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Items: 1 to 50 of 60

1.

A Novel Tool for the Generation of Conditional Knockouts To Study Gene Function across the Plasmodium falciparum Life Cycle.

Tibúrcio M, Yang ASP, Yahata K, Suárez-Cortés P, Belda H, Baumgarten S, van de Vegte-Bolmer M, van Gemert GJ, van Waardenburg Y, Levashina EA, Sauerwein RW, Treeck M.

MBio. 2019 Sep 17;10(5). pii: e01170-19. doi: 10.1128/mBio.01170-19.

2.

Transcriptome-wide dynamics of extensive m6A mRNA methylation during Plasmodium falciparum blood-stage development.

Baumgarten S, Bryant JM, Sinha A, Reyser T, Preiser PR, Dedon PC, Scherf A.

Nat Microbiol. 2019 Aug 5. doi: 10.1038/s41564-019-0521-7. [Epub ahead of print]

PMID:
31384004
3.

Tubal Ligation and Age at Natural Menopause.

Ainsworth AJ, Baumgarten SC, Bakkum-Gamez JN, Vachon CM, Weaver AL, Laughlin-Tommaso SK.

Obstet Gynecol. 2019 Jun;133(6):1247-1254. doi: 10.1097/AOG.0000000000003266.

PMID:
31135741
4.

Tubal Ligation and Age at Natural Menopause.

Ainsworth AJ, Baumgarten SC, Bakkum-Gamez JN, Vachon CM, Weaver AL, Laughlin-Tommaso SK.

Obstet Gynecol. 2019 May 9. doi: 10.1097/AOG.0000000000003266. [Epub ahead of print]

PMID:
31083119
5.

CRISPR in Parasitology: Not Exactly Cut and Dried!

Bryant JM, Baumgarten S, Glover L, Hutchinson S, Rachidi N.

Trends Parasitol. 2019 Jun;35(6):409-422. doi: 10.1016/j.pt.2019.03.004. Epub 2019 Apr 18. Review.

6.

Response to letter to the editor Re: Baumgarten et al.: Vitrectomy with and without encircling band for pseudophakic retinal detachment with inferior breaks: VIPER study report no. 3. Graefes Arch Clin Exp Ophthalmol. 2018 Nov;256(11):2069-2073. doi: 10.1007/s00417-018-4106-6. Epub 2018 Aug 23.

Baumgarten S, Rössler G, Walter P, Mazinani B; retina.net VIPER Study Group.

Graefes Arch Clin Exp Ophthalmol. 2019 Apr;257(4):845-846. doi: 10.1007/s00417-019-04269-3. Epub 2019 Feb 19. No abstract available.

PMID:
30783782
7.

Disruption of the RNA exosome reveals the hidden face of the malaria parasite transcriptome.

Droll D, Wei G, Guo G, Fan Y, Baumgarten S, Zhou Y, Xiao Y, Scherf A, Zhang Q.

RNA Biol. 2018;15(9):1206-1214. doi: 10.1080/15476286.2018.1517014. Epub 2018 Sep 20.

PMID:
30235972
8.

Vitrectomy with and without encircling band for pseudophakic retinal detachment with inferior breaks: VIPER Study Report No. 3.

Baumgarten S, Schiller P, Hellmich M, Walter P, Agostini H, Junker B, Helbig H, Lommatzsch A, Mazinani B; VIPER Study Group.

Graefes Arch Clin Exp Ophthalmol. 2018 Nov;256(11):2069-2073. doi: 10.1007/s00417-018-4106-6. Epub 2018 Aug 23.

9.

Fully automated sample preparation procedure to measure drugs of abuse in plasma by liquid chromatography tandem mass spectrometry.

Robin T, Barnes A, Dulaurent S, Loftus N, Baumgarten S, Moreau S, Marquet P, El Balkhi S, Saint-Marcoux F.

Anal Bioanal Chem. 2018 Aug;410(20):5071-5083. doi: 10.1007/s00216-018-1159-7. Epub 2018 Jun 8.

PMID:
29947899
10.

A Specific PfEMP1 Is Expressed in P. falciparum Sporozoites and Plays a Role in Hepatocyte Infection.

Zanghì G, Vembar SS, Baumgarten S, Ding S, Guizetti J, Bryant JM, Mattei D, Jensen ATR, Rénia L, Goh YS, Sauerwein R, Hermsen CC, Franetich JF, Bordessoulles M, Silvie O, Soulard V, Scatton O, Chen P, Mecheri S, Mazier D, Scherf A.

Cell Rep. 2018 Mar 13;22(11):2951-2963. doi: 10.1016/j.celrep.2018.02.075.

11.

De Novo Genome Assembly of a Plasmodium falciparum NF54 Clone Using Single-Molecule Real-Time Sequencing.

Bryant JM, Baumgarten S, Lorthiois A, Scheidig-Benatar C, Claës A, Scherf A.

Genome Announc. 2018 Feb 1;6(5). pii: e01479-17. doi: 10.1128/genomeA.01479-17.

12.

Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals.

Voolstra CR, Li Y, Liew YJ, Baumgarten S, Zoccola D, Flot JF, Tambutté S, Allemand D, Aranda M.

Sci Rep. 2017 Dec 14;7(1):17583. doi: 10.1038/s41598-017-17484-x.

13.

Evidence for miRNA-mediated modulation of the host transcriptome in cnidarian-dinoflagellate symbiosis.

Baumgarten S, Cziesielski MJ, Thomas L, Michell CT, Esherick LY, Pringle JR, Aranda M, Voolstra CR.

Mol Ecol. 2018 Jan;27(2):403-418. doi: 10.1111/mec.14452. Epub 2017 Dec 23.

PMID:
29218749
14.

Modifications at K31 on the lateral surface of histone H4 contribute to genome structure and expression in apicomplexan parasites.

Sindikubwabo F, Ding S, Hussain T, Ortet P, Barakat M, Baumgarten S, Cannella D, Palencia A, Bougdour A, Belmudes L, Couté Y, Tardieux I, Botté CY, Scherf A, Hakimi MA.

Elife. 2017 Nov 4;6. pii: e29391. doi: 10.7554/eLife.29391.

15.

Transcriptomes and expression profiling of deep-sea corals from the Red Sea provide insight into the biology of azooxanthellate corals.

Yum LK, Baumgarten S, Röthig T, Roder C, Roik A, Michell C, Voolstra CR.

Sci Rep. 2017 Jul 25;7(1):6442. doi: 10.1038/s41598-017-05572-x.

16.

CRISPR/Cas9 Genome Editing Reveals That the Intron Is Not Essential for var2csa Gene Activation or Silencing in Plasmodium falciparum.

Bryant JM, Regnault C, Scheidig-Benatar C, Baumgarten S, Guizetti J, Scherf A.

MBio. 2017 Jul 11;8(4). pii: e00729-17. doi: 10.1128/mBio.00729-17.

17.

IGF1R Expression in Ovarian Granulosa Cells Is Essential for Steroidogenesis, Follicle Survival, and Fertility in Female Mice.

Baumgarten SC, Armouti M, Ko C, Stocco C.

Endocrinology. 2017 Jul 1;158(7):2309-2318. doi: 10.1210/en.2017-00146.

18.

Condition-specific RNA editing in the coral symbiont Symbiodinium microadriaticum.

Liew YJ, Li Y, Baumgarten S, Voolstra CR, Aranda M.

PLoS Genet. 2017 Feb 28;13(2):e1006619. doi: 10.1371/journal.pgen.1006619. eCollection 2017 Feb.

19.

Genome-wide interactions between FSH and insulin-like growth factors in the regulation of human granulosa cell differentiation.

Stocco C, Baumgarten SC, Armouti M, Fierro MA, Winston NJ, Scoccia B, Zamah AM.

Hum Reprod. 2017 Apr 1;32(4):905-914. doi: 10.1093/humrep/dex002.

20.

Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle.

Aranda M, Li Y, Liew YJ, Baumgarten S, Simakov O, Wilson MC, Piel J, Ashoor H, Bougouffa S, Bajic VB, Ryu T, Ravasi T, Bayer T, Micklem G, Kim H, Bhak J, LaJeunesse TC, Voolstra CR.

Sci Rep. 2016 Dec 22;6:39734. doi: 10.1038/srep39734.

21.

Vitrectomy with and without encircling band for pseudophakic retinal detachment: VIPER Study Report No 2-main results.

Walter P, Hellmich M, Baumgarten S, Schiller P, Limburg E, Agostini H, Pielen A, Helbig H, Lommatzsch A, Rössler G, Mazinani B; VIPER Study Group.

Br J Ophthalmol. 2017 Jun;101(6):712-718. doi: 10.1136/bjophthalmol-2016-309240. Epub 2016 Sep 8.

22.

Aiptasia sp. larvae as a model to reveal mechanisms of symbiont selection in cnidarians.

Wolfowicz I, Baumgarten S, Voss PA, Hambleton EA, Voolstra CR, Hatta M, Guse A.

Sci Rep. 2016 Sep 1;6:32366. doi: 10.1038/srep32366.

23.

Comparative genomics explains the evolutionary success of reef-forming corals.

Bhattacharya D, Agrawal S, Aranda M, Baumgarten S, Belcaid M, Drake JL, Erwin D, Foret S, Gates RD, Gruber DF, Kamel B, Lesser MP, Levy O, Liew YJ, MacManes M, Mass T, Medina M, Mehr S, Meyer E, Price DC, Putnam HM, Qiu H, Shinzato C, Shoguchi E, Stokes AJ, Tambutté S, Tchernov D, Voolstra CR, Wagner N, Walker CW, Weber AP, Weis V, Zelzion E, Zoccola D, Falkowski PG.

Elife. 2016 May 24;5. pii: e13288. doi: 10.7554/eLife.13288.

24.

Hologenome analysis of two marine sponges with different microbiomes.

Ryu T, Seridi L, Moitinho-Silva L, Oates M, Liew YJ, Mavromatis C, Wang X, Haywood A, Lafi FF, Kupresanin M, Sougrat R, Alzahrani MA, Giles E, Ghosheh Y, Schunter C, Baumgarten S, Berumen ML, Gao X, Aranda M, Foret S, Gough J, Voolstra CR, Hentschel U, Ravasi T.

BMC Genomics. 2016 Feb 29;17:158. doi: 10.1186/s12864-016-2501-0.

25.

Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the Genus Symbiodinium.

Parkinson JE, Baumgarten S, Michell CT, Baums IB, LaJeunesse TC, Voolstra CR.

Genome Biol Evol. 2016 Feb 11;8(3):665-80. doi: 10.1093/gbe/evw019.

26.

GATA4 and GATA6 Knockdown During Luteinization Inhibits Progesterone Production and Gonadotropin Responsiveness in the Corpus Luteum of Female Mice.

Convissar SM, Bennett J, Baumgarten SC, Lydon JP, DeMayo FJ, Stocco C.

Biol Reprod. 2015 Dec;93(6):133. doi: 10.1095/biolreprod.115.132969. Epub 2015 Oct 28.

27.

The genome of Aiptasia, a sea anemone model for coral symbiosis.

Baumgarten S, Simakov O, Esherick LY, Liew YJ, Lehnert EM, Michell CT, Li Y, Hambleton EA, Guse A, Oates ME, Gough J, Weis VM, Aranda M, Pringle JR, Voolstra CR.

Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):11893-8. doi: 10.1073/pnas.1513318112. Epub 2015 Aug 31.

28.

Vitrectomy with or without encircling band for pseudophakic retinal detachment: a multi-centre, three-arm, randomised clinical trial. VIPER Study Report No. 1--design and enrolment.

Mazinani B, Baumgarten S, Schiller P, Agostini H, Helbig H, Limburg E, Hellmich M, Walter P; VIPER Study Group.

Br J Ophthalmol. 2016 Mar;100(3):405-10. doi: 10.1136/bjophthalmol-2015-306732. Epub 2015 Jul 21.

29.

FSH Regulates IGF-2 Expression in Human Granulosa Cells in an AKT-Dependent Manner.

Baumgarten SC, Convissar SM, Zamah AM, Fierro MA, Winston NJ, Scoccia B, Stocco C.

J Clin Endocrinol Metab. 2015 Aug;100(8):E1046-55. doi: 10.1210/jc.2015-1504. Epub 2015 Jun 12.

30.

IGF1R signaling is necessary for FSH-induced activation of AKT and differentiation of human Cumulus granulosa cells.

Baumgarten SC, Convissar SM, Fierro MA, Winston NJ, Scoccia B, Stocco C.

J Clin Endocrinol Metab. 2014 Aug;99(8):2995-3004. doi: 10.1210/jc.2014-1139. Epub 2014 May 21.

31.

Identification of microRNAs in the coral Stylophora pistillata.

Liew YJ, Aranda M, Carr A, Baumgarten S, Zoccola D, Tambutté S, Allemand D, Micklem G, Voolstra CR.

PLoS One. 2014 Mar 21;9(3):e91101. doi: 10.1371/journal.pone.0091101. eCollection 2014.

32.

Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals.

Baumgarten S, Bayer T, Aranda M, Liew YJ, Carr A, Micklem G, Voolstra CR.

BMC Genomics. 2013 Oct 12;14:704. doi: 10.1186/1471-2164-14-704.

33.
34.

Testosterone-dependent interaction between androgen receptor and aryl hydrocarbon receptor induces liver receptor homolog 1 expression in rat granulosa cells.

Wu Y, Baumgarten SC, Zhou P, Stocco C.

Mol Cell Biol. 2013 Aug;33(15):2817-28. doi: 10.1128/MCB.00011-13. Epub 2013 May 20.

35.

IGF-I signaling is essential for FSH stimulation of AKT and steroidogenic genes in granulosa cells.

Zhou P, Baumgarten SC, Wu Y, Bennett J, Winston N, Hirshfeld-Cytron J, Stocco C.

Mol Endocrinol. 2013 Mar;27(3):511-23. doi: 10.1210/me.2012-1307. Epub 2013 Jan 22.

36.

Confirmation of drug delivery after liver chemoembolization: direct tissue doxorubicin measurement by UHPLC-MS-MS.

Baumgarten S, Gaba RC, van Breemen RB.

Biomed Chromatogr. 2012 Dec;26(12):1529-33. doi: 10.1002/bmc.2727. Epub 2012 Mar 27.

37.

Minireview: Inflammation: an instigator of more aggressive estrogen receptor (ER) positive breast cancers.

Baumgarten SC, Frasor J.

Mol Endocrinol. 2012 Mar;26(3):360-71. doi: 10.1210/me.2011-1302. Epub 2012 Feb 2. Review.

38.

Two-dimensional microrheology of freely suspended liquid crystal films.

Eremin A, Baumgarten S, Harth K, Stannarius R, Nguyen ZH, Goldfain A, Park CS, Maclennan JE, Glaser MA, Clark NA.

Phys Rev Lett. 2011 Dec 23;107(26):268301. Epub 2011 Dec 22.

PMID:
22243186
39.

Ethiodized oil uptake does not predict doxorubicin drug delivery after chemoembolization in VX2 liver tumors.

Gaba RC, Baumgarten S, Omene BO, van Breemen RB, Garcia KD, Larson AC, Omary RA.

J Vasc Interv Radiol. 2012 Feb;23(2):265-73. doi: 10.1016/j.jvir.2011.10.022. Epub 2011 Dec 16.

PMID:
22178040
40.

CBP mediates NF-κB-dependent histone acetylation and estrogen receptor recruitment to an estrogen response element in the BIRC3 promoter.

Pradhan M, Baumgarten SC, Bembinster LA, Frasor J.

Mol Cell Biol. 2012 Jan;32(2):569-75. doi: 10.1128/MCB.05869-11. Epub 2011 Nov 14.

41.

Tyrosine nitration limits stretch-induced CD40 expression and disconnects CD40 signaling in human endothelial cells.

Wagner AH, Hildebrandt A, Baumgarten S, Jungmann A, Müller OJ, Sharov VS, Schöneich C, Hecker M.

Blood. 2011 Sep 29;118(13):3734-42. doi: 10.1182/blood-2010-11-320259. Epub 2011 Aug 10.

PMID:
21832282
42.

Proinflammatory cytokines enhance estrogen-dependent expression of the multidrug transporter gene ABCG2 through estrogen receptor and NF{kappa}B cooperativity at adjacent response elements.

Pradhan M, Bembinster LA, Baumgarten SC, Frasor J.

J Biol Chem. 2010 Oct 8;285(41):31100-6. doi: 10.1074/jbc.M110.155309. Epub 2010 Aug 12.

43.

Sinus grafting with mineralized allograft and staged implant placement.

Baumgarten S.

Quintessence Int. 2010 Mar;41(3):197-202.

PMID:
20213019
44.

Photocrosslinking of a novel alpha,omega-unsaturated copolyamide: mass spectrometric study on model compounds with benzophenone as photoinitiator.

Mintsa MN, Lecamp L, Loutelier-Bourhis C, Lange CM, Baumgarten S, Bunel C.

Rapid Commun Mass Spectrom. 2009 Dec;23(23):3813-23. doi: 10.1002/rcm.4295.

PMID:
19899186
45.

Use of heparin in women with early and late miscarriages with and without thrombophilia.

Monien S, Kadecki O, Baumgarten S, Salama A, Dörner T, Kiesewetter H.

Clin Appl Thromb Hemost. 2009 Dec;15(6):636-44. doi: 10.1177/1076029609335501. Epub 2009 Aug 9.

PMID:
19666941
46.

Structure of flexible filamentous plant viruses.

Kendall A, McDonald M, Bian W, Bowles T, Baumgarten SC, Shi J, Stewart PL, Bullitt E, Gore D, Irving TC, Havens WM, Ghabrial SA, Wall JS, Stubbs G.

J Virol. 2008 Oct;82(19):9546-54. doi: 10.1128/JVI.00895-08. Epub 2008 Jul 30.

47.

Evaluation of advanced treatment technologies for the elimination of pharmaceutical compounds.

Baumgarten S, Schröder HF, Charwath C, Lange M, Beier S, Pinnekamp J.

Water Sci Technol. 2007;56(5):1-8.

PMID:
17881831
48.

Performance of membrane bioreactors used for the treatment of wastewater from the chemical and textile industries.

Baumgarten S, Schröder HF, Pinnekamp J.

Water Sci Technol. 2006;53(3):61-7.

PMID:
16605018
49.

Saponins from Hacquetia epipactis.

Burczyk J, Reznicek G, Baumgarten S, Hugh-Bloch M, Jurenitsch J, Schröder H, Werz U, Haslinger E.

Phytochemistry. 1995 May;39(1):195-8.

PMID:
7786486
50.

The computerized dental office of the future.

Stikeleather J, Hensel JS, Baumgarten SA.

Dent Clin North Am. 1988 Jan;32(1):173-90.

PMID:
3276567

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