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Items: 43

1.

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.

Sevim V, Lee J, Egan R, Clum A, Hundley H, Lee J, Everroad RC, Detweiler AM, Bebout BM, Pett-Ridge J, Göker M, Murray AE, Lindemann SR, Klenk HP, O'Malley R, Zane M, Cheng JF, Copeland A, Daum C, Singer E, Woyke T.

Sci Data. 2019 Nov 26;6(1):285. doi: 10.1038/s41597-019-0287-z.

2.

Mechanisms of nitrogen attenuation from seawater by two microbial mats.

Coban O, Williams M, Bebout BM.

Water Res. 2018 Dec 15;147:373-381. doi: 10.1016/j.watres.2018.09.044. Epub 2018 Sep 27.

PMID:
30326399
3.

Morphological and isotopic changes of heterocystous cyanobacteria in response to N2 partial pressure.

Silverman SN, Kopf SH, Bebout BM, Gordon R, Som SM.

Geobiology. 2019 Jan;17(1):60-75. doi: 10.1111/gbi.12312. Epub 2018 Oct 5.

PMID:
30289610
4.

Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat.

Lee JZ, Everroad RC, Karaoz U, Detweiler AM, Pett-Ridge J, Weber PK, Prufert-Bebout L, Bebout BM.

PLoS One. 2018 Sep 11;13(9):e0202792. doi: 10.1371/journal.pone.0202792. eCollection 2018.

5.

Bacterial and archaeal profiling of hypersaline microbial mats and endoevaporites, under natural conditions and methanogenic microcosm experiments.

García-Maldonado JQ, Escobar-Zepeda A, Raggi L, Bebout BM, Sanchez-Flores A, López-Cortés A.

Extremophiles. 2018 Nov;22(6):903-916. doi: 10.1007/s00792-018-1047-2. Epub 2018 Aug 17.

PMID:
30120599
6.

Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate.

D'haeseleer P, Lee JZ, Prufert-Bebout L, Burow LC, Detweiler AM, Weber PK, Karaoz U, Brodie EL, Glavina Del Rio T, Tringe SG, Bebout BM, Pett-Ridge J.

Stand Genomic Sci. 2017 Nov 15;12:67. doi: 10.1186/s40793-017-0279-6. eCollection 2017.

7.

Enhanced performance of the microalga Chlorella sorokiniana remotely induced by the plant growth-promoting bacteria Azospirillum brasilense and Bacillus pumilus.

Amavizca E, Bashan Y, Ryu CM, Farag MA, Bebout BM, de-Bashan LE.

Sci Rep. 2017 Feb 1;7:41310. doi: 10.1038/srep41310.

8.

A radiative transfer modeling approach for accurate interpretation of PAM fluorometry experiments in suspended algal cultures.

Murphy TE, Prufert-Bebout LE, Bebout BM.

Biotechnol Prog. 2016 Nov;32(6):1601-1608. doi: 10.1002/btpr.2394. Epub 2016 Nov 14.

PMID:
27801554
9.

Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria.

Everroad RC, Stuart RK, Bebout BM, Detweiler AM, Lee JZ, Woebken D, Prufert-Bebout L, Pett-Ridge J.

Stand Genomic Sci. 2016 Aug 24;11(1):53. doi: 10.1186/s40793-016-0174-6. eCollection 2016.

10.

Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm.

Stuart RK, Mayali X, Boaro AA, Zemla A, Everroad RC, Nilson D, Weber PK, Lipton M, Bebout BM, Pett-Ridge J, Thelen MP.

MBio. 2016 Jun 28;7(3). pii: e00650-16. doi: 10.1128/mBio.00650-16.

11.

An Unusual Inverted Saline Microbial Mat Community in an Interdune Sabkha in the Rub' al Khali (the Empty Quarter), United Arab Emirates.

McKay CP, Rask JC, Detweiler AM, Bebout BM, Everroad RC, Lee JZ, Chanton JP, Mayer MH, Caraballo AA, Kapili B, Al-Awar M, Al-Farraj A.

PLoS One. 2016 Mar 16;11(3):e0150342. doi: 10.1371/journal.pone.0150342. eCollection 2016.

12.

Cyanobacterial reuse of extracellular organic carbon in microbial mats.

Stuart RK, Mayali X, Lee JZ, Craig Everroad R, Hwang M, Bebout BM, Weber PK, Pett-Ridge J, Thelen MP.

ISME J. 2016 May;10(5):1240-51. doi: 10.1038/ismej.2015.180. Epub 2015 Oct 23.

13.

Revisiting N₂ fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach.

Woebken D, Burow LC, Behnam F, Mayali X, Schintlmeister A, Fleming ED, Prufert-Bebout L, Singer SW, Cortés AL, Hoehler TM, Pett-Ridge J, Spormann AM, Wagner M, Weber PK, Bebout BM.

ISME J. 2015 Feb;9(2):485-96. doi: 10.1038/ismej.2014.144. Epub 2014 Oct 10.

14.

Characterization of methane flux from photosynthetic oxidation ponds in a wastewater treatment plant.

Detweiler AM, Bebout BM, Frisbee AE, Kelley CA, Chanton JP, Prufert-Bebout LE.

Water Sci Technol. 2014;70(6):980-9. doi: 10.2166/wst.2014.317.

PMID:
25259485
15.

Trimethylamine and Organic Matter Additions Reverse Substrate Limitation Effects on the δ13C Values of Methane Produced in Hypersaline Microbial Mats.

Kelley CA, Nicholson BE, Beaudoin CS, Detweiler AM, Bebout BM.

Appl Environ Microbiol. 2014 Dec;80(23):7316-23. doi: 10.1128/AEM.02641-14. Epub 2014 Sep 19.

16.

Evidence of novel phylogenetic lineages of methanogenic archaea from hypersaline microbial mats.

García-Maldonado JQ, Bebout BM, Everroad RC, López-Cortés A.

Microb Ecol. 2015 Jan;69(1):106-17. doi: 10.1007/s00248-014-0473-7. Epub 2014 Aug 10.

PMID:
25108574
17.

Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community.

Burow LC, Woebken D, Marshall IP, Singer SW, Pett-Ridge J, Prufert-Bebout L, Spormann AM, Bebout BM, Weber PK, Hoehler TM.

Geobiology. 2014 May;12(3):221-30. doi: 10.1111/gbi.12080.

PMID:
24730641
18.

Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats.

Lee JZ, Burow LC, Woebken D, Everroad RC, Kubo MD, Spormann AM, Weber PK, Pett-Ridge J, Bebout BM, Hoehler TM.

Front Microbiol. 2014 Feb 26;5:61. doi: 10.3389/fmicb.2014.00061. eCollection 2014.

19.

Multi-analyte biochip (MAB) based on all-solid-state ion-selective electrodes (ASSISE) for physiological research.

Wan Salim WW, Zeitchek MA, Hermann AC, Ricco AJ, Tan M, Selch F, Fleming E, Bebout BM, Bader MM, Ul Haque A, Porterfield DM.

J Vis Exp. 2013 Apr 18;(74). doi: 10.3791/50020.

20.

Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics.

Burow LC, Woebken D, Marshall IP, Lindquist EA, Bebout BM, Prufert-Bebout L, Hoehler TM, Tringe SG, Pett-Ridge J, Weber PK, Spormann AM, Singer SW.

ISME J. 2013 Apr;7(4):817-29. doi: 10.1038/ismej.2012.150. Epub 2012 Nov 29.

21.

Phylogenetic diversity of methyl-coenzyme M reductase (mcrA) gene and methanogenesis from trimethylamine in hypersaline environments.

García-Maldonado JQ, Bebout BM, Celis LB, López-Cortés A.

Int Microbiol. 2012 Mar;15(1):33-41.

22.

Substrate limitation for methanogenesis in hypersaline environments.

Kelley CA, Poole JA, Tazaz AM, Chanton JP, Bebout BM.

Astrobiology. 2012 Feb;12(2):89-97. doi: 10.1089/ast.2011.0703. Epub 2012 Jan 16.

PMID:
22248383
23.

Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis.

Woebken D, Burow LC, Prufert-Bebout L, Bebout BM, Hoehler TM, Pett-Ridge J, Spormann AM, Weber PK, Singer SW.

ISME J. 2012 Jul;6(7):1427-39. doi: 10.1038/ismej.2011.200. Epub 2012 Jan 12.

24.

Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay.

Burow LC, Woebken D, Bebout BM, McMurdie PJ, Singer SW, Pett-Ridge J, Prufert-Bebout L, Spormann AM, Weber PK, Hoehler TM.

ISME J. 2012 Apr;6(4):863-74. doi: 10.1038/ismej.2011.142. Epub 2011 Oct 20.

25.

Isotopic composition of methane and inferred methanogenic substrates along a salinity gradient in a hypersaline microbial mat system.

Potter EG, Bebout BM, Kelley CA.

Astrobiology. 2009 May;9(4):383-90. doi: 10.1089/ast.2008.0260.

PMID:
19400733
26.

Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat.

Kunin V, Raes J, Harris JK, Spear JR, Walker JJ, Ivanova N, von Mering C, Bebout BM, Pace NR, Bork P, Hugenholtz P.

Mol Syst Biol. 2008;4:198. doi: 10.1038/msb.2008.35. Epub 2008 Jun 3.

27.

Shifts in methanogen community structure and function associated with long-term manipulation of sulfate and salinity in a hypersaline microbial mat.

Smith JM, Green SJ, Kelley CA, Prufert-Bebout L, Bebout BM.

Environ Microbiol. 2008 Feb;10(2):386-94. doi: 10.1111/j.1462-2920.2007.01459.x. Epub 2007 Dec 19.

PMID:
18177370
28.

High rates of sulfate reduction in a low-sulfate hot spring microbial mat are driven by a low level of diversity of sulfate-respiring microorganisms.

Dillon JG, Fishbain S, Miller SR, Bebout BM, Habicht KS, Webb SM, Stahl DA.

Appl Environ Microbiol. 2007 Aug;73(16):5218-26. Epub 2007 Jun 15.

29.

Application of a nifH oligonucleotide microarray for profiling diversity of N2-fixing microorganisms in marine microbial mats.

Moisander PH, Shiue L, Steward GF, Jenkins BD, Bebout BM, Zehr JP.

Environ Microbiol. 2006 Oct;8(10):1721-35.

PMID:
16958753
30.

Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat.

Ley RE, Harris JK, Wilcox J, Spear JR, Miller SR, Bebout BM, Maresca JA, Bryant DA, Sogin ML, Pace NR.

Appl Environ Microbiol. 2006 May;72(5):3685-95.

31.

Mathematical simulation of the diel O, S, and C biogeochemistry of a hypersaline microbial mat.

Decker KL, Potter CS, Bebout BM, Marais DJ, Carpenter S, Discipulo M, Hoehler TM, Miller SR, Thamdrup B, Turk KA, Visscher PT.

FEMS Microbiol Ecol. 2005 May 1;52(3):377-95. Epub 2005 Jan 12.

32.
33.

Comparison of diazotroph community structure in Lyngbya sp. and Microcoleus chthonoplastes dominated microbial mats from Guerrero Negro, Baja, Mexico.

Omoregie EO, Crumbliss LL, Bebout BM, Zehr JP.

FEMS Microbiol Ecol. 2004 Mar 1;47(3):305-8. doi: 10.1016/S0168-6496(03)00301-5.

34.
35.

Long-term manipulations of intact microbial mat communities in a greenhouse collaboratory: simulating earth's present and past field environments.

Bebout BM, Carpenter SP, Des Marais DJ, Discipulo M, Embaye T, Garcia-Pichel F, Hoehler TM, Hogan M, Jahnke LL, Keller RM, Miller SR, Prufert-Bebout LE, Raleigh C, Rothrock M, Turk K.

Astrobiology. 2002 Winter;2(4):383-402.

PMID:
12593778
36.

Comparative ecology of H2 cycling in sedimentary and phototrophic ecosystems.

Hoehler TM, Albert DB, Alperin MJ, Bebout BM, Martens CS, Des Marais DJ.

Antonie Van Leeuwenhoek. 2002 Aug;81(1-4):575-85. Review.

PMID:
12448753
37.

The role of microbial mats in the production of reduced gases on the early Earth.

Hoehler TM, Bebout BM, Des Marais DJ.

Nature. 2001 Jul 19;412(6844):324-7.

PMID:
11460161
38.

The role of microbes in accretion, lamination and early lithification of modern marine stromatolites.

Reid RP, Visscher PT, Decho AW, Stolz JF, Bebout BM, Dupraz C, Macintyre IG, Paerl HW, Pinckney JL, Prufert-Bebout L, Steppe TF, DesMarais DJ.

Nature. 2000 Aug 31;406(6799):989-92.

PMID:
10984051
39.

UV B-Induced Vertical Migrations of Cyanobacteria in a Microbial Mat.

Bebout BM, Garcia-Pichel F.

Appl Environ Microbiol. 1995 Dec;61(12):4215-22.

41.

Microscale characterization of dissolved organic matter production and uptake in marine microbial mat communities.

Paerl HW, Bebout BM, Joye SB, Des Marais DJ.

Limnol Oceanogr. 1993;38(6):1150-61.

PMID:
11539296
42.

Direct measurement of o2-depleted microzones in marine oscillatoria: relation to n2 fixation.

Paerl HW, Bebout BM.

Science. 1988 Jul 22;241(4864):442-5.

PMID:
17792609
43.

Diel interactions of oxygenic photosynthesis and n(2) fixation (acetylene reduction) in a marine microbial mat community.

Bebout BM, Paerl HW, Crocker KM, Prufert LE.

Appl Environ Microbiol. 1987 Oct;53(10):2353-62.

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