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Items: 1 to 50 of 73

1.

Comparison of Highly and Weakly Virulent Dickeya solani Strains, With a View on the Pangenome and Panregulon of This Species.

Golanowska M, Potrykus M, Motyka-Pomagruk A, Kabza M, Bacci G, Galardini M, Bazzicalupo M, Makalowska I, Smalla K, Mengoni A, Hugouvieux-Cotte-Pattat N, Lojkowska E.

Front Microbiol. 2018 Aug 31;9:1940. doi: 10.3389/fmicb.2018.01940. eCollection 2018.

2.

Creation and Characterization of a Genomically Hybrid Strain in the Nitrogen-Fixing Symbiotic Bacterium Sinorhizobium meliloti.

Checcucci A, diCenzo GC, Ghini V, Bazzicalupo M, Becker A, Decorosi F, Döhlemann J, Fagorzi C, Finan TM, Fondi M, Luchinat C, Turano P, Vignolini T, Viti C, Mengoni A.

ACS Synth Biol. 2018 Oct 19;7(10):2365-2378. doi: 10.1021/acssynbio.8b00158. Epub 2018 Oct 3.

PMID:
30223644
3.

Trade, Diplomacy, and Warfare: The Quest for Elite Rhizobia Inoculant Strains.

Checcucci A, DiCenzo GC, Bazzicalupo M, Mengoni A.

Front Microbiol. 2017 Nov 9;8:2207. doi: 10.3389/fmicb.2017.02207. eCollection 2017.

4.

Role and Regulation of ACC Deaminase Gene in Sinorhizobium meliloti: Is It a Symbiotic, Rhizospheric or Endophytic Gene?

Checcucci A, Azzarello E, Bazzicalupo M, De Carlo A, Emiliani G, Mancuso S, Spini G, Viti C, Mengoni A.

Front Genet. 2017 Jan 30;8:6. doi: 10.3389/fgene.2017.00006. eCollection 2017.

5.

Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti.

diCenzo GC, Checcucci A, Bazzicalupo M, Mengoni A, Viti C, Dziewit L, Finan TM, Galardini M, Fondi M.

Nat Commun. 2016 Jul 22;7:12219. doi: 10.1038/ncomms12219.

6.

Mixed Nodule Infection in Sinorhizobium meliloti-Medicago sativa Symbiosis Suggest the Presence of Cheating Behavior.

Checcucci A, Azzarello E, Bazzicalupo M, Galardini M, Lagomarsino A, Mancuso S, Marti L, Marzano MC, Mocali S, Squartini A, Zanardo M, Mengoni A.

Front Plant Sci. 2016 Jun 13;7:835. doi: 10.3389/fpls.2016.00835. eCollection 2016.

7.

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome.

Galardini M, Brilli M, Spini G, Rossi M, Roncaglia B, Bani A, Chiancianesi M, Moretto M, Engelen K, Bacci G, Pini F, Biondi EG, Bazzicalupo M, Mengoni A.

PLoS Comput Biol. 2015 Sep 4;11(9):e1004478. doi: 10.1371/journal.pcbi.1004478. eCollection 2015 Sep.

8.

Cell Cycle Control by the Master Regulator CtrA in Sinorhizobium meliloti.

Pini F, De Nisco NJ, Ferri L, Penterman J, Fioravanti A, Brilli M, Mengoni A, Bazzicalupo M, Viollier PH, Walker GC, Biondi EG.

PLoS Genet. 2015 May 15;11(5):e1005232. doi: 10.1371/journal.pgen.1005232. eCollection 2015 May.

9.

Draft Genome Sequence of a Highly Virulent Strain of the Plant Pathogen Dickeya solani, IFB0099.

Golanowska M, Galardini M, Bazzicalupo M, Hugouvieux-Cotte-Pattat N, Mengoni A, Potrykus M, Slawiak M, Lojkowska E.

Genome Announc. 2015 Mar 19;3(2). pii: e00109-15. doi: 10.1128/genomeA.00109-15.

10.

Evaluation of the Performances of Ribosomal Database Project (RDP) Classifier for Taxonomic Assignment of 16S rRNA Metabarcoding Sequences Generated from Illumina-Solexa NGS.

Bacci G, Bani A, Bazzicalupo M, Ceccherini MT, Galardini M, Nannipieri P, Pietramellara G, Mengoni A.

J Genomics. 2015 Feb 1;3:36-9. doi: 10.7150/jgen.9204. eCollection 2015.

11.

Exploring the dynamics of bacterial community composition in soil: the pan-bacteriome approach.

Bacci G, Ceccherini MT, Bani A, Bazzicalupo M, Castaldini M, Galardini M, Giovannetti L, Mocali S, Pastorelli R, Pantani OL, Arfaioli P, Pietramellara G, Viti C, Nannipieri P, Mengoni A.

Antonie Van Leeuwenhoek. 2015 Mar;107(3):785-97. doi: 10.1007/s10482-014-0372-4. Epub 2015 Jan 7.

PMID:
25563635
12.

Mapping contigs using CONTIGuator.

Galardini M, Mengoni A, Bazzicalupo M.

Methods Mol Biol. 2015;1231:163-76. doi: 10.1007/978-1-4939-1720-4_11.

PMID:
25343865
13.

Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58.

Galardini M, Bazzicalupo M, Biondi E, Brambilla E, Brilli M, Bruce D, Chain P, Chen A, Daligault H, Davenport KW, Deshpande S, Detter JC, Goodwin LA, Han C, Han J, Huntemann M, Ivanova N, Klenk HP, Kyrpides NC, Markowitz V, Mavrommatis K, Mocali S, Nolan M, Pagani I, Pati A, Pini F, Pitluck S, Spini G, Szeto E, Teshima H, Woyke T, Mengoni A.

Stand Genomic Sci. 2013 Dec 15;9(2):325-33. doi: 10.4056/sigs.3797438. eCollection 2013 Dec 20.

14.

Biogeography of Sinorhizobium meliloti nodulating alfalfa in different Croatian regions.

Donnarumma F, Bazzicalupo M, Blažinkov M, Mengoni A, Sikora S, Babić KH.

Res Microbiol. 2014 Sep;165(7):508-16. doi: 10.1016/j.resmic.2014.06.001. Epub 2014 Jun 21.

PMID:
24959651
15.

DuctApe: a suite for the analysis and correlation of genomic and OmniLog™ Phenotype Microarray data.

Galardini M, Mengoni A, Biondi EG, Semeraro R, Florio A, Bazzicalupo M, Benedetti A, Mocali S.

Genomics. 2014 Jan;103(1):1-10. doi: 10.1016/j.ygeno.2013.11.005. Epub 2013 Dec 4.

16.

StreamingTrim 1.0: a Java software for dynamic trimming of 16S rRNA sequence data from metagenetic studies.

Bacci G, Bazzicalupo M, Benedetti A, Mengoni A.

Mol Ecol Resour. 2014 Mar;14(2):426-34. doi: 10.1111/1755-0998.12187. Epub 2013 Nov 16.

PMID:
24128146
17.

The DivJ, CbrA and PleC system controls DivK phosphorylation and symbiosis in Sinorhizobium meliloti.

Pini F, Frage B, Ferri L, De Nisco NJ, Mohapatra SS, Taddei L, Fioravanti A, Dewitte F, Galardini M, Brilli M, Villeret V, Bazzicalupo M, Mengoni A, Walker GC, Becker A, Biondi EG.

Mol Microbiol. 2013 Oct;90(1):54-71. doi: 10.1111/mmi.12347. Epub 2013 Aug 19.

18.

Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti.

Galardini M, Pini F, Bazzicalupo M, Biondi EG, Mengoni A.

Genome Biol Evol. 2013;5(3):542-58. doi: 10.1093/gbe/evt027.

19.

Exploring the plant-associated bacterial communities in Medicago sativa L.

Pini F, Frascella A, Santopolo L, Bazzicalupo M, Biondi EG, Scotti C, Mengoni A.

BMC Microbiol. 2012 May 20;12:78. doi: 10.1186/1471-2180-12-78.

20.

Spread of the group II intron RmInt1 and its insertion sequence target sites in the plant endosymbiont Sinorhizobium meliloti.

Biondi EG, Toro N, Bazzicalupo M, Martínez-Abarca F.

Mob Genet Elements. 2011 May;1(1):2-7.

21.

CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes.

Galardini M, Biondi EG, Bazzicalupo M, Mengoni A.

Source Code Biol Med. 2011 Jun 21;6:11. doi: 10.1186/1751-0473-6-11.

22.

Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti.

Galardini M, Mengoni A, Brilli M, Pini F, Fioravanti A, Lucas S, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Land M, Hauser L, Woyke T, Mikhailova N, Ivanova N, Daligault H, Bruce D, Detter C, Tapia R, Han C, Teshima H, Mocali S, Bazzicalupo M, Biondi EG.

BMC Genomics. 2011 May 12;12:235. doi: 10.1186/1471-2164-12-235.

23.

Plant-bacteria association and symbiosis: are there common genomic traits in alphaproteobacteria?

Pini F, Galardini M, Bazzicalupo M, Mengoni A.

Genes (Basel). 2011 Nov 29;2(4):1017-32. doi: 10.3390/genes2041017.

24.

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis.

Brilli M, Fondi M, Fani R, Mengoni A, Ferri L, Bazzicalupo M, Biondi EG.

BMC Syst Biol. 2010 Apr 28;4:52. doi: 10.1186/1752-0509-4-52.

25.

Plasmid electroporation of Sinorhizobium strains: The role of the restriction gene hsdR in type strain Rm1021.

Ferri L, Gori A, Biondi EG, Mengoni A, Bazzicalupo M.

Plasmid. 2010 May;63(3):128-35. doi: 10.1016/j.plasmid.2010.01.001. Epub 2010 Jan 22.

PMID:
20097223
26.

Development of a cultivation-independent approach for the study of genetic diversity of Sinorhizobium meliloti populations.

Trabelsi D, Pini F, Bazzicalupo M, Biondi EG, Aouani ME, Mengoni A.

Mol Ecol Resour. 2010 Jan;10(1):170-2. doi: 10.1111/j.1755-0998.2009.02697.x. Epub 2009 Apr 7.

PMID:
21565004
27.

Metabolic capacity of Sinorhizobium (Ensifer) meliloti strains as determined by phenotype MicroArray analysis.

Biondi EG, Tatti E, Comparini D, Giuntini E, Mocali S, Giovannetti L, Bazzicalupo M, Mengoni A, Viti C.

Appl Environ Microbiol. 2009 Aug;75(16):5396-404. doi: 10.1128/AEM.00196-09. Epub 2009 Jun 26.

28.

Plant-by-plant variations of bacterial communities associated with leaves of the nickel hyperaccumulator Alyssum bertolonii Desv.

Mengoni A, Pini F, Huang LN, Shu WS, Bazzicalupo M.

Microb Ecol. 2009 Oct;58(3):660-7. doi: 10.1007/s00248-009-9537-5. Epub 2009 May 29.

PMID:
19479304
29.

Development of real-time PCR assay for detection and quantification of Sinorhizobium meliloti in soil and plant tissue.

Trabelsi D, Pini F, Aouani ME, Bazzicalupo M, Mengoni A.

Lett Appl Microbiol. 2009 Mar;48(3):355-61. doi: 10.1111/j.1472-765X.2008.02532.x. Epub 2009 Jan 16.

30.

Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network.

Brilli M, Mengoni A, Fondi M, Bazzicalupo M, Liò P, Fani R.

BMC Bioinformatics. 2008 Dec 21;9:551. doi: 10.1186/1471-2105-9-551.

31.

Diversity of Sinorhizobium strains nodulating Medicago sativa from different Iranian regions.

Talebi MB, Bahar M, Saeidi G, Mengoni A, Bazzicalupo M.

FEMS Microbiol Lett. 2008 Nov;288(1):40-6. doi: 10.1111/j.1574-6968.2008.01329.x.

32.

Effects of rhizodeposition of non-transgenic and transplastomic tobaccos on the soil bacterial community.

Brusetti L, Rizzi A, Abruzzese A, Sacchi GA, Ragg E, Bazzicalupo M, Sorlini C, Daffonchio D.

Environ Biosafety Res. 2008 Jan-Mar;7(1):11-24. doi: 10.1051/ebr:2008002. Epub 2008 Apr 3.

33.

Strategy for in situ detection of natural transformation-based horizontal gene transfer events.

Rizzi A, Pontiroli A, Brusetti L, Borin S, Sorlini C, Abruzzese A, Sacchi GA, Vogel TM, Simonet P, Bazzicalupo M, Nielsen KM, Monier JM, Daffonchio D.

Appl Environ Microbiol. 2008 Feb;74(4):1250-4. doi: 10.1128/AEM.02185-07. Epub 2007 Dec 28.

34.

Isolation and characterization of endophytic bacteria from the nickel hyperaccumulator plant Alyssum bertolonii.

Barzanti R, Ozino F, Bazzicalupo M, Gabbrielli R, Galardi F, Gonnelli C, Mengoni A.

Microb Ecol. 2007 Feb;53(2):306-16.

PMID:
17264998
35.

Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains.

Giuntini E, Mengoni A, De Filippo C, Cavalieri D, Aubin-Horth N, Landry CR, Becker A, Bazzicalupo M.

BMC Genomics. 2005 Nov 10;6:158.

36.

Comparison of 16S rRNA and 16S rDNA T-RFLP approaches to study bacterial communities in soil microcosms treated with chromate as perturbing agent.

Mengoni A, Tatti E, Decorosi F, Viti C, Bazzicalupo M, Giovannetti L.

Microb Ecol. 2005 Oct;50(3):375-84. Epub 2005 Nov 3.

PMID:
16254761
37.

Putative midkine family protein up-regulation in Patella caerulea (Mollusca, Gastropoda) exposed to sublethal concentrations of cadmium.

Vanucci S, Minerdi D, Kadomatsu K, Mengoni A, Bazzicalupo M.

Aquat Toxicol. 2005 Nov 30;75(4):374-9. Epub 2005 Oct 25.

PMID:
16253353
38.

Improvement of the cDNA-AFLP method using fluorescent primers for transcription analysis in bacteria.

Decorosi F, Viti C, Mengoni A, Bazzicalupo M, Giovannetti L.

J Microbiol Methods. 2005 Nov;63(2):211-5. Epub 2005 Jun 4.

PMID:
15939496
39.

Genetic diversity of bacterial communities of serpentine soil and of rhizosphere of the nickel-hyperaccumulator plant Alyssum bertolonii.

Mengoni A, Grassi E, Barzanti R, Biondi EG, Gonnelli C, Kim CK, Bazzicalupo M.

Microb Ecol. 2004 Aug;48(2):209-17. Epub 2004 Jun 10.

PMID:
15546041
40.

Comparative analysis of cyanobacterial communities from polluted reservoirs in Korea.

Kim JB, Moon MS, Lee DH, Lee ST, Bazzicalupo M, Kim CK.

J Microbiol. 2004 Sep;42(3):181-7.

PMID:
15459645
41.

Extended phenotype of an mreB-like mutant in Azospirillum brasilense.

Biondi EG, Marini F, Altieri F, Bonzi L, Bazzicalupo M, del Gallo M.

Microbiology. 2004 Jul;150(Pt 7):2465-74.

PMID:
15256588
42.

Mediterranean Talitrus saltator (Crustacea, Amphipoda) as a biomonitor of heavy metals contamination.

Ugolini A, Borghini F, Calosi P, Bazzicalupo M, Chelazzi G, Focardi S.

Mar Pollut Bull. 2004 Mar;48(5-6):526-32.

PMID:
14980468
43.

IS Rm31, a new insertion sequence of the IS 66 family in Sinorhizobium meliloti.

Biondi EG, Femia AP, Favilli F, Bazzicalupo M.

Arch Microbiol. 2003 Aug;180(2):118-26. Epub 2003 Jun 19.

PMID:
12819859
44.

Genetic relationship of Sinorhizobium meliloti and Sinorhizobium medicae strains isolated from Caucasian region.

Biondi EG, Pilli E, Giuntini E, Roumiantseva ML, Andronov EE, Onichtchouk OP, Kurchak ON, Simarov BV, Dzyubenko NI, Mengoni A, Bazzicalupo M.

FEMS Microbiol Lett. 2003 Mar 28;220(2):207-13.

45.

Cloning method for taxonomic interpretation of T-RFLP patterns.

Mengoni A, Grassi E, Bazzicalupo M.

Biotechniques. 2002 Nov;33(5):990, 992. No abstract available.

46.

Characterization of nickel-resistant bacteria isolated from serpentine soil.

Mengoni A, Barzanti R, Gonnelli C, Gabbrielli R, Bazzicalupo M.

Environ Microbiol. 2001 Nov;3(11):691-8.

PMID:
11846759
47.

Genetic diversity of heavy metal-tolerant populations in Silene paradoxa L. (Caryophyllaceae): a chloroplast microsatellite analysis.

Mengoni A, Barabesi C, Gonnelli C, Galardi F, Gabbrielli R, Bazzicalupo M.

Mol Ecol. 2001 Aug;10(8):1909-16.

PMID:
11555235
48.

Genetic diversity and dynamics of Sinorhizobium meliloti populations nodulating different alfalfa cultivars in Italian soils.

Carelli M, Gnocchi S, Fancelli S, Mengoni A, Paffetti D, Scotti C, Bazzicalupo M.

Appl Environ Microbiol. 2000 Nov;66(11):4785-9.

49.

Genetic diversity and heavy metal tolerance in populations of Silene paradoxa L. (Caryophyllaceae): a random amplified polymorphic DNA analysis.

Mengoni A, Gonnelli C, Galardi F, Gabbrielli R, Bazzicalupo M.

Mol Ecol. 2000 Sep;9(9):1319-24.

PMID:
10972771
50.

ISRm10: a new insertion sequence of Sinorhizobium meliloti: nucleotide sequence and geographic distribution.

Biondi EG, Fancelli S, Bazzicalupo M.

FEMS Microbiol Lett. 1999 Dec 1;181(1):171-6.

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