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Items: 38

1.

Interaction of melatonin and Bmal1 in the regulation of PI3K/AKT pathway components and cellular survival.

Beker MC, Caglayan B, Caglayan AB, Kelestemur T, Yalcin E, Caglayan A, Kilic U, Baykal AT, Reiter RJ, Kilic E.

Sci Rep. 2019 Dec 13;9(1):19082. doi: 10.1038/s41598-019-55663-0.

2.

Spatial Lipidomics Reveals Region and Long Chain Base Specific Accumulations of Monosialogangliosides in Amyloid Plaques in Familial Alzheimer's Disease Mice (5xFAD) Brain.

Kaya I, Jennische E, Dunevall J, Lange S, Ewing AG, Malmberg P, Baykal AT, Fletcher JS.

ACS Chem Neurosci. 2020 Jan 2;11(1):14-24. doi: 10.1021/acschemneuro.9b00532. Epub 2019 Dec 12.

PMID:
31774647
3.

Comparison of protein expression profile of limb regeneration between neotenic and metamorphic axolotl.

Sibai M, Altuntaş E, Süzek BE, Şahin B, Parlayan C, Öztürk G, Baykal AT, Demircan T.

Biochem Biophys Res Commun. 2020 Feb 5;522(2):428-434. doi: 10.1016/j.bbrc.2019.11.118. Epub 2019 Nov 22.

PMID:
31767146
4.

Proteomics Analysis of CA1 Region of the Hippocampus in Pre-, Progression and Pathological Stages in a Mouse Model of the Alzheimer's Disease.

Gurel B, Cansev M, Koc C, Ocalan B, Cakir A, Aydin S, Kahveci N, Ulus IH, Sahin B, Basar MK, Baykal AT.

Curr Alzheimer Res. 2019;16(7):613-621. doi: 10.2174/1567205016666190730155926.

PMID:
31362689
5.

Evidence that melatonin downregulates Nedd4-1 E3 ligase and its role in cellular survival.

Yalcin E, Beker MC, Turkseven S, Caglayan B, Gurel B, Kilic U, Caglayan AB, Kalkan R, Baykal AT, Kelestemur T, Kilic E.

Toxicol Appl Pharmacol. 2019 Sep 15;379:114686. doi: 10.1016/j.taap.2019.114686. Epub 2019 Jul 17.

PMID:
31325559
6.

Molecular signatures of chronic periodontitis in gingiva: A genomic and proteomic analysis.

Guzeldemir-Akcakanat E, Alkan B, Sunnetci-Akkoyunlu D, Gurel B, Balta VM, Kan B, Akgun E, Yilmaz EB, Baykal AT, Cine N, Olgac V, Gumuslu E, Savli H.

J Periodontol. 2019 Jun;90(6):663-673. doi: 10.1002/JPER.18-0477. Epub 2019 Feb 20.

PMID:
30653263
7.

Neonatal Neurodegeneration in Alzheimer's Disease Transgenic Mouse Model.

Mazi AR, Arzuman AS, Gurel B, Sahin B, Tuzuner MB, Ozansoy M, Baykal AT.

J Alzheimers Dis Rep. 2018 Apr 12;2(1):79-91. doi: 10.3233/ADR-170049.

8.

Identification of candidate biomarkers in converting and non-converting clinically isolated syndrome by proteomics analysis of cerebrospinal fluid.

Timirci-Kahraman O, Karaaslan Z, Tuzun E, Kurtuncu M, Baykal AT, Gunduz T, Tuzuner MB, Akgun E, Gurel B, Eraksoy M, Kucukali CI.

Acta Neurol Belg. 2019 Mar;119(1):101-111. doi: 10.1007/s13760-018-0954-4. Epub 2018 Jun 5.

PMID:
29873030
9.

Early Stage Alterations in CA1 Extracellular Region Proteins Indicate Dysregulation of IL6 and Iron Homeostasis in the 5XFAD Alzheimer's Disease Mouse Model.

Gurel B, Cansev M, Sevinc C, Kelestemur S, Ocalan B, Cakir A, Aydin S, Kahveci N, Ozansoy M, Taskapilioglu O, Ulus IH, Başar MK, Sahin B, Tuzuner MB, Baykal AT.

J Alzheimers Dis. 2018;61(4):1399-1410. doi: 10.3233/JAD-170329.

PMID:
29376847
10.

In vivo evolutionary engineering for ethanol-tolerance of Saccharomyces cerevisiae haploid cells triggers diploidization.

Turanlı-Yıldız B, Benbadis L, Alkım C, Sezgin T, Akşit A, Gökçe A, Öztürk Y, Baykal AT, Çakar ZP, François JM.

J Biosci Bioeng. 2017 Sep;124(3):309-318. doi: 10.1016/j.jbiosc.2017.04.012. Epub 2017 May 25.

PMID:
28552194
11.

Proteomic profiling of HBV infected liver biopsies with different fibrotic stages.

Katrinli S, Ozdil K, Sahin A, Ozturk O, Kir G, Baykal AT, Akgun E, Sarac OS, Sokmen M, Doğanay HL, Dinler Doğanay G.

Proteome Sci. 2017 Apr 20;15:7. doi: 10.1186/s12953-017-0114-4. eCollection 2016.

12.

Time-of-Day Dependent Neuronal Injury After Ischemic Stroke: Implication of Circadian Clock Transcriptional Factor Bmal1 and Survival Kinase AKT.

Beker MC, Caglayan B, Yalcin E, Caglayan AB, Turkseven S, Gurel B, Kelestemur T, Sertel E, Sahin Z, Kutlu S, Kilic U, Baykal AT, Kilic E.

Mol Neurobiol. 2018 Mar;55(3):2565-2576. doi: 10.1007/s12035-017-0524-4. Epub 2017 Apr 18.

PMID:
28421530
13.

Clinical applications of MALDI imaging technologies in cancer and neurodegenerative diseases.

Ucal Y, Durer ZA, Atak H, Kadioglu E, Sahin B, Coskun A, Baykal AT, Ozpinar A.

Biochim Biophys Acta Proteins Proteom. 2017 Jul;1865(7):795-816. doi: 10.1016/j.bbapap.2017.01.005. Epub 2017 Jan 10. Review.

PMID:
28087424
14.

Proteomic Analysis of Kidney Preservation Solutions Prior to Renal Transplantation.

Coskun A, Baykal AT, Kazan D, Akgoz M, Senal MO, Berber I, Titiz I, Bilsel G, Kilercik H, Karaosmanoglu K, Cicek M, Yurtsever I, Yazıcı C.

PLoS One. 2016 Dec 30;11(12):e0168755. doi: 10.1371/journal.pone.0168755. eCollection 2016.

15.

Detailed tail proteomic analysis of axolotl (Ambystoma mexicanum) using an mRNA-seq reference database.

Demircan T, Keskin I, Dumlu SN, Aytürk N, Avşaroğlu ME, Akgün E, Öztürk G, Baykal AT.

Proteomics. 2017 Jan;17(1-2). doi: 10.1002/pmic.201600338.

PMID:
27896924
16.

Changes in serum proteins after endotoxin administration in healthy and choline-treated calves.

Yilmaz Z, Eralp Inan O, Kocaturk M, Baykal AT, Hacariz O, Hatipoglu I, Tvarijonaviciute A, Cansev M, Ceron J, Ulus IH.

BMC Vet Res. 2016 Sep 20;12:210. doi: 10.1186/s12917-016-0837-y.

17.

Platelets Proteomic Profiles of Acute Ischemic Stroke Patients.

Cevik O, Baykal AT, Sener A.

PLoS One. 2016 Jun 23;11(6):e0158287. doi: 10.1371/journal.pone.0158287. eCollection 2016.

18.

Toll like receptor 9 antagonism modulates spinal cord neuronal function and survival: Direct versus astrocyte-mediated mechanisms.

Acioglu C, Mirabelli E, Baykal AT, Ni L, Ratnayake A, Heary RF, Elkabes S.

Brain Behav Immun. 2016 Aug;56:310-24. doi: 10.1016/j.bbi.2016.03.027. Epub 2016 Apr 1.

PMID:
27044334
19.

Linking a compound-heterozygous Parkin mutant (Q311R and A371T) to Parkinson's disease by using proteomic and molecular approaches.

Ozgul S, Kasap M, Akpinar G, Kanli A, Güzel N, Karaosmanoglu K, Baykal AT, Iseri P.

Neurochem Int. 2015 Jun-Jul;85-86:1-13. doi: 10.1016/j.neuint.2015.03.007. Epub 2015 Apr 9.

PMID:
25865804
20.

A proteomic analysis of p53-independent induction of apoptosis by bortezomib in 4T1 breast cancer cell line.

Yerlikaya A, Okur E, Baykal AT, Acılan C, Boyacı I, Ulukaya E.

J Proteomics. 2015 Jan 15;113:315-25. doi: 10.1016/j.jprot.2014.09.010. Epub 2014 Oct 8.

PMID:
25305590
21.

Evaluation of apoptotic molecular pathways for smooth muscle cells isolated from thoracic aortic aneurysms in response to oxidized sterols.

Adiguzel Z, Arda N, Kacar O, Serhatli M, Gezer Tas S, Baykal AT, Baysal K, Acilan C.

Mol Biol Rep. 2014 Dec;41(12):7875-84. doi: 10.1007/s11033-014-3681-9. Epub 2014 Sep 30.

PMID:
25266234
22.

Proteomic study of the microdissected aortic media in human thoracic aortic aneurysms.

Serhatli M, Baysal K, Acilan C, Tuncer E, Bekpinar S, Baykal AT.

J Proteome Res. 2014 Nov 7;13(11):5071-80. doi: 10.1021/pr5006586. Epub 2014 Sep 29.

PMID:
25264617
23.

Biochemical and proteomic analysis of a potential anticancer agent: Palladium(II) Saccharinate complex of terpyridine acting through double strand break formation.

Adiguzel Z, Baykal AT, Kacar O, Yilmaz VT, Ulukaya E, Acilan C.

J Proteome Res. 2014 Nov 7;13(11):5240-9. doi: 10.1021/pr5006718. Epub 2014 Sep 11.

PMID:
25210790
24.

Hepatitis B virus e antigen (HBeAg) may have a negative effect on dendritic cell generation.

Hatipoglu I, Ercan D, Acilan C, Basalp A, Durali D, Baykal AT.

Immunobiology. 2014 Dec;219(12):944-9. doi: 10.1016/j.imbio.2014.07.020. Epub 2014 Aug 7.

PMID:
25150150
25.
26.

Identification of ApoA1, HPX and POTEE genes by omic analysis in breast cancer.

Cine N, Baykal AT, Sunnetci D, Canturk Z, Serhatli M, Savli H.

Oncol Rep. 2014 Sep;32(3):1078-86. doi: 10.3892/or.2014.3277. Epub 2014 Jun 23.

PMID:
24969553
27.

Generating a detailed protein profile of Fasciola hepatica during the chronic stage of infection in cattle.

Haçarız O, Baykal AT, Akgün M, Kavak P, Sağıroğlu MŞ, Sayers GP.

Proteomics. 2014 Jun;14(12):1519-30. doi: 10.1002/pmic.201400012. Epub 2014 May 14.

PMID:
24733753
28.

mTor is a signaling hub in cell survival: a mass-spectrometry-based proteomics investigation.

Tang Z, Baykal AT, Gao H, Quezada HC, Zhang H, Bereczki E, Serhatli M, Baykal B, Acioglu C, Wang S, Ioja E, Ji X, Zhang Y, Guan Z, Winblad B, Pei JJ.

J Proteome Res. 2014 May 2;13(5):2433-44. doi: 10.1021/pr500192g. Epub 2014 Apr 14.

PMID:
24694195
29.

The apoptotic actions of platelets in acute ischemic stroke.

Cevik O, Adiguzel Z, Baykal AT, Somay G, Sener A.

Mol Biol Rep. 2013 Dec;40(12):6721-7. doi: 10.1007/s11033-013-2787-9. Epub 2013 Sep 22.

PMID:
24057255
30.

Evaluation of the molecular mechanisms of a palladium(II) saccharinate complex with terpyridine as an anticancer agent.

Kacar O, Adiguzel Z, Yilmaz VT, Cetin Y, Cevatemre B, Arda N, Baykal AT, Ulukaya E, Acilan C.

Anticancer Drugs. 2014 Jan;25(1):17-29. doi: 10.1097/CAD.0b013e328364c6ad.

PMID:
24045367
31.

A novel method to differentiate bovine and porcine gelatins in food products: nanoUPLC-ESI-Q-TOF-MS(E) based data independent acquisition technique to detect marker peptides in gelatin.

Yilmaz MT, Kesmen Z, Baykal B, Sagdic O, Kulen O, Kacar O, Yetim H, Baykal AT.

Food Chem. 2013 Dec 1;141(3):2450-8. doi: 10.1016/j.foodchem.2013.05.096. Epub 2013 May 30.

PMID:
23870980
32.

Identification of differentially expressed proteins in atherosclerotic aorta and effect of vitamin E.

Kaga E, Karademir B, Baykal AT, Ozer NK.

J Proteomics. 2013 Oct 30;92:260-73. doi: 10.1016/j.jprot.2013.06.015. Epub 2013 Jun 21.

PMID:
23796494
33.
34.

Thioredoxin 1-mediated post-translational modifications: reduction, transnitrosylation, denitrosylation, and related proteomics methodologies.

Wu C, Parrott AM, Fu C, Liu T, Marino SM, Gladyshev VN, Jain MR, Baykal AT, Li Q, Oka S, Sadoshima J, Beuve A, Simmons WJ, Li H.

Antioxid Redox Signal. 2011 Nov 1;15(9):2565-604. doi: 10.1089/ars.2010.3831. Epub 2011 Jun 8. Review.

35.

Redox regulatory mechanism of transnitrosylation by thioredoxin.

Wu C, Liu T, Chen W, Oka S, Fu C, Jain MR, Parrott AM, Baykal AT, Sadoshima J, Li H.

Mol Cell Proteomics. 2010 Oct;9(10):2262-75. doi: 10.1074/mcp.M110.000034. Epub 2010 Jul 21.

36.
37.

Snapshot of a reaction intermediate: analysis of benzoylformate decarboxylase in complex with a benzoylphosphonate inhibitor.

Brandt GS, Kneen MM, Chakraborty S, Baykal AT, Nemeria N, Yep A, Ruby DI, Petsko GA, Kenyon GL, McLeish MJ, Jordan F, Ringe D.

Biochemistry. 2009 Apr 21;48(15):3247-57. doi: 10.1021/bi801950k.

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