantitative assessment of the membrane-integral sub-proteome of a bacterial magnetic organelle.

Raschdorf O, Bonn F, Zeytuni N, Zarivach R, Becher D, Schüler D.

J Proteomics. 2018 Feb 10;172:89-99. doi: 10.1016/j.jprot.2017.10.007. Epub 2017 Oct 17.

PMID:
29054541
42.

Global quantification of phosphoproteins combining metabolic labeling and gel-based proteomics in B. pumilus.

Hentschker C, Dewald C, Otto A, Büttner K, Hecker M, Becher D.

Electrophoresis. 2018 Jan;39(2):334-343. doi: 10.1002/elps.201700220. Epub 2017 Oct 17.

PMID:
28944503
43.

A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.

Michalik S, Depke M, Murr A, Gesell Salazar M, Kusebauch U, Sun Z, Meyer TC, Surmann K, Pförtner H, Hildebrandt P, Weiss S, Palma Medina LM, Gutjahr M, Hammer E, Becher D, Pribyl T, Hammerschmidt S, Deutsch EW, Bader SL, Hecker M, Moritz RL, Mäder U, Völker U, Schmidt F.

Sci Rep. 2017 Sep 8;7(1):9718. doi: 10.1038/s41598-017-10059-w.

44.

Identification of new protein-coding genes with a potential role in the virulence of the plant pathogen Xanthomonas euvesicatoria.

Abendroth U, Adlung N, Otto A, Grüneisen B, Becher D, Bonas U.

BMC Genomics. 2017 Aug 16;18(1):625. doi: 10.1186/s12864-017-4041-7.

45.

The glyceraldehyde-3-phosphate dehydrogenase GapDH of Corynebacterium diphtheriae is redox-controlled by protein S-mycothiolation under oxidative stress.

Hillion M, Imber M, Pedre B, Bernhardt J, Saleh M, Loi VV, Maaß S, Becher D, Astolfi Rosado L, Adrian L, Weise C, Hell R, Wirtz M, Messens J, Antelmann H.

Sci Rep. 2017 Jul 10;7(1):5020. doi: 10.1038/s41598-017-05206-2.

46.

Ser/Thr protein kinase PrkC-mediated regulation of GroEL is critical for biofilm formation in Bacillus anthracis.

Arora G, Sajid A, Virmani R, Singhal A, Kumar CMS, Dhasmana N, Khanna T, Maji A, Misra R, Molle V, Becher D, Gerth U, Mande SC, Singh Y.

NPJ Biofilms Microbiomes. 2017 Mar 7;3:7. doi: 10.1038/s41522-017-0015-4. eCollection 2017.

47.

Signatures of cytoplasmic proteins in the exoproteome distinguish community- and hospital-associated methicillin-resistant Staphylococcus aureus USA300 lineages.

Mekonnen SA, Palma Medina LM, Glasner C, Tsompanidou E, de Jong A, Grasso S, Schaffer M, Mäder U, Larsen AR, Gumpert H, Westh H, Völker U, Otto A, Becher D, van Dijl JM.

Virulence. 2017 Aug 18;8(6):891-907. doi: 10.1080/21505594.2017.1325064. Epub 2017 May 5.

48.

Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress.

Hillion M, Bernhardt J, Busche T, Rossius M, Maaß S, Becher D, Rawat M, Wirtz M, Hell R, Rückert C, Kalinowski J, Antelmann H.

Sci Rep. 2017 Apr 26;7(1):1195. doi: 10.1038/s41598-017-01179-4.

49.

Bacillus pumilus KatX2 confers enhanced hydrogen peroxide resistance to a Bacillus subtilis PkatA::katX2 mutant strain.

Handtke S, Albrecht D, Zühlke D, Otto A, Becher D, Schweder T, Riedel K, Hecker M, Voigt B.

Microb Cell Fact. 2017 Apr 26;16(1):72. doi: 10.1186/s12934-017-0684-y.

50.

Insight into the evolution of microbial metabolism from the deep-branching bacterium, Thermovibrio ammonificans.

Giovannelli D, Sievert SM, Hügler M, Markert S, Becher D, Schweder T, Vetriani C.

Elife. 2017 Apr 24;6. pii: e18990. doi: 10.7554/eLife.18990.

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