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Items: 22

1.

Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines.

Kulkarni N, Alessandrì L, Panero R, Arigoni M, Olivero M, Ferrero G, Cordero F, Beccuti M, Calogero RA.

BMC Bioinformatics. 2018 Oct 15;19(Suppl 10):349. doi: 10.1186/s12859-018-2296-x.

2.

Luminal breast cancer-specific circular RNAs uncovered by a novel tool for data analysis.

Coscujuela Tarrero L, Ferrero G, Miano V, De Intinis C, Ricci L, Arigoni M, Riccardo F, Annaratone L, Castellano I, Calogero RA, Beccuti M, Cordero F, De Bortoli M.

Oncotarget. 2018 Feb 19;9(18):14580-14596. doi: 10.18632/oncotarget.24522. eCollection 2018 Mar 6.

3.

HashClone: a new tool to quantify the minimal residual disease in B-cell lymphoma from deep sequencing data.

Beccuti M, Genuardi E, Romano G, Monitillo L, Barbero D, Boccadoro M, Ladetto M, Calogero R, Ferrero S, Cordero F.

BMC Bioinformatics. 2017 Nov 23;18(1):516. doi: 10.1186/s12859-017-1923-2.

4.

SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer.

Beccuti M, Cordero F, Arigoni M, Panero R, Amparore EG, Donatelli S, Calogero RA.

Bioinformatics. 2018 Mar 1;34(5):871-872. doi: 10.1093/bioinformatics/btx674.

5.

Dissecting the genomic activity of a transcriptional regulator by the integrative analysis of omics data.

Ferrero G, Miano V, Beccuti M, Balbo G, De Bortoli M, Cordero F.

Sci Rep. 2017 Aug 17;7(1):8564. doi: 10.1038/s41598-017-08754-9.

6.

Peculiar Genes Selection: A new features selection method to improve classification performances in imbalanced data sets.

Martina F, Beccuti M, Balbo G, Cordero F.

PLoS One. 2017 Aug 14;12(8):e0177475. doi: 10.1371/journal.pone.0177475. eCollection 2017.

7.

A computational analysis of S-(2-succino)cysteine sites in proteins.

Miglio G, Sabatino AD, Veglia E, Giraudo MT, Beccuti M, Cordero F.

Biochim Biophys Acta. 2016 Feb;1864(2):211-8. doi: 10.1016/j.bbapap.2015.11.003. Epub 2015 Nov 14.

8.

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.

9.

Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis.

Carrara M, Lum J, Cordero F, Beccuti M, Poidinger M, Donatelli S, Calogero RA, Zolezzi F.

BMC Bioinformatics. 2015;16 Suppl 9:S2. doi: 10.1186/1471-2105-16-S9-S2. Epub 2015 Jun 1.

10.

A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression.

Fornari C, Balbo G, Halawani SM, Ba-Rukab O, Ahmad AR, Calogero RA, Cordero F, Beccuti M.

BMC Syst Biol. 2015;9 Suppl 3:S1. doi: 10.1186/1752-0509-9-S3-S1. Epub 2015 Jun 1.

11.

The molecular landscape of colorectal cancer cell lines unveils clinically actionable kinase targets.

Medico E, Russo M, Picco G, Cancelliere C, Valtorta E, Corti G, Buscarino M, Isella C, Lamba S, Martinoglio B, Veronese S, Siena S, Sartore-Bianchi A, Beccuti M, Mottolese M, Linnebacher M, Cordero F, Di Nicolantonio F, Bardelli A.

Nat Commun. 2015 Apr 30;6:7002. doi: 10.1038/ncomms8002.

12.

Chimera: a Bioconductor package for secondary analysis of fusion products.

Beccuti M, Carrara M, Cordero F, Lazzarato F, Donatelli S, Nadalin F, Policriti A, Calogero RA.

Bioinformatics. 2014 Dec 15;30(24):3556-7. doi: 10.1093/bioinformatics/btu662. Epub 2014 Oct 6.

13.

A mathematical-biological joint effort to investigate the tumor-initiating ability of Cancer Stem Cells.

Fornari C, Beccuti M, Lanzardo S, Conti L, Balbo G, Cavallo F, Calogero RA, Cordero F.

PLoS One. 2014 Sep 3;9(9):e106193. doi: 10.1371/journal.pone.0106193. eCollection 2014.

14.

State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?

Carrara M, Beccuti M, Cavallo F, Donatelli S, Lazzarato F, Cordero F, Calogero RA.

BMC Bioinformatics. 2013;14 Suppl 7:S2. doi: 10.1186/1471-2105-14-S7-S2. Epub 2013 Apr 22.

15.

Multi-level model for the investigation of oncoantigen-driven vaccination effect.

Cordero F, Beccuti M, Fornari C, Lanzardo S, Conti L, Cavallo F, Balbo G, Calogero R.

BMC Bioinformatics. 2013;14 Suppl 6:S11. doi: 10.1186/1471-2105-14-S6-S11. Epub 2013 Apr 17.

16.

Combinatorial pooling enables selective sequencing of the barley gene space.

Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Bhat PR, Wu Y, Ciardo G, Alsaihati B, Ma Y, Wanamaker S, Resnik J, Bozdag S, Luo MC, Close TJ.

PLoS Comput Biol. 2013 Apr;9(4):e1003010. doi: 10.1371/journal.pcbi.1003010. Epub 2013 Apr 4.

17.

State-of-the-art fusion-finder algorithms sensitivity and specificity.

Carrara M, Beccuti M, Lazzarato F, Cavallo F, Cordero F, Donatelli S, Calogero RA.

Biomed Res Int. 2013;2013:340620. doi: 10.1155/2013/340620. Epub 2013 Feb 17.

18.

Large disclosing the nature of computational tools for the analysis of next generation sequencing data.

Cordero F, Beccuti M, Donatelli S, Calogero RA.

Curr Top Med Chem. 2012;12(12):1320-30. Review.

PMID:
22690679
19.

Optimizing a massive parallel sequencing workflow for quantitative miRNA expression analysis.

Cordero F, Beccuti M, Arigoni M, Donatelli S, Calogero RA.

PLoS One. 2012;7(2):e31630. doi: 10.1371/journal.pone.0031630. Epub 2012 Feb 20.

20.

Bilateral posterior maxillary segmental osteotomy to rehabilitate edentulous mandibular area: case report.

Giannini D, Spinelli G, Ghilardi R, Beccuti ML, Raffaini M.

Minerva Stomatol. 2010 Oct;59(10):571-7. English, Italian.

PMID:
21048549
21.

[STRUCTURE OF THE DATURA ARBOREA L. LEAF].

BECCUTI M.

Gazz Med Ital. 1963 Dec;122:409-10. Italian. No abstract available.

PMID:
14117183
22.

[STRUCTURE OF THE LEAVES OF CINNAMOMUM CAMPHORA NEES AND EBERM].

BECCUTI M.

Gazz Med Ital. 1963 Nov;122:365-6. Italian. No abstract available.

PMID:
14116263

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