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Items: 26

1.

Gene composition as a potential barrier to large recombinations in the bacterial pathogen Klebsiella pneumoniae.

Comandatore F, Sassera D, Bayliss SC, Scaltriti E, Gaiarsa S, Cao X, Gales A, Saito R, Pongolini S, Brisse S, Feil E, Bandi C.

Genome Biol Evol. 2019 Oct 29. pii: evz236. doi: 10.1093/gbe/evz236. [Epub ahead of print]

PMID:
31665331
2.

PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria.

Bayliss SC, Thorpe HA, Coyle NM, Sheppard SK, Feil EJ.

Gigascience. 2019 Oct 1;8(10). pii: giz119. doi: 10.1093/gigascience/giz119.

3.

Gene pool transmission of multidrug resistance among Campylobacter from livestock, sewage and human disease.

Mourkas E, Florez-Cuadrado D, Pascoe B, Calland JK, Bayliss SC, Mageiros L, Méric G, Hitchings MD, Quesada A, Porrero C, Ugarte-Ruiz M, Gutiérrez-Fernández J, Domínguez L, Sheppard SK.

Environ Microbiol. 2019 Aug 5. doi: 10.1111/1462-2920.14760. [Epub ahead of print]

PMID:
31385413
4.

Patterns of cross-resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials.

Colclough A, Corander J, Sheppard SK, Bayliss SC, Vos M.

Evol Appl. 2019 Jan 28;12(5):878-887. doi: 10.1111/eva.12762. eCollection 2019 Jun.

5.

WGS of 1058 Enterococcus faecium from Copenhagen, Denmark, reveals rapid clonal expansion of vancomycin-resistant clone ST80 combined with widespread dissemination of a vanA-containing plasmid and acquisition of a heterogeneous accessory genome.

Pinholt M, Bayliss SC, Gumpert H, Worning P, Jensen VVS, Pedersen M, Feil EJ, Westh H.

J Antimicrob Chemother. 2019 Jul 1;74(7):1776-1785. doi: 10.1093/jac/dkz118.

PMID:
30929020
6.

Real time monitoring of Aeromonas salmonicida evolution in response to successive antibiotic therapies in a commercial fish farm.

Du X, Bayliss SC, Feil EJ, Liu Y, Wang C, Zhang G, Zhou D, Wei D, Tang N, Leclercq SO, Feng J.

Environ Microbiol. 2019 Mar;21(3):1113-1123. doi: 10.1111/1462-2920.14531. Epub 2019 Feb 22.

PMID:
30637959
7.

Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry.

Bayliss SC, Verner-Jeffreys DW, Ryder D, Suarez R, Ramirez R, Romero J, Pascoe B, Sheppard SK, Godoy M, Feil EJ.

Microb Genom. 2018 Sep;4(9). doi: 10.1099/mgen.0.000201. Epub 2018 Jul 24.

8.

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria.

Thorpe HA, Bayliss SC, Sheppard SK, Feil EJ.

Gigascience. 2018 Apr 1;7(4):1-11. doi: 10.1093/gigascience/giy015.

9.
10.

Bayesian identification of bacterial strains from sequencing data.

Sankar A, Malone B, Bayliss SC, Pascoe B, Méric G, Hitchings MD, Sheppard SK, Feil EJ, Corander J, Honkela A.

Microb Genom. 2016 Aug 25;2(8):e000075. doi: 10.1099/mgen.0.000075. eCollection 2016 Aug.

11.

The use of Oxford Nanopore native barcoding for complete genome assembly.

Bayliss SC, Hunt VL, Yokoyama M, Thorpe HA, Feil EJ.

Gigascience. 2017 Mar 1;6(3):1-6. doi: 10.1093/gigascience/gix001.

12.

Comparative Analyses of Selection Operating on Nontranslated Intergenic Regions of Diverse Bacterial Species.

Thorpe HA, Bayliss SC, Hurst LD, Feil EJ.

Genetics. 2017 May;206(1):363-376. doi: 10.1534/genetics.116.195784. Epub 2017 Mar 9.

13.

The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens.

Bayliss SC, Verner-Jeffreys DW, Bartie KL, Aanensen DM, Sheppard SK, Adams A, Feil EJ.

Front Microbiol. 2017 Feb 3;8:121. doi: 10.3389/fmicb.2017.00121. eCollection 2017. Review.

14.

Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing.

Senghore M, Bayliss SC, Kwambana-Adams BA, Foster-Nyarko E, Manneh J, Dione M, Badji H, Ebruke C, Doughty EL, Thorpe HA, Jasinska AJ, Schmitt CA, Cramer JD, Turner TR, Weinstock G, Freimer NB, Pallen MJ, Feil EJ, Antonio M.

Appl Environ Microbiol. 2016 Sep 16;82(19):5910-7. doi: 10.1128/AEM.01496-16. Print 2016 Oct 1.

15.

In situ EXAFS, X-ray diffraction and photoluminescence for high-pressure studies.

Sapelkin AV, Bayliss SC, Russell D, Clark SM, Dent AJ.

J Synchrotron Radiat. 2000 Jul 1;7(Pt 4):257-61. Epub 2000 Jul 1.

PMID:
16609204
16.

Interaction of B50 rat hippocampal cells with stain-etched porous silicon.

Sapelkin AV, Bayliss SC, Unal B, Charalambou A.

Biomaterials. 2006 Feb;27(6):842-6. Epub 2005 Aug 10.

PMID:
16098578
17.

Pressure-induced crossover between diffusive and displacive mechanisms of phase transitions in single-crystalline alpha-GeO2.

Brazhkin VV, Lyapin AG, Voloshin RN, Popova SV, Tat'yanin EV, Borovikov NF, Bayliss SC, Sapelkin AV.

Phys Rev Lett. 2003 Apr 11;90(14):145503. Epub 2003 Apr 11.

PMID:
12731927
18.

Pressure-induced distortion of the amorphous tetrahedral network in a-GaSb: Direct evidence from EXAFS.

Lyapin AG, Brazhkin VV, Bayliss SC, Sapelkin AV, Itié JP, Polian A, Clark SM.

Phys Rev B Condens Matter. 1996 Nov 15;54(20):R14242-R14245. No abstract available.

PMID:
9985497
19.

Phase transformations and the nature of the semiconductor-to-metal transition in bulk a-GaSb and a-(Ge2)1-x(GaSb)x semiconductors under high pressure.

Brazhkin VV, Lyapin AG, Khvostantsev LG, Sidorov VA, Tsiok OB, Bayliss SC, Sapelkin AV, Clark SM.

Phys Rev B Condens Matter. 1996 Jul 15;54(3):1808-1818. No abstract available.

PMID:
9986028
20.

Morphology of islanded transition-metal films on graphite studied by extreme-UV reflectivity.

Binns C, Baker SH, Keen AM, Mozley SN, Norris C, Derbyshire HS, Bayliss SC.

Phys Rev B Condens Matter. 1996 Mar 15;53(11):7451-7459. No abstract available.

PMID:
9982194
21.

Appearance of surface magnetic moments on vanadium thin films and sensitivity to contamination.

Binns C, Derbyshire HS, Bayliss SC, Norris C.

Phys Rev B Condens Matter. 1992 Jan 1;45(1):460-463. No abstract available.

PMID:
10000201
22.

Light transmission measurements and phototherapy eyepatches.

Robinson J, Moseley MJ, Fielder AR, Bayliss SC.

Arch Dis Child. 1991 Jan;66(1 Spec No):59-61.

23.

Transmission of light across the adult and neonatal eyelid in vivo.

Robinson J, Bayliss SC, Fielder AR.

Vision Res. 1991;31(10):1837-40.

PMID:
1767502
24.

Phototherapy and the use of heat shields.

Bayliss SC, Moseley MJ, Hobbs B, Curnock DA.

Arch Dis Child. 1988 Oct;63(10):1295-6. No abstract available.

25.

Light transmission through the human eyelid: in vivo measurement.

Moseley MJ, Bayliss SC, Fielder AR.

Ophthalmic Physiol Opt. 1988;8(2):229-30.

PMID:
3211565
26.

Light transmission of phototherapy eyeshields.

Chin KC, Moseley MJ, Bayliss SC.

Arch Dis Child. 1987 Sep;62(9):970-1.

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