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Shear Wave Propagation and Estimation of Material Parameters in a Nonlinear, Fibrous Material.

Hou Z, Okamoto RJ, Bayly PV.

J Biomech Eng. 2019 Aug 1. doi: 10.1115/1.4044504. [Epub ahead of print]


Insights Into Traumatic Brain Injury From MRI of Harmonic Brain Motion.

Okamoto RJ, Romano AJ, Johnson CL, Bayly PV.

J Exp Neurosci. 2019 Apr 7;13:1179069519840444. doi: 10.1177/1179069519840444. eCollection 2019.


Acoustic trap-and-release for rapid assessment of cell motility.

Kim M, Huff E, Bottier M, Dutcher SK, Bayly PV, Meacham JM.

Soft Matter. 2019 May 29;15(21):4266-4275. doi: 10.1039/c9sm00184k.


How Does Cilium Length Affect Beating?

Bottier M, Thomas KA, Dutcher SK, Bayly PV.

Biophys J. 2019 Apr 2;116(7):1292-1304. doi: 10.1016/j.bpj.2019.02.012. Epub 2019 Feb 26.


A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium.

Lu YC, Daphalapurkar NP, Knutsen AK, Glaister J, Pham DL, Butman JA, Prince JL, Bayly PV, Ramesh KT.

Ann Biomed Eng. 2019 Sep;47(9):1923-1940. doi: 10.1007/s10439-019-02226-z. Epub 2019 Feb 14.


Erratum: "The Relationship of Three-Dimensional Human Skull Motion to Brain Tissue Deformation in Magnetic Resonance Elastography Studies" (ASME J. Biomech. Eng., 2017, 139(5), p. 051002; DOI: 10.1115/1.4036146) to Paper Number BIO-16-1363.

Badachhape AA, Okamoto RJ, Durham RS, Efron D, Nadell SJ, Johnson CL, Bayly PV.

J Biomech Eng. 2018 Dec 1;140(12). doi: 10.1115/1.4040947. No abstract available.


Mechanics of cortical folding: stress, growth and stability.

Garcia KE, Kroenke CD, Bayly PV.

Philos Trans R Soc Lond B Biol Sci. 2018 Sep 24;373(1759). pii: 20170321. doi: 10.1098/rstb.2017.0321. Review.


Calibration error due to different motion-encoding gradient strength on two scanners.

Badachhape A, Okamoto R, Durham RS, Efron BD, Nadell SJ, Johnson CL, Bayly PV.

J Biomech Eng. 2018 Jul 23. doi: 10.1115/1.4040947. [Epub ahead of print]


Statistical Characterization of Human Brain Deformation During Mild Angular Acceleration Measured In Vivo by Tagged Magnetic Resonance Imaging.

Chan DD, Knutsen AK, Lu YC, Yang SH, Magrath E, Wang WT, Bayly PV, Butman JA, Pham DL.

J Biomech Eng. 2018 Oct 1;140(10). doi: 10.1115/1.4040230.


Quantifying Ciliary Dynamics during Assembly Reveals Stepwise Waveform Maturation in Airway Cells.

Oltean A, Schaffer AJ, Bayly PV, Brody SL.

Am J Respir Cell Mol Biol. 2018 Oct;59(4):511-522. doi: 10.1165/rcmb.2017-0436OC.


modCHIMERA: a novel murine closed-head model of moderate traumatic brain injury.

Sauerbeck AD, Fanizzi C, Kim JH, Gangolli M, Bayly PV, Wellington CL, Brody DL, Kummer TT.

Sci Rep. 2018 May 16;8(1):7677. doi: 10.1038/s41598-018-25737-6.


Frequency-dependent shear properties of annulus fibrosus and nucleus pulposus by magnetic resonance elastography.

Beauchemin PF, Bayly PV, Garbow JR, Schmidt JLS, Okamoto RJ, Chériet F, Périé D.

NMR Biomed. 2018 Oct;31(10):e3918. doi: 10.1002/nbm.3918. Epub 2018 May 4.


Pre-clinical MR elastography: Principles, techniques, and applications.

Bayly PV, Garbow JR.

J Magn Reson. 2018 Jun;291:73-83. doi: 10.1016/j.jmr.2018.01.004. Epub 2018 Apr 26.


Relationships between scalp, brain, and skull motion estimated using magnetic resonance elastography.

Badachhape AA, Okamoto RJ, Johnson CL, Bayly PV.

J Biomech. 2018 May 17;73:40-49. doi: 10.1016/j.jbiomech.2018.03.028. Epub 2018 Mar 17.


Dynamic patterns of cortical expansion during folding of the preterm human brain.

Garcia KE, Robinson EC, Alexopoulos D, Dierker DL, Glasser MF, Coalson TS, Ortinau CM, Rueckert D, Taber LA, Van Essen DC, Rogers CE, Smyser CD, Bayly PV.

Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3156-3161. doi: 10.1073/pnas.1715451115. Epub 2018 Mar 5.


Mechanical properties of porcine brain tissue in vivo and ex vivo estimated by MR elastography.

Guertler CA, Okamoto RJ, Schmidt JL, Badachhape AA, Johnson CL, Bayly PV.

J Biomech. 2018 Mar 1;69:10-18. doi: 10.1016/j.jbiomech.2018.01.016. Epub 2018 Jan 31.


How Forces Fold the Cerebral Cortex.

Kroenke CD, Bayly PV.

J Neurosci. 2018 Jan 24;38(4):767-775. doi: 10.1523/JNEUROSCI.1105-17.2017. Review.


Finite element models of flagella with sliding radial spokes and interdoublet links exhibit propagating waves under steady dynein loading.

Hu T, Bayly PV.

Cytoskeleton (Hoboken). 2018 May;75(5):185-200. doi: 10.1002/cm.21432. Epub 2018 Jan 18.


Measurement of anisotropic mechanical properties in porcine brain white matter ex vivo using magnetic resonance elastography.

Schmidt JL, Tweten DJ, Badachhape AA, Reiter AJ, Okamoto RJ, Garbow JR, Bayly PV.

J Mech Behav Biomed Mater. 2018 Mar;79:30-37. doi: 10.1016/j.jmbbm.2017.11.045. Epub 2017 Dec 9.


Multimodal surface matching with higher-order smoothness constraints.

Robinson EC, Garcia K, Glasser MF, Chen Z, Coalson TS, Makropoulos A, Bozek J, Wright R, Schuh A, Webster M, Hutter J, Price A, Cordero Grande L, Hughes E, Tusor N, Bayly PV, Van Essen DC, Smith SM, Edwards AD, Hajnal J, Jenkinson M, Glocker B, Rueckert D.

Neuroimage. 2018 Feb 15;167:453-465. doi: 10.1016/j.neuroimage.2017.10.037. Epub 2017 Oct 31.


Phase Vector Incompressible Registration Algorithm for Motion Estimation From Tagged Magnetic Resonance Images.

Xing F, Woo J, Gomez AD, Pham DL, Bayly PV, Stone M, Prince JL.

IEEE Trans Med Imaging. 2017 Oct;36(10):2116-2128. doi: 10.1109/TMI.2017.2723021. Epub 2017 Jul 4.


Actin growth profile in clathrin-mediated endocytosis.

Tweten DJ, Bayly PV, Carlsson AE.

Phys Rev E. 2017 May;95(5-1):052414. doi: 10.1103/PhysRevE.95.052414. Epub 2017 May 23.


Correction: Analysis of unstable modes distinguishes mathematical models of flagellar motion.

Bayly PV, Wilson KS.

J R Soc Interface. 2017 Jun;14(131). pii: 20170370. doi: 10.1098/rsif.2017.0370. No abstract available.


A Three-Dimensional Computational Human Head Model That Captures Live Human Brain Dynamics.

Ganpule S, Daphalapurkar NP, Ramesh KT, Knutsen AK, Pham DL, Bayly PV, Prince JL.

J Neurotrauma. 2017 Jul 1;34(13):2154-2166. doi: 10.1089/neu.2016.4744. Epub 2017 Apr 10.


The Relationship of Three-Dimensional Human Skull Motion to Brain Tissue Deformation in Magnetic Resonance Elastography Studies.

Badachhape AA, Okamoto RJ, Durham RS, Efron BD, Nadell SJ, Johnson CL, Bayly PV.

J Biomech Eng. 2017 May 1;139(5). doi: 10.1115/1.4036146. Erratum in: J Biomech Eng. 2018 Dec 1;140(12):.


Requirements for accurate estimation of anisotropic material parameters by magnetic resonance elastography: A computational study.

Tweten DJ, Okamoto RJ, Bayly PV.

Magn Reson Med. 2017 Dec;78(6):2360-2372. doi: 10.1002/mrm.26600. Epub 2017 Jan 17.


Contraction and stress-dependent growth shape the forebrain of the early chicken embryo.

Garcia KE, Okamoto RJ, Bayly PV, Taber LA.

J Mech Behav Biomed Mater. 2017 Jan;65:383-397. doi: 10.1016/j.jmbbm.2016.08.010. Epub 2016 Aug 15.


A longitudinal magnetic resonance elastography study of murine brain tumors following radiation therapy.

Feng Y, Clayton EH, Okamoto RJ, Engelbach J, Bayly PV, Garbow JR.

Phys Med Biol. 2016 Aug 21;61(16):6121-31. doi: 10.1088/0031-9155/61/16/6121. Epub 2016 Jul 27.


Flexural Rigidity and Shear Stiffness of Flagella Estimated from Induced Bends and Counterbends.

Xu G, Wilson KS, Okamoto RJ, Shao JY, Dutcher SK, Bayly PV.

Biophys J. 2016 Jun 21;110(12):2759-2768. doi: 10.1016/j.bpj.2016.05.017.


On the accuracy and fitting of transversely isotropic material models.

Feng Y, Okamoto RJ, Genin GM, Bayly PV.

J Mech Behav Biomed Mater. 2016 Aug;61:554-566. doi: 10.1016/j.jmbbm.2016.04.024. Epub 2016 Apr 22.


Magnetic resonance elastography of slow and fast shear waves illuminates differences in shear and tensile moduli in anisotropic tissue.

Schmidt JL, Tweten DJ, Benegal AN, Walker CH, Portnoi TE, Okamoto RJ, Garbow JR, Bayly PV.

J Biomech. 2016 May 3;49(7):1042-1049. doi: 10.1016/j.jbiomech.2016.02.018. Epub 2016 Feb 15.


Estimation of material parameters from slow and fast shear waves in an incompressible, transversely isotropic material.

Tweten DJ, Okamoto RJ, Schmidt JL, Garbow JR, Bayly PV.

J Biomech. 2015 Nov 26;48(15):4002-9. doi: 10.1016/j.jbiomech.2015.09.009. Epub 2015 Oct 9.


Dynein-deficient flagella respond to increased viscosity with contrasting changes in power and recovery strokes.

Wilson KS, Gonzalez O, Dutcher SK, Bayly PV.

Cytoskeleton (Hoboken). 2015 Sep;72(9):477-90. doi: 10.1002/cm.21252. Epub 2015 Sep 16.


Analysis of unstable modes distinguishes mathematical models of flagellar motion.

Bayly PV, Wilson KS.

J R Soc Interface. 2015 May 6;12(106). pii: 20150124. doi: 10.1098/rsif.2015.0124. Erratum in: J R Soc Interface. 2017 Jun;14 (131):.


Equations of interdoublet separation during flagella motion reveal mechanisms of wave propagation and instability.

Bayly PV, Wilson KS.

Biophys J. 2014 Oct 7;107(7):1756-72. doi: 10.1016/j.bpj.2014.07.064.


Improved measurement of brain deformation during mild head acceleration using a novel tagged MRI sequence.

Knutsen AK, Magrath E, McEntee JE, Xing F, Prince JL, Bayly PV, Butman JA, Pham DL.

J Biomech. 2014 Nov 7;47(14):3475-81. doi: 10.1016/j.jbiomech.2014.09.010. Epub 2014 Sep 28.


Strain Localization in an Oscillating Maxwell Viscoelastic Cylinder.

Massouros PG, Bayly PV, Genin GM.

Int J Solids Struct. 2014 Jan 15;51(2):305-313.


Force generation by endocytic actin patches in budding yeast.

Carlsson AE, Bayly PV.

Biophys J. 2014 Apr 15;106(8):1596-606. doi: 10.1016/j.bpj.2014.02.035.


CCDC65 mutation causes primary ciliary dyskinesia with normal ultrastructure and hyperkinetic cilia.

Horani A, Brody SL, Ferkol TW, Shoseyov D, Wasserman MG, Ta-shma A, Wilson KS, Bayly PV, Amirav I, Cohen-Cymberknoh M, Dutcher SK, Elpeleg O, Kerem E.

PLoS One. 2013 Aug 26;8(8):e72299. doi: 10.1371/journal.pone.0072299. eCollection 2013.


Measurements of mechanical anisotropy in brain tissue and implications for transversely isotropic material models of white matter.

Feng Y, Okamoto RJ, Namani R, Genin GM, Bayly PV.

J Mech Behav Biomed Mater. 2013 Jul;23:117-32. doi: 10.1016/j.jmbbm.2013.04.007. Epub 2013 Apr 17.


Mechanical forces in cerebral cortical folding: a review of measurements and models.

Bayly PV, Taber LA, Kroenke CD.

J Mech Behav Biomed Mater. 2014 Jan;29:568-81. doi: 10.1016/j.jmbbm.2013.02.018. Epub 2013 Mar 14. Review.


Mechanical properties of viscoelastic media by local frequency estimation of divergence-free wave fields.

Clayton EH, Okamoto RJ, Bayly PV.

J Biomech Eng. 2013 Feb;135(2):021025. doi: 10.1115/1.4023433.


A cortical folding model incorporating stress-dependent growth explains gyral wavelengths and stress patterns in the developing brain.

Bayly PV, Okamoto RJ, Xu G, Shi Y, Taber LA.

Phys Biol. 2013 Feb;10(1):016005. doi: 10.1088/1478-3975/10/1/016005. Epub 2013 Jan 28.


Viscoelastic properties of the ferret brain measured in vivo at multiple frequencies by magnetic resonance elastography.

Feng Y, Clayton EH, Chang Y, Okamoto RJ, Bayly PV.

J Biomech. 2013 Mar 15;46(5):863-70. doi: 10.1016/j.jbiomech.2012.12.024. Epub 2013 Jan 24.


Regional differences in actomyosin contraction shape the primary vesicles in the embryonic chicken brain.

Filas BA, Oltean A, Majidi S, Bayly PV, Beebe DC, Taber LA.

Phys Biol. 2012 Dec;9(6):066007. doi: 10.1088/1478-3975/9/6/066007. Epub 2012 Nov 16.


Whole-exome capture and sequencing identifies HEATR2 mutation as a cause of primary ciliary dyskinesia.

Horani A, Druley TE, Zariwala MA, Patel AC, Levinson BT, Van Arendonk LG, Thornton KC, Giacalone JC, Albee AJ, Wilson KS, Turner EH, Nickerson DA, Shendure J, Bayly PV, Leigh MW, Knowles MR, Brody SL, Dutcher SK, Ferkol TW.

Am J Hum Genet. 2012 Oct 5;91(4):685-93. doi: 10.1016/j.ajhg.2012.08.022.


Elastic characterization of transversely isotropic soft materials by dynamic shear and asymmetric indentation.

Namani R, Feng Y, Okamoto RJ, Jesuraj N, Sakiyama-Elbert SE, Genin GM, Bayly PV.

J Biomech Eng. 2012 Jun;134(6):061004. doi: 10.1115/1.4006848.


Transmission, attenuation and reflection of shear waves in the human brain.

Clayton EH, Genin GM, Bayly PV.

J R Soc Interface. 2012 Nov 7;9(76):2899-910. Epub 2012 Jun 6.

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