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Items: 14

1.

Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages.

Beale MA, Marks M, Sahi SK, Tantalo LC, Nori AV, French P, Lukehart SA, Marra CM, Thomson NR.

Nat Commun. 2019 Jul 22;10(1):3255. doi: 10.1038/s41467-019-11216-7.

2.

Identification of novel adenovirus genotype 90 in children from Bangladesh.

Houldcroft CJ, Beale MA, Sayeed MA, Qadri F, Dougan G, Mutreja A.

Microb Genom. 2018 Oct;4(10). doi: 10.1099/mgen.0.000221. Epub 2018 Sep 24.

3.

On the effective depth of viral sequence data.

Illingworth CJR, Roy S, Beale MA, Tutill H, Williams R, Breuer J.

Virus Evol. 2017 Nov 14;3(2):vex030. doi: 10.1093/ve/vex030. eCollection 2017 Jul.

4.

Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level.

Rhodes J, Desjardins CA, Sykes SM, Beale MA, Vanhove M, Sakthikumar S, Chen Y, Gujja S, Saif S, Chowdhary A, Lawson DJ, Ponzio V, Colombo AL, Meyer W, Engelthaler DM, Hagen F, Illnait-Zaragozi MT, Alanio A, Vreulink JM, Heitman J, Perfect JR, Litvintseva AP, Bicanic T, Harrison TS, Fisher MC, Cuomo CA.

Genetics. 2017 Sep;207(1):327-346. doi: 10.1534/genetics.117.203836. Epub 2017 Jul 5.

5.

A Population Genomics Approach to Assessing the Genetic Basis of Within-Host Microevolution Underlying Recurrent Cryptococcal Meningitis Infection.

Rhodes J, Beale MA, Vanhove M, Jarvis JN, Kannambath S, Simpson JA, Ryan A, Meintjes G, Harrison TS, Fisher MC, Bicanic T.

G3 (Bethesda). 2017 Apr 3;7(4):1165-1176. doi: 10.1534/g3.116.037499.

6.

Clinical and biological insights from viral genome sequencing.

Houldcroft CJ, Beale MA, Breuer J.

Nat Rev Microbiol. 2017 Mar;15(3):183-192. doi: 10.1038/nrmicro.2016.182. Epub 2017 Jan 16. Review.

PMID:
28090077
7.

Genomic epidemiology of Cryptococcus yeasts identifies adaptation to environmental niches underpinning infection across an African HIV/AIDS cohort.

Vanhove M, Beale MA, Rhodes J, Chanda D, Lakhi S, Kwenda G, Molloy S, Karunaharan N, Stone N, Harrison TS, Bicanic T, Fisher MC.

Mol Ecol. 2017 Apr;26(7):1991-2005. doi: 10.1111/mec.13891. Epub 2016 Nov 8.

8.

Erratum for Abdolrasouli et al., Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing.

Abdolrasouli A, Rhodes J, Beale MA, Hagen F, Rogers TR, Chowdhary A, Meis JF, Armstrong-James D, Fisher MC.

MBio. 2015 Jul 14;6(4):e00939. doi: 10.1128/mBio.00939-15. No abstract available.

9.

Genotypic Diversity Is Associated with Clinical Outcome and Phenotype in Cryptococcal Meningitis across Southern Africa.

Beale MA, Sabiiti W, Robertson EJ, Fuentes-Cabrejo KM, O'Hanlon SJ, Jarvis JN, Loyse A, Meintjes G, Harrison TS, May RC, Fisher MC, Bicanic T.

PLoS Negl Trop Dis. 2015 Jun 25;9(6):e0003847. doi: 10.1371/journal.pntd.0003847. eCollection 2015.

10.

Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing.

Abdolrasouli A, Rhodes J, Beale MA, Hagen F, Rogers TR, Chowdhary A, Meis JF, Armstrong-James D, Fisher MC.

MBio. 2015 Jun 2;6(3):e00536. doi: 10.1128/mBio.00536-15. Erratum in: MBio. 2015;6(4):e00939.

11.

Illuminating choices for library prep: a comparison of library preparation methods for whole genome sequencing of Cryptococcus neoformans using Illumina HiSeq.

Rhodes J, Beale MA, Fisher MC.

PLoS One. 2014 Nov 19;9(11):e113501. doi: 10.1371/journal.pone.0113501. eCollection 2014.

12.

Efficient phagocytosis and laccase activity affect the outcome of HIV-associated cryptococcosis.

Sabiiti W, Robertson E, Beale MA, Johnston SA, Brouwer AE, Loyse A, Jarvis JN, Gilbert AS, Fisher MC, Harrison TS, May RC, Bicanic T.

J Clin Invest. 2014 May;124(5):2000-8. doi: 10.1172/JCI72950. Epub 2014 Apr 17.

13.

Is there evidence of recent hepatitis E virus infection in English and North Welsh blood donors?

Beale MA, Tettmar K, Szypulska R, Tedder RS, Ijaz S.

Vox Sang. 2011 Apr;100(3):340-2. doi: 10.1111/j.1423-0410.2010.01412.x. Epub 2010 Sep 24.

PMID:
21392024
14.

The genetic backbone modulates the phenotype of hepatitis B surface antigen mutants.

Beale MA, Ijaz S, Tedder RS.

J Gen Virol. 2010 Jan;91(Pt 1):68-73. doi: 10.1099/vir.0.013078-0. Epub 2009 Sep 16.

PMID:
19759242

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