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Items: 1 to 50 of 91

1.

Transcriptomic differences noted in Glaesserella parasuis between growth in broth and on agar.

Hau SJ, Mou KT, Bayles DO, Brockmeier SL.

PLoS One. 2019 Aug 6;14(8):e0220365. doi: 10.1371/journal.pone.0220365. eCollection 2019.

2.

Genomic and antigenic characterization of a cytopathic bovine viral diarrhea virus 1i isolated in the United States.

Neill JD, Crossley BM, Mosena AC, Ridpath JF, Bayles DO, Hietala SK, Killian ML, Falkenberg SM.

Virology. 2019 Jul 24;535:279-282. doi: 10.1016/j.virol.2019.07.020. [Epub ahead of print]

3.

Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7.

Sharma VK, Akavaram S, Schaut RG, Bayles DO.

BMC Genomics. 2019 Mar 8;20(1):196. doi: 10.1186/s12864-019-5568-6.

4.

Identification of BVDV2b and 2c subgenotypes in the United States: Genetic and antigenic characterization.

Neill JD, Workman AM, Hesse R, Bai J, Porter EP, Meadors B, Anderson J, Bayles DO, Falkenberg SM.

Virology. 2019 Feb;528:19-29. doi: 10.1016/j.virol.2018.12.002. Epub 2018 Dec 13.

5.

Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates.

Nicholson TL, Brunelle BW, Bayles DO, Alt DP, Shore SM.

PLoS One. 2018 Nov 1;13(11):e0205700. doi: 10.1371/journal.pone.0205700. eCollection 2018.

6.

Coincidence cloning recovery of Brucella melitensis RNA from goat tissues: advancing the in vivo analysis of pathogen gene expression in brucellosis.

Boggiatto PM, Fitzsimmons D, Bayles DO, Alt D, Vrentas CE, Olsen SC.

BMC Mol Biol. 2018 Aug 1;19(1):10. doi: 10.1186/s12867-018-0111-x.

7.

Draft Genome Sequences of 50 Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates Obtained from a U.S. Hospital.

Hau SJ, Bayles DO, Alt DP, Nicholson TL.

Genome Announc. 2017 Nov 2;5(44). pii: e01083-17. doi: 10.1128/genomeA.01083-17.

8.

Draft Genome Sequences of 14 Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Isolates from Swine Farms in the United States.

Hau SJ, Bayles DO, Alt DP, Frana TS, Nicholson TL.

Genome Announc. 2017 Nov 2;5(44). pii: e01082-17. doi: 10.1128/genomeA.01082-17.

9.

Draft Genome Sequences of 63 Swine-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates from the United States.

Hau SJ, Bayles DO, Alt DP, Frana TS, Nicholson TL.

Genome Announc. 2017 Nov 2;5(44). pii: e01081-17. doi: 10.1128/genomeA.01081-17.

10.

Draft Genome Sequences of One Methicillin-Sensitive and Seven Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates Obtained in California.

Hau SJ, Bayles DO, Alt DP, Nicholson TL.

Genome Announc. 2017 Oct 19;5(42). pii: e01084-17. doi: 10.1128/genomeA.01084-17.

11.

Draft Genome Sequences of Nine Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates Obtained from Humans after Short-Term Swine Contact.

Hau SJ, Bayles DO, Alt DP, Frana TS, Nicholson TL.

Genome Announc. 2017 Oct 12;5(41). pii: e01080-17. doi: 10.1128/genomeA.01080-17.

12.

Draft Genome Sequences of Nine Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates from Humans with Long-Term Swine Contact.

Hau SJ, Bayles DO, Alt DP, Davies PR, Haan JS, Nicholson TL.

Genome Announc. 2017 Oct 12;5(41). pii: e01079-17. doi: 10.1128/genomeA.01079-17.

13.

Complete Genome Sequence of a Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolate from the United States.

Hau SJ, Bayles DO, Alt DP, Frana TS, Nicholson TL.

Genome Announc. 2017 Aug 10;5(32). pii: e00791-17. doi: 10.1128/genomeA.00791-17.

14.

Complete Genome Sequence of Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Isolated from Swine in the United States.

Hau SJ, Bayles DO, Alt DP, Frana TS, Nicholson TL.

Genome Announc. 2017 Aug 10;5(32). pii: e00790-17. doi: 10.1128/genomeA.00790-17.

15.

The In-Feed Antibiotic Carbadox Induces Phage Gene Transcription in the Swine Gut Microbiome.

Johnson TA, Looft T, Severin AJ, Bayles DO, Nasko DJ, Wommack KE, Howe A, Allen HK.

MBio. 2017 Aug 8;8(4). pii: e00709-17. doi: 10.1128/mBio.00709-17.

16.

Comparative analysis of signature genes in PRRSV-infected porcine monocyte-derived cells to different stimuli.

Miller LC, Fleming DS, Li X, Bayles DO, Blecha F, Sang Y.

PLoS One. 2017 Jul 20;12(7):e0181256. doi: 10.1371/journal.pone.0181256. eCollection 2017.

17.

Cell wall peptidolipids of Mycobacterium avium: from genetic prediction to exact structure of a nonribosomal peptide.

Bannantine JP, Etienne G, Laval F, Stabel JR, Lemassu A, Daffé M, Bayles DO, Ganneau C, Bonhomme F, Branger M, Cochard T, Bay S, Biet F.

Mol Microbiol. 2017 Aug;105(4):525-539. doi: 10.1111/mmi.13717. Epub 2017 Jun 15.

18.

Salmonella DIVA vaccine reduces disease, colonization and shedding due to virulent S. Typhimurium infection in swine.

Bearson BL, Bearson SMD, Brunelle BW, Bayles DO, Lee IS, Kich JD.

J Med Microbiol. 2017 May;66(5):651-661. doi: 10.1099/jmm.0.000482. Epub 2017 May 18.

19.

Complete Genome Sequences of Two Staphylococcus aureus Sequence Type 5 Isolates from California, USA.

Hau SJ, Bayles DO, Alt DP, Nicholson TL.

Genome Announc. 2017 Mar 30;5(13). pii: e00099-17. doi: 10.1128/genomeA.00099-17.

20.

Draft Genome Sequences of 14 Staphylococcus aureus Sequence Type 5 Isolates from California, USA.

Hau SJ, Bayles DO, Alt DP, Nicholson TL.

Genome Announc. 2017 Mar 30;5(13). pii: e00098-17. doi: 10.1128/genomeA.00098-17.

21.
22.

Complete Genome Sequences of Curli-Negative and Curli-Positive Isolates of Foodborne Escherichia coli O157:H7 Strain 86-24.

Sharma VK, Bayles DO, Alt DP, Looft T.

Genome Announc. 2016 Dec 15;4(6). pii: e01323-16. doi: 10.1128/genomeA.01323-16.

23.

Emerging Infectious Disease Implications of Invasive Mammalian Species: The Greater White-Toothed Shrew (Crocidura russula) Is Associated With a Novel Serovar of Pathogenic Leptospira in Ireland.

Nally JE, Arent Z, Bayles DO, Hornsby RL, Gilmore C, Regan S, McDevitt AD, Yearsley J, Fanning S, McMahon BJ.

PLoS Negl Trop Dis. 2016 Dec 9;10(12):e0005174. doi: 10.1371/journal.pntd.0005174. eCollection 2016 Dec.

24.

Complete Genome Sequence of Leptospira alstonii Serovar Room22 Strain GWTS #1.

Nally JE, Bayles DO, Hurley D, Fanning S, McMahon BJ, Arent Z.

Genome Announc. 2016 Nov 10;4(6). pii: e01230-16. doi: 10.1128/genomeA.01230-16.

25.

Temporal dynamics of 'HoBi'-like pestivirus quasispecies in persistently infected calves generated under experimental conditions.

Weber MN, Bauermann FV, Canal CW, Bayles DO, Neill JD, Ridpath JF.

Virus Res. 2017 Jan 2;227:23-33. doi: 10.1016/j.virusres.2016.09.018. Epub 2016 Sep 28.

PMID:
27693289
26.

Function and Phylogeny of Bacterial Butyryl Coenzyme A:Acetate Transferases and Their Diversity in the Proximal Colon of Swine.

Trachsel J, Bayles DO, Looft T, Levine UY, Allen HK.

Appl Environ Microbiol. 2016 Oct 27;82(22):6788-6798. Print 2016 Nov 15.

27.

Pipeline for amplifying and analyzing amplicons of the V1-V3 region of the 16S rRNA gene.

Allen HK, Bayles DO, Looft T, Trachsel J, Bass BE, Alt DP, Bearson SM, Nicholson T, Casey TA.

BMC Res Notes. 2016 Aug 2;9:380. doi: 10.1186/s13104-016-2172-6.

28.

Comparison of 'HoBi'-like viral populations among persistent infected calves generated under experimental conditions and to inoculum virus.

Weber MN, Bauermann FV, Bayles DO, Canal CW, Neill JD, Ridpath JF.

Virology. 2016 May;492:225-31. doi: 10.1016/j.virol.2016.03.001. Epub 2016 Mar 21.

29.

Analysis of Mycobacterium avium subsp. paratuberculosis Mutant Libraries Reveals Loci-dependent Transposition Biases and Strategies to Novel Mutant Discovery.

Rathnaiah G, Bannantine JP, Bayles DO, Zinniel DK, Stabel JR, Gröhn YT, Barletta RG.

Microbiology. 2016 Feb 16. doi: 10.1099/mic.0.000258. [Epub ahead of print]

PMID:
26888023
30.

Effects of Pseudorabies Virus Infection on the Tracheobronchial Lymph Node Transcriptome.

Miller LC, Bayles DO, Zanella EL, Lager KM.

Bioinform Biol Insights. 2016 Jan 24;9(Suppl 2):25-36. doi: 10.4137/BBI.S30522. eCollection 2015.

31.

Comparative genomic analysis of the swine pathogen Bordetella bronchisepticastrain KM22.

Nicholson TL, Shore SM, Register KB, Bayles DO, Kingsley RA, Brunelle BW.

Vet Microbiol. 2016;182:87-94. doi: 10.1016/j.vetmic.2015.10.026. Epub 2015 Oct 31.

PMID:
26711033
32.

Draft Genome Sequences of Nine Streptococcus suis Strains Isolated in the United States.

Hau SJ, Bayles DO, Alt DP, Brockmeier SL, Frana TS, Nicholson TL.

Genome Announc. 2015 Nov 5;3(6). pii: e01301-15. doi: 10.1128/genomeA.01301-15.

33.

Complete Genome Sequence of Coriobacteriaceae Strain 68-1-3, a Novel Mucus-Degrading Isolate from the Swine Intestinal Tract.

Looft T, Bayles DO, Alt DP, Stanton TB.

Genome Announc. 2015 Oct 8;3(5). pii: e01143-15. doi: 10.1128/genomeA.01143-15.

34.

Comparison of the breadth and complexity of bovine viral diarrhea (BVDV) populations circulating in 34 persistently infected cattle generated in one outbreak.

Ridpath JF, Bayles DO, Neill JD, Falkenberg SM, Bauermann FV, Holler L, Braun LJ, Young DB, Kane SE, Chase CC.

Virology. 2015 Nov;485:297-304. doi: 10.1016/j.virol.2015.07.022. Epub 2015 Aug 28.

35.

Complete Genome Sequence of Leptospira interrogans Serovar Bratislava, Strain PigK151.

Alt DP, Wilson-Welder JH, Bayles DO, Cameron C, Adler B, Bulach DM, Seemann T, Lehane MJ, Haines LR, Darby AC, Hall N, Radford AD, Zuerner RL.

Genome Announc. 2015 Jun 25;3(3). pii: e00678-15. doi: 10.1128/genomeA.00678-15.

36.

Genome Sequences of Mannheimia haemolytica Serotype A2 Isolates D171 and D35, Recovered from Bovine Pneumonia.

Hauglund MJ, Tatum FM, Bayles DO, Maheswaran SK, Briggs RE.

Genome Announc. 2015 Mar 12;3(2). pii: e00093-15. doi: 10.1128/genomeA.00093-15.

37.

Genome Sequences of Serotype A6 Mannheimia haemolytica Isolates D174 and D38 Recovered from Bovine Pneumonia.

Hauglund MJ, Tatum FM, Bayles DO, Maheswaran SK, Briggs RE.

Genome Announc. 2015 Mar 5;3(2). pii: e00086-15. doi: 10.1128/genomeA.00086-15.

38.

Virulence and draft genome sequence overview of multiple strains of the swine pathogen Haemophilus parasuis.

Brockmeier SL, Register KB, Kuehn JS, Nicholson TL, Loving CL, Bayles DO, Shore SM, Phillips GJ.

PLoS One. 2014 Aug 19;9(8):e103787. doi: 10.1371/journal.pone.0103787. eCollection 2014.

39.

Draft Genome Sequence of the Bordetella bronchiseptica Swine Isolate KM22.

Nicholson TL, Shore SM, Bayles DO, Register KB, Kingsley RA.

Genome Announc. 2014 Jul 10;2(4). pii: e00670-14. doi: 10.1128/genomeA.00670-14.

40.

Simultaneous rapid sequencing of multiple RNA virus genomes.

Neill JD, Bayles DO, Ridpath JF.

J Virol Methods. 2014 Jun;201:68-72. doi: 10.1016/j.jviromet.2014.02.016. Epub 2014 Feb 28.

41.

Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations.

Looft T, Allen HK, Cantarel BL, Levine UY, Bayles DO, Alt DP, Henrissat B, Stanton TB.

ISME J. 2014 Aug;8(8):1566-76. doi: 10.1038/ismej.2014.12. Epub 2014 Feb 13.

42.

Draft Genome Sequence of a Mycobacterium avium Complex Isolate from a Broadbill Bird.

Bannantine JP, Bayles DO, Robbe-Austerman S, Burrell AM, Stabel JR.

Genome Announc. 2014 Jan 30;2(1). pii: e01268-13. doi: 10.1128/genomeA.01268-13.

43.

Estimation of viral richness from shotgun metagenomes using a frequency count approach.

Allen HK, Bunge J, Foster JA, Bayles DO, Stanton TB.

Microbiome. 2013 Feb 4;1(1):5. doi: 10.1186/2049-2618-1-5.

44.

Complete genome sequence of Ornithobacterium rhinotracheale strain ORT-UMN 88.

Zehr ES, Bayles DO, Boatwright WD, Tabatabai LB, Register KB.

Stand Genomic Sci. 2014 Dec 8;9:16. doi: 10.1186/1944-3277-9-16. eCollection 2014.

45.

Non-contiguous finished genome sequence of Ornithobacterium rhinotracheale strain H06-030791.

Zehr ES, Bayles DO, Boatwright WD, Tabatabai LB, Register KB.

Stand Genomic Sci. 2014 Dec 8;9:14. doi: 10.1186/1944-3277-9-14. eCollection 2014.

46.

Biochemical and molecular characterization of Treponema phagedenis-like spirochetes isolated from a bovine digital dermatitis lesion.

Wilson-Welder JH, Elliott MK, Zuerner RL, Bayles DO, Alt DP, Stanton TB.

BMC Microbiol. 2013 Dec 5;13:280. doi: 10.1186/1471-2180-13-280.

47.

Genome Sequences of Mannheimia haemolytica Serotype A1 Strains D153 and D193 from Bovine Pneumonia.

Hauglund MJ, Tatum FM, Bayles DO, Maheswaran SK, Briggs RE.

Genome Announc. 2013 Oct 17;1(5). pii: e00848-13. doi: 10.1128/genomeA.00848-13.

48.

Porcine granulocyte-colony stimulating factor (G-CSF) delivered via replication-defective adenovirus induces a sustained increase in circulating peripheral blood neutrophils.

Loving CL, Kehrli ME Jr, Brockmeier SL, Bayles DO, Michael DD, Schlink SN, Lager KM.

Biologicals. 2013 Nov;41(6):368-76. doi: 10.1016/j.biologicals.2013.07.001. Epub 2013 Jul 25.

PMID:
23891494
49.

A divergent clade of circular single-stranded DNA viruses from pig feces.

Cheung AK, Ng TF, Lager KM, Bayles DO, Alt DP, Delwart EL, Pogranichniy RM, Kehrli ME Jr.

Arch Virol. 2013 Oct;158(10):2157-62. doi: 10.1007/s00705-013-1701-z. Epub 2013 Apr 24.

50.

A longitudinal, mixed methods study of sexual position identity, behavior, and fantasies among young sexual minority men.

Pachankis JE, Buttenwieser IG, Bernstein LB, Bayles DO.

Arch Sex Behav. 2013 Oct;42(7):1241-53. doi: 10.1007/s10508-013-0090-4. Epub 2013 Apr 19.

PMID:
23605572

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