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Items: 43

1.

Nonribosomal peptides in fungal cell factories: from genome mining to optimized heterologous production.

Vassaux A, Meunier L, Vandenbol M, Baurain D, Fickers P, Jacques P, Leclère V.

Biotechnol Adv. 2019 Sep 10:107449. doi: 10.1016/j.biotechadv.2019.107449. [Epub ahead of print] Review.

PMID:
31518630
2.

Cyanobacteria evolution: Insight from the fossil record.

Demoulin CF, Lara YJ, Cornet L, François C, Baurain D, Wilmotte A, Javaux EJ.

Free Radic Biol Med. 2019 May 9. pii: S0891-5849(18)32484-5. doi: 10.1016/j.freeradbiomed.2019.05.007. [Epub ahead of print] Review.

3.

Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences.

Di Franco A, Poujol R, Baurain D, Philippe H.

BMC Evol Biol. 2019 Jan 11;19(1):21. doi: 10.1186/s12862-019-1350-2.

4.

Metagenomic assembly of new (sub)polar Cyanobacteria and their associated microbiome from non-axenic cultures.

Cornet L, Bertrand AR, Hanikenne M, Javaux EJ, Wilmotte A, Baurain D.

Microb Genom. 2018 Sep;4(9). doi: 10.1099/mgen.0.000212. Epub 2018 Aug 23.

5.

Consensus assessment of the contamination level of publicly available cyanobacterial genomes.

Cornet L, Meunier L, Van Vlierberghe M, Léonard RR, Durieu B, Lara Y, Misztak A, Sirjacobs D, Javaux EJ, Philippe H, Wilmotte A, Baurain D.

PLoS One. 2018 Jul 25;13(7):e0200323. doi: 10.1371/journal.pone.0200323. eCollection 2018.

6.

A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria).

Cornet L, Wilmotte A, Javaux EJ, Baurain D.

BMC Res Notes. 2018 Jul 3;11(1):435. doi: 10.1186/s13104-018-3543-y.

7.

Complete Genome Sequence of Streptomyces lunaelactis MM109T, Isolated from Cave Moonmilk Deposits.

Naômé A, Maciejewska M, Calusinska M, Martinet L, Anderssen S, Adam D, Tenconi E, Deflandre B, Coppieters W, Karim L, Hanikenne M, Baurain D, Delfosse P, van Wezel GP, Rigali S.

Genome Announc. 2018 May 24;6(21). pii: e00435-18. doi: 10.1128/genomeA.00435-18.

8.

Isolation, Characterization, and Antibacterial Activity of Hard-to-Culture Actinobacteria from Cave Moonmilk Deposits.

Adam D, Maciejewska M, Naômé A, Martinet L, Coppieters W, Karim L, Baurain D, Rigali S.

Antibiotics (Basel). 2018 Mar 22;7(2). pii: E28. doi: 10.3390/antibiotics7020028.

9.

High-Throughput Sequencing Analysis of the Actinobacterial Spatial Diversity in Moonmilk Deposits.

Maciejewska M, Całusińska M, Cornet L, Adam D, Pessi IS, Malchair S, Delfosse P, Baurain D, Barton HA, Carnol M, Rigali S.

Antibiotics (Basel). 2018 Mar 21;7(2). pii: E27. doi: 10.3390/antibiotics7020027.

10.

Number of inadvertent RNA targets for morpholino knockdown in Danio rerio is largely underestimated: evidence from the study of Ser/Arg-rich splicing factors.

Joris M, Schloesser M, Baurain D, Hanikenne M, Muller M, Motte P.

Nucleic Acids Res. 2017 Sep 19;45(16):9547-9557. doi: 10.1093/nar/gkx638.

11.

Phylotranscriptomic consolidation of the jawed vertebrate timetree.

Irisarri I, Baurain D, Brinkmann H, Delsuc F, Sire JY, Kupfer A, Petersen J, Jarek M, Meyer A, Vences M, Philippe H.

Nat Ecol Evol. 2017 Sep;1(9):1370-1378. doi: 10.1038/s41559-017-0240-5. Epub 2017 Jul 24.

12.

Inferring the shallow phylogeny of true salamanders (Salamandra) by multiple phylogenomic approaches.

Rodríguez A, Burgon JD, Lyra M, Irisarri I, Baurain D, Blaustein L, Göçmen B, Künzel S, Mable BK, Nolte AW, Veith M, Steinfartz S, Elmer KR, Philippe H, Vences M.

Mol Phylogenet Evol. 2017 Oct;115:16-26. doi: 10.1016/j.ympev.2017.07.009. Epub 2017 Jul 14.

13.

Assessment of the Potential Role of Streptomyces in Cave Moonmilk Formation.

Maciejewska M, Adam D, Naômé A, Martinet L, Tenconi E, Całusińska M, Delfosse P, Hanikenne M, Baurain D, Compère P, Carnol M, Barton HA, Rigali S.

Front Microbiol. 2017 Jun 29;8:1181. doi: 10.3389/fmicb.2017.01181. eCollection 2017.

14.

Human Chitotriosidase: Catalytic Domain or Carbohydrate Binding Module, Who's Leading HCHT's Biological Function.

Crasson O, Courtade G, Léonard RR, Aachmann FL, Legrand F, Parente R, Baurain D, Galleni M, Sørlie M, Vandevenne M.

Sci Rep. 2017 Jun 5;7(1):2768. doi: 10.1038/s41598-017-02382-z.

15.

A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals.

Simion P, Philippe H, Baurain D, Jager M, Richter DJ, Di Franco A, Roure B, Satoh N, Quéinnec É, Ereskovsky A, Lapébie P, Corre E, Delsuc F, King N, Wörheide G, Manuel M.

Curr Biol. 2017 Apr 3;27(7):958-967. doi: 10.1016/j.cub.2017.02.031. Epub 2017 Mar 16.

16.

Draft Genome Sequence of the Axenic Strain Phormidesmispriestleyi ULC007, a Cyanobacterium Isolated from Lake Bruehwiler (Larsemann Hills, Antarctica).

Lara Y, Durieu B, Cornet L, Verlaine O, Rippka R, Pessi IS, Misztak A, Joris B, Javaux EJ, Baurain D, Wilmotte A.

Genome Announc. 2017 Feb 16;5(7). pii: e01546-16. doi: 10.1128/genomeA.01546-16.

17.

High-throughput sequencing analysis reveals the genetic diversity of different regions of the murine norovirus genome during in vitro replication.

Mauroy A, Taminiau B, Nezer C, Ghurburrun E, Baurain D, Daube G, Thiry E.

Arch Virol. 2017 Apr;162(4):1019-1023. doi: 10.1007/s00705-016-3179-y. Epub 2016 Dec 9.

PMID:
27942973
18.

A Phenotypic and Genotypic Analysis of the Antimicrobial Potential of Cultivable Streptomyces Isolated from Cave Moonmilk Deposits.

Maciejewska M, Adam D, Martinet L, Naômé A, Całusińska M, Delfosse P, Carnol M, Barton HA, Hayette MP, Smargiasso N, De Pauw E, Hanikenne M, Baurain D, Rigali S.

Front Microbiol. 2016 Sep 21;7:1455. eCollection 2016.

19.

Coding and noncoding variants in HFM1, MLH3, MSH4, MSH5, RNF212, and RNF212B affect recombination rate in cattle.

Kadri NK, Harland C, Faux P, Cambisano N, Karim L, Coppieters W, Fritz S, Mullaart E, Baurain D, Boichard D, Spelman R, Charlier C, Georges M, Druet T.

Genome Res. 2016 Oct;26(10):1323-1332. Epub 2016 Aug 11.

20.

On the use of high-throughput sequencing for the study of cyanobacterial diversity in Antarctic aquatic mats.

Pessi IS, Maalouf Pde C, Laughinghouse HD 4th, Baurain D, Wilmotte A.

J Phycol. 2016 Jun;52(3):356-68. doi: 10.1111/jpy.12399. Epub 2016 Apr 27.

PMID:
27273529
21.

Rooting the tree of life: the phylogenetic jury is still out.

Gouy R, Baurain D, Philippe H.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140329. doi: 10.1098/rstb.2014.0329. Review.

22.

Origin and evolution of metal P-type ATPases in Plantae (Archaeplastida).

Hanikenne M, Baurain D.

Front Plant Sci. 2014 Jan 7;4:544. doi: 10.3389/fpls.2013.00544. eCollection 2013.

23.

Chromera velia, endosymbioses and the rhodoplex hypothesis--plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages).

Petersen J, Ludewig AK, Michael V, Bunk B, Jarek M, Baurain D, Brinkmann H.

Genome Biol Evol. 2014 Mar;6(3):666-84. doi: 10.1093/gbe/evu043.

24.

The mitochondrial respiratory chain of the secondary green alga Euglena gracilis shares many additional subunits with parasitic Trypanosomatidae.

Perez E, Lapaille M, Degand H, Cilibrasi L, Villavicencio-Queijeiro A, Morsomme P, González-Halphen D, Field MC, Remacle C, Baurain D, Cardol P.

Mitochondrion. 2014 Nov;19 Pt B:338-49. doi: 10.1016/j.mito.2014.02.001. Epub 2014 Feb 21.

25.

The African coelacanth genome provides insights into tetrapod evolution.

Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, Gerdol M, Aken B, Biscotti MA, Barucca M, Baurain D, Berlin AM, Blatch GL, Buonocore F, Burmester T, Campbell MS, Canapa A, Cannon JP, Christoffels A, De Moro G, Edkins AL, Fan L, Fausto AM, Feiner N, Forconi M, Gamieldien J, Gnerre S, Gnirke A, Goldstone JV, Haerty W, Hahn ME, Hesse U, Hoffmann S, Johnson J, Karchner SI, Kuraku S, Lara M, Levin JZ, Litman GW, Mauceli E, Miyake T, Mueller MG, Nelson DR, Nitsche A, Olmo E, Ota T, Pallavicini A, Panji S, Picone B, Ponting CP, Prohaska SJ, Przybylski D, Saha NR, Ravi V, Ribeiro FJ, Sauka-Spengler T, Scapigliati G, Searle SM, Sharpe T, Simakov O, Stadler PF, Stegeman JJ, Sumiyama K, Tabbaa D, Tafer H, Turner-Maier J, van Heusden P, White S, Williams L, Yandell M, Brinkmann H, Volff JN, Tabin CJ, Shubin N, Schartl M, Jaffe DB, Postlethwait JH, Venkatesh B, Di Palma F, Lander ES, Meyer A, Lindblad-Toh K.

Nature. 2013 Apr 18;496(7445):311-6. doi: 10.1038/nature12027.

26.

Impact of missing data on phylogenies inferred from empirical phylogenomic data sets.

Roure B, Baurain D, Philippe H.

Mol Biol Evol. 2013 Jan;30(1):197-214. doi: 10.1093/molbev/mss208. Epub 2012 Aug 28.

PMID:
22930702
27.

A single ancient origin for prototypical serine/arginine-rich splicing factors.

Califice S, Baurain D, Hanikenne M, Motte P.

Plant Physiol. 2012 Feb;158(2):546-60. doi: 10.1104/pp.111.189019. Epub 2011 Dec 12.

28.

Variants modulating the expression of a chromosome domain encompassing PLAG1 influence bovine stature.

Karim L, Takeda H, Lin L, Druet T, Arias JA, Baurain D, Cambisano N, Davis SR, Farnir F, Grisart B, Harris BL, Keehan MD, Littlejohn MD, Spelman RJ, Georges M, Coppieters W.

Nat Genet. 2011 May;43(5):405-13. doi: 10.1038/ng.814. Epub 2011 Apr 24.

PMID:
21516082
29.

Resolving difficult phylogenetic questions: why more sequences are not enough.

Philippe H, Brinkmann H, Lavrov DV, Littlewood DT, Manuel M, Wörheide G, Baurain D.

PLoS Biol. 2011 Mar;9(3):e1000602. doi: 10.1371/journal.pbio.1000602. Epub 2011 Mar 15. No abstract available.

30.

Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing.

Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D.

Genome Res. 2010 Dec;20(12):1651-62. doi: 10.1101/gr.108787.110. Epub 2010 Oct 13.

31.

Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles.

Baurain D, Brinkmann H, Petersen J, Rodríguez-Ezpeleta N, Stechmann A, Demoulin V, Roger AJ, Burger G, Lang BF, Philippe H.

Mol Biol Evol. 2010 Jul;27(7):1698-709. doi: 10.1093/molbev/msq059. Epub 2010 Mar 1.

PMID:
20194427
32.

Atypical subunit composition of the chlorophycean mitochondrial F1FO-ATP synthase and role of Asa7 protein in stability and oligomycin resistance of the enzyme.

Lapaille M, Escobar-Ramírez A, Degand H, Baurain D, Rodríguez-Salinas E, Coosemans N, Boutry M, Gonzalez-Halphen D, Remacle C, Cardol P.

Mol Biol Evol. 2010 Jul;27(7):1630-44. doi: 10.1093/molbev/msq049. Epub 2010 Feb 15.

PMID:
20156838
33.

Patrocles: a database of polymorphic miRNA-mediated gene regulation in vertebrates.

Hiard S, Charlier C, Coppieters W, Georges M, Baurain D.

Nucleic Acids Res. 2010 Jan;38(Database issue):D640-51. doi: 10.1093/nar/gkp926. Epub 2009 Nov 11.

35.

Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors?

Baurain D, Brinkmann H, Philippe H.

Mol Biol Evol. 2007 Jan;24(1):6-9. Epub 2006 Sep 29.

PMID:
17012374
36.

[Vertebrate origins: does the tunic make the man?].

Delsuc F, Baurain D, Philippe H.

Med Sci (Paris). 2006 Aug-Sep;22(8-9):688-90. French. No abstract available.

37.

The mitochondrial oxidative phosphorylation proteome of Chlamydomonas reinhardtii deduced from the Genome Sequencing Project.

Cardol P, González-Halphen D, Reyes-Prieto A, Baurain D, Matagne RF, Remacle C.

Plant Physiol. 2005 Feb;137(2):447-59. Review. No abstract available.

38.

A comparative inventory of metal transporters in the green alga Chlamydomonas reinhardtii and the red alga Cyanidioschizon merolae.

Hanikenne M, Krämer U, Demoulin V, Baurain D.

Plant Physiol. 2005 Feb;137(2):428-46. Review. No abstract available.

42.

Characterization of two genes encoding the mitochondrial alternative oxidase in Chlamydomonas reinhardtii.

Dinant M, Baurain D, Coosemans N, Joris B, Matagne RF.

Curr Genet. 2001 Apr;39(2):101-8.

43.

Arthrospira ('Spirulina') strains from four continents are resolved into only two clusters, based on amplified ribosomal DNA restriction analysis of the internally transcribed spacer.

Scheldeman P, Baurain D, Bouhy R, Scott M, Mühling M, Whitton BA, Belay A, Wilmotte A.

FEMS Microbiol Lett. 1999 Mar 15;172(2):213-22.

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