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Items: 32

1.

Technological advances in maize breeding: past, present and future.

Andorf C, Beavis WD, Hufford M, Smith S, Suza WP, Wang K, Woodhouse M, Yu J, Lübberstedt T.

Theor Appl Genet. 2019 Mar;132(3):817-849. doi: 10.1007/s00122-019-03306-3. Epub 2019 Feb 23. Review.

PMID:
30798332
2.

GWASpro: a high-performance genome-wide association analysis server.

Kim B, Dai X, Zhang W, Zhuang Z, Sanchez DL, Lübberstedt T, Kang Y, Udvardi MK, Beavis WD, Xu S, Zhao PX.

Bioinformatics. 2019 Jul 15;35(14):2512-2514. doi: 10.1093/bioinformatics/bty989.

3.

Genetic Architecture of Soybean Yield and Agronomic Traits.

Diers BW, Specht J, Rainey KM, Cregan P, Song Q, Ramasubramanian V, Graef G, Nelson R, Schapaugh W, Wang D, Shannon G, McHale L, Kantartzi SK, Xavier A, Mian R, Stupar RM, Michno JM, An YC, Goettel W, Ward R, Fox C, Lipka AE, Hyten D, Cary T, Beavis WD.

G3 (Bethesda). 2018 Oct 3;8(10):3367-3375. doi: 10.1534/g3.118.200332.

4.

Genome-Wide Analysis of Grain Yield Stability and Environmental Interactions in a Multiparental Soybean Population.

Xavier A, Jarquin D, Howard R, Ramasubramanian V, Specht JE, Graef GL, Beavis WD, Diers BW, Song Q, Cregan PB, Nelson R, Mian R, Shannon JG, McHale L, Wang D, Schapaugh W, Lorenz AJ, Xu S, Muir WM, Rainey KM.

G3 (Bethesda). 2018 Feb 2;8(2):519-529. doi: 10.1534/g3.117.300300.

5.

Genetic Characterization of the Soybean Nested Association Mapping Population.

Song Q, Yan L, Quigley C, Jordan BD, Fickus E, Schroeder S, Song BH, Charles An YQ, Hyten D, Nelson R, Rainey K, Beavis WD, Specht J, Diers B, Cregan P.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2016.10.0109.

6.

Application of Response Surface Methods To Determine Conditions for Optimal Genomic Prediction.

Howard R, Carriquiry AL, Beavis WD.

G3 (Bethesda). 2017 Sep 7;7(9):3103-3113. doi: 10.1534/g3.117.044453.

7.

Systematic design for trait introgression projects.

Cameron JN, Han Y, Wang L, Beavis WD.

Theor Appl Genet. 2017 Oct;130(10):1993-2004. doi: 10.1007/s00122-017-2938-9. Epub 2017 Jun 24.

8.

Leveraging genomic prediction to scan germplasm collection for crop improvement.

de Azevedo Peixoto L, Moellers TC, Zhang J, Lorenz AJ, Bhering LL, Beavis WD, Singh AK.

PLoS One. 2017 Jun 9;12(6):e0179191. doi: 10.1371/journal.pone.0179191. eCollection 2017.

9.

Numericware i: Identical by State Matrix Calculator.

Kim B, Beavis WD.

Evol Bioinform Online. 2017 Mar 10;13:1176934316688663. doi: 10.1177/1176934316688663. eCollection 2017. Review.

10.

The Predicted Cross Value for Genetic Introgression of Multiple Alleles.

Han Y, Cameron JN, Wang L, Beavis WD.

Genetics. 2017 Apr;205(4):1409-1423. doi: 10.1534/genetics.116.197095. Epub 2017 Jan 25.

11.

Numericware N: Numerator Relationship Matrix Calculator.

Kim B, Beavis WD, Léon J.

J Hered. 2016;107(7):686-690. Epub 2016 Oct 11.

PMID:
27729447
12.

Distribution and evolution of cotton fiber development genes in the fibreless Gossypium raimondii genome.

Xu Z, Yu J, Kohel RJ, Percy RG, Beavis WD, Main D, Yu JZ.

Genomics. 2015 Jul;106(1):61-9. doi: 10.1016/j.ygeno.2015.03.002. Epub 2015 Mar 18.

13.

Parametric and nonparametric statistical methods for genomic selection of traits with additive and epistatic genetic architectures.

Howard R, Carriquiry AL, Beavis WD.

G3 (Bethesda). 2014 Apr 11;4(6):1027-46. doi: 10.1534/g3.114.010298.

14.

Family-based association mapping in crop species.

Guo B, Wang D, Guo Z, Beavis WD.

Theor Appl Genet. 2013 Jun;126(6):1419-30. doi: 10.1007/s00122-013-2100-2. Epub 2013 Apr 26. Review.

PMID:
23620001
15.

Genome-wide association study for oat (Avena sativa L.) beta-glucan concentration using germplasm of worldwide origin.

Newell MA, Asoro FG, Scott MP, White PJ, Beavis WD, Jannink JL.

Theor Appl Genet. 2012 Dec;125(8):1687-96. doi: 10.1007/s00122-012-1945-0. Epub 2012 Aug 3.

PMID:
22865125
16.

In silico genotyping of the maize nested association mapping population.

Guo B, Beavis WD.

Mol Breed. 2011 Jan;27(1):107-113. Epub 2010 Sep 26.

17.

Nested association mapping for identification of functional markers.

Guo B, Sleper DA, Beavis WD.

Genetics. 2010 Sep;186(1):373-83. doi: 10.1534/genetics.110.115782. Epub 2010 Jun 15.

18.

Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum.

Mudge J, Miller NA, Khrebtukova I, Lindquist IE, May GD, Huntley JJ, Luo S, Zhang L, van Velkinburgh JC, Farmer AD, Lewis S, Beavis WD, Schilkey FD, Virk SM, Black CF, Myers MK, Mader LC, Langley RJ, Utsey JP, Kim RW, Roberts RC, Khalsa SK, Garcia M, Ambriz-Griffith V, Harlan R, Czika W, Martin S, Wolfinger RD, Perrone-Bizzozero NI, Schroth GP, Kingsmore SF.

PLoS One. 2008;3(11):e3625. doi: 10.1371/journal.pone.0003625. Epub 2008 Nov 5.

19.

Identification of diagnostic biomarkers for infection in premature neonates.

Kingsmore SF, Kennedy N, Halliday HL, Van Velkinburgh JC, Zhong S, Gabriel V, Grant J, Beavis WD, Tchernev VT, Perlee L, Lejnine S, Grimwade B, Sorette M, Edgar JD.

Mol Cell Proteomics. 2008 Oct;7(10):1863-75. doi: 10.1074/mcp.M800175-MCP200. Epub 2008 Jul 13.

20.

Leveraging model legume information to find candidate genes for soybean sudden death syndrome using the legume information system.

Gonzales MD, Gajendran K, Farmer AD, Archuleta E, Beavis WD.

Methods Mol Biol. 2007;406:245-59.

PMID:
18287696
21.

Genome-wide association studies: progress and potential for drug discovery and development.

Kingsmore SF, Lindquist IE, Mudge J, Gessler DD, Beavis WD.

Nat Rev Drug Discov. 2008 Mar;7(3):221-30. doi: 10.1038/nrd2519. Review.

22.

Genome-wide association studies: progress in identifying genetic biomarkers in common, complex diseases.

Kingsmore SF, Lindquist IE, Mudge J, Beavis WD.

Biomark Insights. 2007 Aug 8;2:283-92.

23.

Adding confidence to gene expression clustering.

Munneke B, Schlauch KA, Simonsen KL, Beavis WD, Doerge RW.

Genetics. 2005 Aug;170(4):2003-11. Epub 2005 Jun 8.

24.

Legumes as a model plant family. Genomics for food and feed report of the Cross-Legume Advances Through Genomics Conference.

Gepts P, Beavis WD, Brummer EC, Shoemaker RC, Stalker HT, Weeden NF, Young ND.

Plant Physiol. 2005 Apr;137(4):1228-35. No abstract available.

25.

The Legume Information System (LIS): an integrated information resource for comparative legume biology.

Gonzales MD, Archuleta E, Farmer A, Gajendran K, Grant D, Shoemaker R, Beavis WD, Waugh ME.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D660-5.

26.

The Collaborative Cross, a community resource for the genetic analysis of complex traits.

Churchill GA, Airey DC, Allayee H, Angel JM, Attie AD, Beatty J, Beavis WD, Belknap JK, Bennett B, Berrettini W, Bleich A, Bogue M, Broman KW, Buck KJ, Buckler E, Burmeister M, Chesler EJ, Cheverud JM, Clapcote S, Cook MN, Cox RD, Crabbe JC, Crusio WE, Darvasi A, Deschepper CF, Doerge RW, Farber CR, Forejt J, Gaile D, Garlow SJ, Geiger H, Gershenfeld H, Gordon T, Gu J, Gu W, de Haan G, Hayes NL, Heller C, Himmelbauer H, Hitzemann R, Hunter K, Hsu HC, Iraqi FA, Ivandic B, Jacob HJ, Jansen RC, Jepsen KJ, Johnson DK, Johnson TE, Kempermann G, Kendziorski C, Kotb M, Kooy RF, Llamas B, Lammert F, Lassalle JM, Lowenstein PR, Lu L, Lusis A, Manly KF, Marcucio R, Matthews D, Medrano JF, Miller DR, Mittleman G, Mock BA, Mogil JS, Montagutelli X, Morahan G, Morris DG, Mott R, Nadeau JH, Nagase H, Nowakowski RS, O'Hara BF, Osadchuk AV, Page GP, Paigen B, Paigen K, Palmer AA, Pan HJ, Peltonen-Palotie L, Peirce J, Pomp D, Pravenec M, Prows DR, Qi Z, Reeves RH, Roder J, Rosen GD, Schadt EE, Schalkwyk LC, Seltzer Z, Shimomura K, Shou S, Sillanpää MJ, Siracusa LD, Snoeck HW, Spearow JL, Svenson K, Tarantino LM, Threadgill D, Toth LA, Valdar W, de Villena FP, Warden C, Whatley S, Williams RW, Wiltshire T, Yi N, Zhang D, Zhang M, Zou F; Complex Trait Consortium.

Nat Genet. 2004 Nov;36(11):1133-7.

PMID:
15514660
27.

Rate and pattern of mutation at microsatellite loci in maize.

Vigouroux Y, Jaqueth JS, Matsuoka Y, Smith OS, Beavis WD, Smith JS, Doebley J.

Mol Biol Evol. 2002 Aug;19(8):1251-60.

PMID:
12140237
28.

Expanding the genetic map of maize with the intermated B73 x Mo17 (IBM) population.

Lee M, Sharopova N, Beavis WD, Grant D, Katt M, Blair D, Hallauer A.

Plant Mol Biol. 2002 Mar-Apr;48(5-6):453-61.

PMID:
11999829
29.

Genetic mapping of soybean cyst nematode race-3 resistance loci in the soybean PI 437.654.

Webb DM, Baltazar BM, Rao-Arelli AP, Schupp J, Clayton K, Keim P, Beavis WD.

Theor Appl Genet. 1995 Sep;91(4):574-81. doi: 10.1007/BF00223282.

PMID:
24169883
30.

Quantitative trait loci for plant height in four maize populations and their associations with qualitative genetic loci.

Beavis WD, Grant D, Albertsen M, Fincher R.

Theor Appl Genet. 1991 Dec;83(2):141-5. doi: 10.1007/BF00226242.

PMID:
24202349
31.

A linkage map based on information from four F2 populations of maize (Zea mays L.).

Beavis WD, Grant D.

Theor Appl Genet. 1991 Oct;82(5):636-44. doi: 10.1007/BF00226803.

PMID:
24213346
32.

A theoretical model for quantitatively inherited traits influenced by nuclear-cytoplasmic interactions.

Beavis WD, Pollak E, Frey KJ.

Theor Appl Genet. 1987 Sep;74(5):571-8. doi: 10.1007/BF00288854.

PMID:
24240211

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