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Items: 1 to 50 of 558

1.

Dynamic interactions of type I cohesin modules fine-tune the structure of the cellulosome of Clostridium thermocellum.

Barth A, Hendrix J, Fried D, Barak Y, Bayer EA, Lamb DC.

Proc Natl Acad Sci U S A. 2018 Nov 14. pii: 201809283. doi: 10.1073/pnas.1809283115. [Epub ahead of print]

PMID:
30429330
2.

REM1.3's phospho-status defines its plasma membrane nanodomain organization and activity in restricting PVX cell-to-cell movement.

Perraki A, Gronnier J, Gouguet P, Boudsocq M, Deroubaix AF, Simon V, German-Retana S, Zipfel C, Bayer E, Mongrand S, Germain V, Legrand A, Habenstein B.

PLoS Pathog. 2018 Nov 12;14(11):e1007378. doi: 10.1371/journal.ppat.1007378. [Epub ahead of print]

3.

Molecular simulations reveal that a short helical loop regulates thermal stability of type I cohesin-dockerin complexes.

Gunnoo M, Cazade PA, Bayer EA, Thompson D.

Phys Chem Chem Phys. 2018 Nov 8. doi: 10.1039/c8cp04800b. [Epub ahead of print]

PMID:
30406775
4.

Crystal structure of afifavidin reveals common features of molecular assemblage in the bacterial dimeric avidins.

Avraham O, Bayer EA, Livnah O.

FEBS J. 2018 Oct 28. doi: 10.1111/febs.14685. [Epub ahead of print]

PMID:
30369031
5.

Past experience shapes sexually dimorphic neuronal wiring through monoaminergic signalling.

Bayer EA, Hobert O.

Nature. 2018 Sep;561(7721):117-121. doi: 10.1038/s41586-018-0452-0. Epub 2018 Aug 27.

PMID:
30150774
6.

Effects of cre1 modification in the white-rot fungus Pleurotus ostreatus PC9: altering substrate preference during biological pretreatment.

Yoav S, Salame TM, Feldman D, Levinson D, Ioelovich M, Morag E, Yarden O, Bayer EA, Hadar Y.

Biotechnol Biofuels. 2018 Jul 27;11:212. doi: 10.1186/s13068-018-1209-6. eCollection 2018.

7.

Regulation of biomass degradation by alternative σ factors in cellulolytic clostridia.

Ortiz de Ora L, Lamed R, Liu YJ, Xu J, Cui Q, Feng Y, Shoham Y, Bayer EA, Muñoz-Gutiérrez I.

Sci Rep. 2018 Jul 23;8(1):11036. doi: 10.1038/s41598-018-29245-5.

8.

Evaluation of Thermal Stability of Cellulosomal Hydrolases and Their Complex Formation.

Kahn A, Galanopoulou AP, Hatzinikolaou DG, Moraïs S, Bayer EA.

Methods Mol Biol. 2018;1796:153-166. doi: 10.1007/978-1-4939-7877-9_12.

PMID:
29856053
9.

Advanced Cloning Tools for Construction of Designer Cellulosomes.

Kahn A, Bayer EA, Moraïs S.

Methods Mol Biol. 2018;1796:135-151. doi: 10.1007/978-1-4939-7877-9_11.

PMID:
29856052
10.

Methods for Discovery of Novel Cellulosomal Cellulases Using Genomics and Biochemical Tools.

Ben-David Y, Dassa B, Bensoussan L, Bayer EA, Moraïs S.

Methods Mol Biol. 2018;1796:67-84. doi: 10.1007/978-1-4939-7877-9_6.

PMID:
29856047
11.

Higher order scaffoldin assembly in Ruminococcus flavefaciens cellulosome is coordinated by a discrete cohesin-dockerin interaction.

Bule P, Pires VMR, Alves VD, Carvalho AL, Prates JAM, Ferreira LMA, Smith SP, Gilbert HJ, Noach I, Bayer EA, Najmudin S, Fontes CMGA.

Sci Rep. 2018 May 3;8(1):6987. doi: 10.1038/s41598-018-25171-8.

12.

Processive Degradation of Crystalline Cellulose by a Multimodular Endoglucanase via a Wirewalking Mode.

Zhang KD, Li W, Wang YF, Zheng YL, Tan FC, Ma XQ, Yao LS, Bayer EA, Wang LS, Li FL.

Biomacromolecules. 2018 May 14;19(5):1686-1696. doi: 10.1021/acs.biomac.8b00340. Epub 2018 Apr 11.

PMID:
29617128
13.

Dual binding in cohesin-dockerin complexes: the energy landscape and the role of short, terminal segments of the dockerin module.

Wojciechowski M, Różycki B, Huy PDQ, Li MS, Bayer EA, Cieplak M.

Sci Rep. 2018 Mar 22;8(1):5051. doi: 10.1038/s41598-018-23380-9.

14.

The cohesin module is a major determinant of cellulosome mechanical stability.

Galera-Prat A, Moraïs S, Vazana Y, Bayer EA, Carrión-Vázquez M.

J Biol Chem. 2018 May 11;293(19):7139-7147. doi: 10.1074/jbc.RA117.000644. Epub 2018 Mar 22.

PMID:
29567834
15.

On the distinct binding modes of expansin and carbohydrate-binding module proteins on crystalline and nanofibrous cellulose: implications for cellulose degradation by designer cellulosomes.

Orłowski A, Artzi L, Cazade PA, Gunnoo M, Bayer EA, Thompson D.

Phys Chem Chem Phys. 2018 Mar 28;20(12):8278-8293. doi: 10.1039/c7cp07764e. Epub 2018 Mar 12.

PMID:
29528340
16.

Assembly of Synthetic Functional Cellulosomal Structures onto the Cell Surface of Lactobacillus plantarum, a Potent Member of the Gut Microbiome.

Stern J, Moraïs S, Ben-David Y, Salama R, Shamshoum M, Lamed R, Shoham Y, Bayer EA, Mizrahi I.

Appl Environ Microbiol. 2018 Apr 2;84(8). pii: e00282-18. doi: 10.1128/AEM.00282-18. Print 2018 Apr 15.

17.

Colocalization and Disposition of Cellulosomes in Clostridium clariflavum as Revealed by Correlative Superresolution Imaging.

Artzi L, Dadosh T, Milrot E, Moraïs S, Levin-Zaidman S, Morag E, Bayer EA.

MBio. 2018 Feb 6;9(1). pii: e00012-18. doi: 10.1128/mBio.00012-18.

18.

STAT1 is a sex-specific tumor suppressor in colitis-associated colorectal cancer.

Crnčec I, Modak M, Gordziel C, Svinka J, Scharf I, Moritsch S, Pathria P, Schlederer M, Kenner L, Timelthaler G, Müller M, Strobl B, Casanova E, Bayer E, Mohr T, Stöckl J, Friedrich K, Eferl R.

Mol Oncol. 2018 Apr;12(4):514-528. doi: 10.1002/1878-0261.12178. Epub 2018 Feb 20.

19.

Structure-function analyses generate novel specificities to assemble the components of multienzyme bacterial cellulosome complexes.

Bule P, Cameron K, Prates JAM, Ferreira LMA, Smith SP, Gilbert HJ, Bayer EA, Najmudin S, Fontes CMGA, Alves VD.

J Biol Chem. 2018 Mar 16;293(11):4201-4212. doi: 10.1074/jbc.RA117.001241. Epub 2018 Jan 24.

PMID:
29367338
20.

Functional and clinical relevance of VLA-4 (CD49d/CD29) in ibrutinib-treated chronic lymphocytic leukemia.

Tissino E, Benedetti D, Herman SEM, Ten Hacken E, Ahn IE, Chaffee KG, Rossi FM, Dal Bo M, Bulian P, Bomben R, Bayer E, Härzschel A, Gutjahr JC, Postorino M, Santinelli E, Ayed A, Zaja F, Chiarenza A, Pozzato G, Chigaev A, Sklar LA, Burger JA, Ferrajoli A, Shanafelt TD, Wiestner A, Del Poeta G, Hartmann TN, Gattei V, Zucchetto A.

J Exp Med. 2018 Feb 5;215(2):681-697. doi: 10.1084/jem.20171288. Epub 2018 Jan 4.

21.

An atlas of Caenorhabditis elegans chemoreceptor expression.

Vidal B, Aghayeva U, Sun H, Wang C, Glenwinkel L, Bayer EA, Hobert O.

PLoS Biol. 2018 Jan 2;16(1):e2004218. doi: 10.1371/journal.pbio.2004218. eCollection 2018 Jan.

22.

Undefined cellulase formulations hinder scientific reproducibility.

Himmel ME, Abbas CA, Baker JO, Bayer EA, Bomble YJ, Brunecky R, Chen X, Felby C, Jeoh T, Kumar R, McCleary BV, Pletschke BI, Tucker MP, Wyman CE, Decker SR.

Biotechnol Biofuels. 2017 Nov 28;10:283. doi: 10.1186/s13068-017-0974-y. eCollection 2017.

23.

Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii.

Mukhopadhya I, Moraïs S, Laverde-Gomez J, Sheridan PO, Walker AW, Kelly W, Klieve AV, Ouwerkerk D, Duncan SH, Louis P, Koropatkin N, Cockburn D, Kibler R, Cooper PJ, Sandoval C, Crost E, Juge N, Bayer EA, Flint HJ.

Environ Microbiol. 2018 Jan;20(1):324-336. doi: 10.1111/1462-2920.14000. Epub 2017 Dec 7.

24.

Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme.

Dassa B, Borovok I, Lombard V, Henrissat B, Lamed R, Bayer EA, Moraïs S.

Microorganisms. 2017 Nov 18;5(4). pii: E74. doi: 10.3390/microorganisms5040074.

25.

Shaping intercellular channels of plasmodesmata: the structure-to-function missing link.

Nicolas WJ, Grison MS, Bayer EM.

J Exp Bot. 2017 Dec 18;69(1):91-103. doi: 10.1093/jxb/erx225.

PMID:
28992136
26.

How does cellulosome composition influence deconstruction of lignocellulosic substrates in Clostridium (Ruminiclostridium) thermocellum DSM 1313?

Yoav S, Barak Y, Shamshoum M, Borovok I, Lamed R, Dassa B, Hadar Y, Morag E, Bayer EA.

Biotechnol Biofuels. 2017 Sep 18;10:222. doi: 10.1186/s13068-017-0909-7. eCollection 2017.

27.

Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system.

Zhivin O, Dassa B, Moraïs S, Utturkar SM, Brown SD, Henrissat B, Lamed R, Bayer EA.

Biotechnol Biofuels. 2017 Sep 7;10:211. doi: 10.1186/s13068-017-0898-6. eCollection 2017.

28.

Modular Organization of the Thermobifida fusca Exoglucanase Cel6B Impacts Cellulose Hydrolysis and Designer Cellulosome Efficiency.

Setter-Lamed E, Moraïs S, Stern J, Lamed R, Bayer EA.

Biotechnol J. 2017 Oct;12(10). doi: 10.1002/biot.201700205. Epub 2017 Sep 28.

PMID:
28901714
29.

From shaping organelles to signalling platforms: the emerging functions of plant ER-PM contact sites.

Bayer EM, Sparkes I, Vanneste S, Rosado A.

Curr Opin Plant Biol. 2017 Dec;40:89-96. doi: 10.1016/j.pbi.2017.08.006. Epub 2017 Sep 1. Review.

PMID:
28865976
30.

Structural basis for plant plasma membrane protein dynamics and organization into functional nanodomains.

Gronnier J, Crowet JM, Habenstein B, Nasir MN, Bayle V, Hosy E, Platre MP, Gouguet P, Raffaele S, Martinez D, Grelard A, Loquet A, Simon-Plas F, Gerbeau-Pissot P, Der C, Bayer EM, Jaillais Y, Deleu M, Germain V, Lins L, Mongrand S.

Elife. 2017 Jul 31;6. pii: e26404. doi: 10.7554/eLife.26404.

31.

An intersectional gene regulatory strategy defines subclass diversity of C. elegans motor neurons.

Kratsios P, Kerk SY, Catela C, Liang J, Vidal B, Bayer EA, Feng W, De La Cruz ED, Croci L, Consalez GG, Mizumoto K, Hobert O.

Elife. 2017 Jul 5;6. pii: e25751. doi: 10.7554/eLife.25751.

32.

The Electrosome: A Surface-Displayed Enzymatic Cascade in a Biofuel Cell's Anode and a High-Density Surface-Displayed Biocathodic Enzyme.

Szczupak A, Aizik D, Moraïs S, Vazana Y, Barak Y, Bayer EA, Alfonta L.

Nanomaterials (Basel). 2017 Jun 23;7(7). pii: E153. doi: 10.3390/nano7070153.

33.

Architecture and permeability of post-cytokinesis plasmodesmata lacking cytoplasmic sleeves.

Nicolas WJ, Grison MS, Trépout S, Gaston A, Fouché M, Cordelières FP, Oparka K, Tilsner J, Brocard L, Bayer EM.

Nat Plants. 2017 Jun 12;3:17082. doi: 10.1038/nplants.2017.82.

PMID:
28604682
34.

* Programmed Platelet-Derived Growth Factor-BB and Bone Morphogenetic Protein-2 Delivery from a Hybrid Calcium Phosphate/Alginate Scaffold.

Bayer EA, Jordan J, Roy A, Gottardi R, Fedorchak MV, Kumta PN, Little SR.

Tissue Eng Part A. 2017 Dec;23(23-24):1382-1393. doi: 10.1089/ten.TEA.2017.0027. Epub 2017 Jun 27.

PMID:
28537482
35.

Carbohydrate Depolymerization by Intricate Cellulosomal Systems.

Stern J, Artzi L, Moraïs S, Fontes CMGA, Bayer EA.

Methods Mol Biol. 2017;1588:93-116. doi: 10.1007/978-1-4939-6899-2_8.

PMID:
28417363
36.

Continually emerging mechanistic complexity of the multi-enzyme cellulosome complex.

Smith SP, Bayer EA, Czjzek M.

Curr Opin Struct Biol. 2017 Jun;44:151-160. doi: 10.1016/j.sbi.2017.03.009. Epub 2017 Apr 6. Review.

PMID:
28390861
37.

Assembly of Ruminococcus flavefaciens cellulosome revealed by structures of two cohesin-dockerin complexes.

Bule P, Alves VD, Israeli-Ruimy V, Carvalho AL, Ferreira LMA, Smith SP, Gilbert HJ, Najmudin S, Bayer EA, Fontes CMGA.

Sci Rep. 2017 Apr 7;7(1):759. doi: 10.1038/s41598-017-00919-w.

38.

Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions.

Israeli-Ruimy V, Bule P, Jindou S, Dassa B, Moraïs S, Borovok I, Barak Y, Slutzki M, Hamberg Y, Cardoso V, Alves VD, Najmudin S, White BA, Flint HJ, Gilbert HJ, Lamed R, Fontes CM, Bayer EA.

Sci Rep. 2017 Feb 10;7:42355. doi: 10.1038/srep42355.

39.

Revisiting the Regulation of the Primary Scaffoldin Gene in Clostridium thermocellum.

Ortiz de Ora L, Muñoz-Gutiérrez I, Bayer EA, Shoham Y, Lamed R, Borovok I.

Appl Environ Microbiol. 2017 Mar 31;83(8). pii: e03088-16. doi: 10.1128/AEM.03088-16. Print 2017 Apr 15.

40.

Sexually Dimorphic Differentiation of a C. elegans Hub Neuron Is Cell Autonomously Controlled by a Conserved Transcription Factor.

Serrano-Saiz E, Oren-Suissa M, Bayer EA, Hobert O.

Curr Biol. 2017 Jan 23;27(2):199-209. doi: 10.1016/j.cub.2016.11.045. Epub 2017 Jan 5.

41.

Mechanical Stability of a High-Affinity Toxin Anchor from the Pathogen Clostridium perfringens.

Milles LF, Bayer EA, Nash MA, Gaub HE.

J Phys Chem B. 2017 Apr 20;121(15):3620-3625. doi: 10.1021/acs.jpcb.6b09593. Epub 2016 Dec 19.

PMID:
27991799
42.

Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides.

Artzi L, Bayer EA, Moraïs S.

Nat Rev Microbiol. 2017 Feb;15(2):83-95. doi: 10.1038/nrmicro.2016.164. Epub 2016 Dec 12. Review.

PMID:
27941816
43.

Diverse specificity of cellulosome attachment to the bacterial cell surface.

Brás JL, Pinheiro BA, Cameron K, Cuskin F, Viegas A, Najmudin S, Bule P, Pires VM, Romão MJ, Bayer EA, Spencer HL, Smith S, Gilbert HJ, Alves VD, Carvalho AL, Fontes CM.

Sci Rep. 2016 Dec 7;6:38292. doi: 10.1038/srep38292.

44.

Single Binding Mode Integration of Hemicellulose-degrading Enzymes via Adaptor Scaffoldins in Ruminococcus flavefaciens Cellulosome.

Bule P, Alves VD, Leitão A, Ferreira LM, Bayer EA, Smith SP, Gilbert HJ, Najmudin S, Fontes CM.

J Biol Chem. 2016 Dec 23;291(52):26658-26669. doi: 10.1074/jbc.M116.761643. Epub 2016 Nov 14.

45.

Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome.

Bensoussan L, Moraïs S, Dassa B, Friedman N, Henrissat B, Lombard V, Bayer EA, Mizrahi I.

Environ Microbiol. 2017 Jan;19(1):185-197. doi: 10.1111/1462-2920.13561. Epub 2016 Oct 28.

PMID:
27712009
46.

Cellulosomes and designer cellulosomes: why toy with Nature?

Bayer EA.

Environ Microbiol Rep. 2017 Feb;9(1):14-15. doi: 10.1111/1758-2229.12489. Epub 2016 Nov 28. No abstract available.

PMID:
27756116
47.

Isolation of Plasmodesmata.

Faulkner C, Bayer EM.

Methods Mol Biol. 2017;1511:187-198.

PMID:
27730612
48.

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

Utturkar SM, Bayer EA, Borovok I, Lamed R, Hurt RA, Land ML, Klingeman DM, Elias D, Zhou J, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Brown SD.

Genome Announc. 2016 Sep 29;4(5). pii: e01043-16. doi: 10.1128/genomeA.01043-16.

50.

Toward combined delignification and saccharification of wheat straw by a laccase-containing designer cellulosome.

Davidi L, Moraïs S, Artzi L, Knop D, Hadar Y, Arfi Y, Bayer EA.

Proc Natl Acad Sci U S A. 2016 Sep 27;113(39):10854-9. doi: 10.1073/pnas.1608012113. Epub 2016 Sep 12.

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