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Items: 23

1.

Draft Genome Sequence of Haemophilus haemolyticus Strain 16/010 O, Isolated from a Sputum Sample from a Cystic Fibrosis Patient.

Fluit AC, Bayjanov JR, Tunney M, Elborn JS, Rogers MRC, Schürch AC, Ekkelenkamp MB.

Microbiol Resour Announc. 2019 Jun 6;8(23). pii: e00243-19. doi: 10.1128/MRA.00243-19.

2.

Enterococcus faecium genome dynamics during long-term asymptomatic patient gut colonization.

Bayjanov JR, Baan J, Rogers MRC, Troelstra A, Willems RJL, van Schaik W.

Microb Genom. 2019 Jul;5(7). doi: 10.1099/mgen.0.000277. Epub 2019 Jun 5.

3.

Dynamics of colistin and tobramycin resistance among Enterobacter cloacae during prolonged use of selective decontamination of the digestive tract.

Dautzenberg MJD, Bayjanov JR, Leverstein-van Hall MA, Muller AE, Gelinck LBS, Jansen CL, Leyten EMS, Ruys T, Scharringa J, van der Starre RE, Fluit AC, Bonten MJM.

Antimicrob Resist Infect Control. 2018 May 22;7:67. doi: 10.1186/s13756-018-0356-7. eCollection 2018.

4.

Limited influence of hospital wastewater on the microbiome and resistome of wastewater in a community sewerage system.

Buelow E, Bayjanov JR, Majoor E, Willems RJ, Bonten MJ, Schmitt H, van Schaik W.

FEMS Microbiol Ecol. 2018 Jul 1;94(7). doi: 10.1093/femsec/fiy087.

PMID:
29767712
5.

Therapy and Outcome of Staphylococcus aureus Infections of Intracorporeal Ventricular Assist Devices.

Ekkelenkamp MB, Vervoorn MT, Bayjanov JR, Fluit AC, Benaissa-Trouw BJ, Ramjankhan FZ.

Artif Organs. 2018 Oct;42(10):983-991. doi: 10.1111/aor.13159. Epub 2018 Apr 19.

6.

RNA-seq and Tn-seq reveal fitness determinants of vancomycin-resistant Enterococcus faecium during growth in human serum.

Zhang X, de Maat V, Guzmán Prieto AM, Prajsnar TK, Bayjanov JR, de Been M, Rogers MRC, Bonten MJM, Mesnage S, Willems RJL, van Schaik W.

BMC Genomics. 2017 Nov 21;18(1):893. doi: 10.1186/s12864-017-4299-9.

7.

Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjects.

Buelow E, Bello González TDJ, Fuentes S, de Steenhuijsen Piters WAA, Lahti L, Bayjanov JR, Majoor EAM, Braat JC, van Mourik MSM, Oostdijk EAN, Willems RJL, Bonten MJM, van Passel MWJ, Smidt H, van Schaik W.

Microbiome. 2017 Aug 14;5(1):88. doi: 10.1186/s40168-017-0309-z.

8.

The Two-Component System ChtRS Contributes to Chlorhexidine Tolerance in Enterococcus faecium.

Guzmán Prieto AM, Wijngaarden J, Braat JC, Rogers MRC, Majoor E, Brouwer EC, Zhang X, Bayjanov JR, Bonten MJM, Willems RJL, van Schaik W.

Antimicrob Agents Chemother. 2017 Apr 24;61(5). pii: e02122-16. doi: 10.1128/AAC.02122-16. Print 2017 May.

9.

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats.

Martino ME, Bayjanov JR, Caffrey BE, Wels M, Joncour P, Hughes S, Gillet B, Kleerebezem M, van Hijum SA, Leulier F.

Environ Microbiol. 2016 Dec;18(12):4974-4989. doi: 10.1111/1462-2920.13455. Epub 2016 Aug 4.

PMID:
27422487
10.

Resequencing of the Lactobacillus plantarum Strain WJL Genome.

Martino ME, Bayjanov JR, Joncour P, Hughes S, Gillet B, Kleerebezem M, Siezen R, van Hijum SA, Leulier F.

Genome Announc. 2015 Nov 25;3(6). pii: e01382-15. doi: 10.1128/genomeA.01382-15.

11.

Nearly Complete Genome Sequence of Lactobacillus plantarum Strain NIZO2877.

Martino ME, Bayjanov JR, Joncour P, Hughes S, Gillet B, Kleerebezem M, Siezen R, van Hijum SA, Leulier F.

Genome Announc. 2015 Nov 25;3(6). pii: e01370-15. doi: 10.1128/genomeA.01370-15.

12.

Antibiotic-Driven Dysbiosis Mediates Intraluminal Agglutination and Alternative Segregation of Enterococcus faecium from the Intestinal Epithelium.

Hendrickx AP, Top J, Bayjanov JR, Kemperman H, Rogers MR, Paganelli FL, Bonten MJ, Willems RJ.

MBio. 2015 Nov 10;6(6):e01346-15. doi: 10.1128/mBio.01346-15.

13.

Draft Genome Sequence of Lactobacillus plantarum Lp90 Isolated from Wine.

Lamontanara A, Caggianiello G, Orrù L, Capozzi V, Michelotti V, Bayjanov JR, Renckens B, van Hijum SA, Cattivelli L, Spano G.

Genome Announc. 2015 Mar 12;3(2). pii: e00097-15. doi: 10.1128/genomeA.00097-15.

14.

Diversity in robustness of Lactococcus lactis strains during heat stress, oxidative stress, and spray drying stress.

Dijkstra AR, Setyawati MC, Bayjanov JR, Alkema W, van Hijum SA, Bron PA, Hugenholtz J.

Appl Environ Microbiol. 2014 Jan;80(2):603-11. doi: 10.1128/AEM.03434-13. Epub 2013 Nov 8.

15.

Explaining microbial phenotypes on a genomic scale: GWAS for microbes.

Dutilh BE, Backus L, Edwards RA, Wels M, Bayjanov JR, van Hijum SA.

Brief Funct Genomics. 2013 Jul;12(4):366-80. doi: 10.1093/bfgp/elt008. Epub 2013 Apr 26. Review.

16.

Genotype-phenotype matching analysis of 38 Lactococcus lactis strains using random forest methods.

Bayjanov JR, Starrenburg MJ, van der Sijde MR, Siezen RJ, van Hijum SA.

BMC Microbiol. 2013 Mar 26;13:68. doi: 10.1186/1471-2180-13-68.

17.

Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?

Touw WG, Bayjanov JR, Overmars L, Backus L, Boekhorst J, Wels M, van Hijum SA.

Brief Bioinform. 2013 May;14(3):315-26. doi: 10.1093/bib/bbs034. Epub 2012 Jul 10.

18.

PhenoLink--a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains.

Bayjanov JR, Molenaar D, Tzeneva V, Siezen RJ, van Hijum SA.

BMC Genomics. 2012 May 4;13:170. doi: 10.1186/1471-2164-13-170.

19.

Volatile compound fingerprinting of mixed-culture fermentations.

de Bok FA, Janssen PW, Bayjanov JR, Sieuwerts S, Lommen A, van Hylckama Vlieg JE, Molenaar D.

Appl Environ Microbiol. 2011 Sep;77(17):6233-9. doi: 10.1128/AEM.00352-11. Epub 2011 Jul 8.

20.

Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays.

Siezen RJ, Bayjanov JR, Felis GE, van der Sijde MR, Starrenburg M, Molenaar D, Wels M, van Hijum SA, van Hylckama Vlieg JE.

Microb Biotechnol. 2011 May;4(3):383-402. doi: 10.1111/j.1751-7915.2011.00247.x. Epub 2011 Feb 21.

21.

PanCGHweb: a web tool for genotype calling in pangenome CGH data.

Bayjanov JR, Siezen RJ, van Hijum SA.

Bioinformatics. 2010 May 1;26(9):1256-7. doi: 10.1093/bioinformatics/btq103. Epub 2010 Mar 10.

22.

The proteolytic system of lactic acid bacteria revisited: a genomic comparison.

Liu M, Bayjanov JR, Renckens B, Nauta A, Siezen RJ.

BMC Genomics. 2010 Jan 15;11:36. doi: 10.1186/1471-2164-11-36.

23.

PanCGH: a genotype-calling algorithm for pangenome CGH data.

Bayjanov JR, Wels M, Starrenburg M, van Hylckama Vlieg JE, Siezen RJ, Molenaar D.

Bioinformatics. 2009 Feb 1;25(3):309-14. doi: 10.1093/bioinformatics/btn632. Epub 2009 Jan 7.

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