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Items: 19


Predicting network modules of cell cycle regulators using relative protein abundance statistics.

Oguz C, Watson LT, Baumann WT, Tyson JJ.

BMC Syst Biol. 2017 Feb 28;11(1):30. doi: 10.1186/s12918-017-0409-1.


Linking autophagy with inflammation through IRF1 signaling in ER+ breast cancer.

Cook KL, Schwartz-Roberts JL, Baumann WT, Clarke R.

Mol Cell Oncol. 2015 Apr 14;3(1):e1023928. doi: 10.1080/23723556.2015.1023928. eCollection 2016 Jan.


A Model of Yeast Cell-Cycle Regulation Based on a Standard Component Modeling Strategy for Protein Regulatory Networks.

Laomettachit T, Chen KC, Baumann WT, Tyson JJ.

PLoS One. 2016 May 17;11(5):e0153738. doi: 10.1371/journal.pone.0153738. eCollection 2016.


Dynamic Modeling of the Interaction Between Autophagy and Apoptosis in Mammalian Cells.

Tavassoly I, Parmar J, Shajahan-Haq AN, Clarke R, Baumann WT, Tyson JJ.

CPT Pharmacometrics Syst Pharmacol. 2015 Apr;4(4):263-72. doi: 10.1002/psp4.29. Epub 2015 Apr 17.


Interferon regulatory factor-1 signaling regulates the switch between autophagy and apoptosis to determine breast cancer cell fate.

Schwartz-Roberts JL, Cook KL, Chen C, Shajahan-Haq AN, Axelrod M, Wärri A, Riggins RB, Jin L, Haddad BR, Kallakury BV, Baumann WT, Clarke R.

Cancer Res. 2015 Mar 15;75(6):1046-55. doi: 10.1158/0008-5472.CAN-14-1851. Epub 2015 Jan 9.


Knockdown of estrogen receptor-α induces autophagy and inhibits antiestrogen-mediated unfolded protein response activation, promoting ROS-induced breast cancer cell death.

Cook KL, Clarke PA, Parmar J, Hu R, Schwartz-Roberts JL, Abu-Asab M, Wärri A, Baumann WT, Clarke R.

FASEB J. 2014 Sep;28(9):3891-905. doi: 10.1096/fj.13-247353. Epub 2014 May 23.


A stochastic model correctly predicts changes in budding yeast cell cycle dynamics upon periodic expression of CLN2.

Oguz C, Palmisano A, Laomettachit T, Watson LT, Baumann WT, Tyson JJ.

PLoS One. 2014 May 9;9(5):e96726. doi: 10.1371/journal.pone.0096726. eCollection 2014.


Mathematical models of the transitions between endocrine therapy responsive and resistant states in breast cancer.

Chen C, Baumann WT, Xing J, Xu L, Clarke R, Tyson JJ.

J R Soc Interface. 2014 May 7;11(96):20140206. doi: 10.1098/rsif.2014.0206. Print 2014 Jul 6.


Modelling the effect of GRP78 on anti-oestrogen sensitivity and resistance in breast cancer.

Parmar JH, Cook KL, Shajahan-Haq AN, Clarke PA, Tavassoly I, Clarke R, Tyson JJ, Baumann WT.

Interface Focus. 2013 Aug 6;3(4):20130012. doi: 10.1098/rsfs.2013.0012.


Modeling the estrogen receptor to growth factor receptor signaling switch in human breast cancer cells.

Chen C, Baumann WT, Clarke R, Tyson JJ.

FEBS Lett. 2013 Oct 11;587(20):3327-34. doi: 10.1016/j.febslet.2013.08.022. Epub 2013 Aug 28.


Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model.

Oguz C, Laomettachit T, Chen KC, Watson LT, Baumann WT, Tyson JJ.

BMC Syst Biol. 2013 Jun 28;7:53. doi: 10.1186/1752-0509-7-53.


Endoplasmic reticulum stress, the unfolded protein response, autophagy, and the integrated regulation of breast cancer cell fate.

Clarke R, Cook KL, Hu R, Facey CO, Tavassoly I, Schwartz JL, Baumann WT, Tyson JJ, Xuan J, Wang Y, Wärri A, Shajahan AN.

Cancer Res. 2012 Mar 15;72(6):1321-31. doi: 10.1158/0008-5472.CAN-11-3213. Review.


Oscillatory dynamics of cell cycle proteins in single yeast cells analyzed by imaging cytometry.

Ball DA, Marchand J, Poulet M, Baumann WT, Chen KC, Tyson JJ, Peccoud J.

PLoS One. 2011;6(10):e26272. doi: 10.1371/journal.pone.0026272. Epub 2011 Oct 26.


Dynamic modelling of oestrogen signalling and cell fate in breast cancer cells.

Tyson JJ, Baumann WT, Chen C, Verdugo A, Tavassoly I, Wang Y, Weiner LM, Clarke R.

Nat Rev Cancer. 2011 Jun 16;11(7):523-32. doi: 10.1038/nrc3081. Review.


Stochastic exit from mitosis in budding yeast: model predictions and experimental observations.

Ball DA, Ahn TH, Wang P, Chen KC, Cao Y, Tyson JJ, Peccoud J, Baumann WT.

Cell Cycle. 2011 Mar 15;10(6):999-1009. Epub 2011 Mar 15.


The Bcl-2-associated death promoter (BAD) lowers the threshold at which the Bcl-2-interacting domain death agonist (BID) triggers mitochondria disintegration.

Howells CC, Baumann WT, Samuels DC, Finkielstein CV.

J Theor Biol. 2011 Feb 21;271(1):114-23. doi: 10.1016/j.jtbi.2010.11.040. Epub 2010 Dec 3.


A model of yeast cell-cycle regulation based on multisite phosphorylation.

Barik D, Baumann WT, Paul MR, Novak B, Tyson JJ.

Mol Syst Biol. 2010 Aug 24;6:405. doi: 10.1038/msb.2010.55.


Exploring the roles of noise in the eukaryotic cell cycle.

Kar S, Baumann WT, Paul MR, Tyson JJ.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6471-6. doi: 10.1073/pnas.0810034106. Epub 2009 Feb 25.


Stochastic simulation of enzyme-catalyzed reactions with disparate timescales.

Barik D, Paul MR, Baumann WT, Cao Y, Tyson JJ.

Biophys J. 2008 Oct;95(8):3563-74. doi: 10.1529/biophysj.108.129155. Epub 2008 Jul 11.

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