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Association of thigh and paraspinal muscle composition in young adults using chemical shift encoding-based water-fat MRI.

Burian E, Inhuber S, Schlaeger S, Dieckmeyer M, Klupp E, Franz D, Weidlich D, Sollmann N, Löffler M, Schwirtz A, Rummeny EJ, Zimmer C, Kirschke JS, Karampinos DC, Baum T.

Quant Imaging Med Surg. 2020 Jan;10(1):128-136. doi: 10.21037/qims.2019.11.08.


A hidden semi-Markov model for estimating burst suppression EEG.

Chakravarty S, Baum TE, An J, Kahali P, Brown EN.

Conf Proc IEEE Eng Med Biol Soc. 2019 Jul;2019:7076-7079. doi: 10.1109/EMBC.2019.8856802.


Correction to: Associations of thigh muscle fat infiltration with isometric strength measurements based on chemical shift encoding-based water-fat magnetic resonance imaging.

Inhuber S, Sollmann N, Schlaeger S, Dieckmeyer M, Burian E, Kohlmeyer C, Karampinos DC, Kirschke JS, Baum T, Kreuzpointner F, Schwirtz A.

Eur Radiol Exp. 2019 Dec 23;3(1):50. doi: 10.1186/s41747-019-0140-3.


Effect of the intervertebral disc on vertebral bone strength prediction: a Finite-Element study.

Anitha DP, Baum T, Kirschke JS, Subburaj K.

Spine J. 2019 Dec 10. pii: S1529-9430(19)31116-7. doi: 10.1016/j.spinee.2019.11.015. [Epub ahead of print]


Associations of thigh muscle fat infiltration with isometric strength measurements based on chemical shift encoding-based water-fat magnetic resonance imaging.

Inhuber S, Sollmann N, Schlaeger S, Dieckmeyer M, Burian E, Kohlmeyer C, Karampinos DC, Kirschke JS, Baum T, Kreuzpointner F, Schwirtz A.

Eur Radiol Exp. 2019 Nov 20;3(1):45. doi: 10.1186/s41747-019-0123-4. Erratum in: Eur Radiol Exp. 2019 Dec 23;3(1):50.


X-ray-based quantitative osteoporosis imaging at the spine.

Löffler MT, Sollmann N, Mei K, Valentinitsch A, Noël PB, Kirschke JS, Baum T.

Osteoporos Int. 2019 Nov 14. doi: 10.1007/s00198-019-05212-2. [Epub ahead of print] Review.


The roles of Arabidopsis Growth-Regulating Factors 1 and 3 in growth-stress antagonism.

Piya S, Liu J, Burch-Smith T, Baum TJ, Hewezi T.

J Exp Bot. 2019 Nov 8. pii: erz502. doi: 10.1093/jxb/erz502. [Epub ahead of print]


Systematic Evaluation of Low-dose MDCT for Planning Purposes of Lumbosacral Periradicular Infiltrations.

Sollmann N, Mei K, Schön S, Riederer I, Kopp FK, Löffler MT, Probst M, Rummeny EJ, Zimmer C, Kirschke JS, Noël PB, Baum T.

Clin Neuroradiol. 2019 Nov 6. doi: 10.1007/s00062-019-00844-7. [Epub ahead of print]


Vertebral bone marrow fat fraction changes in postmenopausal women with breast cancer receiving combined aromatase inhibitor and bisphosphonate therapy.

Dieckmeyer M, Ruschke S, Rohrmeier A, Syväri J, Einspieler I, Seifert-Klauss V, Schmidmayr M, Metz S, Kirschke JS, Rummeny EJ, Zimmer C, Karampinos DC, Baum T.

BMC Musculoskelet Disord. 2019 Nov 6;20(1):515. doi: 10.1186/s12891-019-2916-2.


SCNBase: a genomics portal for the soybean cyst nematode (Heterodera glycines).

Masonbrink R, Maier TR, Seetharam AS, Juvale PS, Baber L, Baum TJ, Severin AJ.

Database (Oxford). 2019 Jan 1;2019(1). pii: baz111. doi: 10.1093/database/baz111.


Effects of dopamine and serotonin synthesis inhibitors on the ketamine-, d-amphetamine-, and cocaine-induced locomotor activity of preweanling and adolescent rats: sex differences.

McDougall SA, Rios JW, Apodaca MG, Park GI, Montejano NR, Taylor JA, Moran AE, Robinson JAM, Baum TJ, Teran A, Crawford CA.

Behav Brain Res. 2020 Feb 3;379:112302. doi: 10.1016/j.bbr.2019.112302. Epub 2019 Oct 23.


Effects of monoamine depletion on the ketamine-induced locomotor activity of preweanling, adolescent, and adult rats: Sex and age differences.

Crawford CA, Moran AE, Baum TJ, Apodaca MG, Montejano NR, Park GI, Gomez V, McDougall SA.

Behav Brain Res. 2020 Feb 3;379:112267. doi: 10.1016/j.bbr.2019.112267. Epub 2019 Oct 5.


Impact of brief prewarming on anesthesia-related core-temperature drop, hemodynamics, microperfusion and postoperative ventilation in cytoreductive surgery of ovarian cancer: a randomized trial.

Kaufner L, Niggemann P, Baum T, Casu S, Sehouli J, Bietenbeck A, Boschmann M, Spies CD, Henkelmann A, von Heymann C.

BMC Anesthesiol. 2019 Aug 22;19(1):161. doi: 10.1186/s12871-019-0828-1.


Accelerating anatomical 2D turbo spin echo imaging of the ankle using compressed sensing.

Gersing AS, Bodden J, Neumann J, Diefenbach MN, Kronthaler S, Pfeiffer D, Knebel C, Baum T, Schwaiger BJ, Hock A, Rummeny EJ, Woertler K, Karampinos DC.

Eur J Radiol. 2019 Sep;118:277-284. doi: 10.1016/j.ejrad.2019.06.006. Epub 2019 Jun 16.


Bone mineral density measurements derived from dual-layer spectral CT enable opportunistic screening for osteoporosis.

Roski F, Hammel J, Mei K, Baum T, Kirschke JS, Laugerette A, Kopp FK, Bodden J, Pfeiffer D, Pfeiffer F, Rummeny EJ, Noël PB, Gersing AS, Schwaiger BJ.

Eur Radiol. 2019 Nov;29(11):6355-6363. doi: 10.1007/s00330-019-06263-z. Epub 2019 May 21.


[Diplopic images since one week and space-occupying lesion of the skull base].

Sollmann N, Baum T, Zimmer C, Maegerlein C.

Radiologe. 2019 Aug;59(8):750-754. doi: 10.1007/s00117-019-0545-2. German. No abstract available.


Tube Current Reduction in CT Angiography: How Low Can We Go in Imaging of Patients With Suspected Acute Stroke?

Sollmann N, Mei K, Riederer I, Schön S, Kopp FK, Löffler MT, Hedderich DM, Maegerlein C, Friedrich B, Kreiser K, Boeckh-Behrens T, Kirschke JS, Rummeny EJ, Zimmer C, Noël PB, Baum T.

AJR Am J Roentgenol. 2019 Aug;213(2):410-416. doi: 10.2214/AJR.18.20954. Epub 2019 Apr 30.


Lumbar muscle and vertebral bodies segmentation of chemical shift encoding-based water-fat MRI: the reference database MyoSegmenTUM spine.

Burian E, Rohrmeier A, Schlaeger S, Dieckmeyer M, Diefenbach MN, Syväri J, Klupp E, Weidlich D, Zimmer C, Rummeny EJ, Karampinos DC, Kirschke JS, Baum T.

BMC Musculoskelet Disord. 2019 Apr 9;20(1):152. doi: 10.1186/s12891-019-2528-x.


Multi-detector CT imaging: impact of virtual tube current reduction and sparse sampling on detection of vertebral fractures.

Sollmann N, Mei K, Hedderich DM, Maegerlein C, Kopp FK, Löffler MT, Zimmer C, Rummeny EJ, Kirschke JS, Baum T, Noël PB.

Eur Radiol. 2019 Jul;29(7):3606-3616. doi: 10.1007/s00330-019-06090-2. Epub 2019 Mar 22.


Texture analysis of vertebral bone marrow using chemical shift encoding-based water-fat MRI: a feasibility study.

Burian E, Subburaj K, Mookiah MRK, Rohrmeier A, Hedderich DM, Dieckmeyer M, Diefenbach MN, Ruschke S, Rummeny EJ, Zimmer C, Kirschke JS, Karampinos DC, Baum T.

Osteoporos Int. 2019 Jun;30(6):1265-1274. doi: 10.1007/s00198-019-04924-9. Epub 2019 Mar 22.


A systematic review of the use of the electronic health record for patient identification, communication, and clinical support in palliative care.

Bush RA, Pérez A, Baum T, Etland C, Connelly CD.

JAMIA Open. 2018 Oct 1;1(2):294-303. doi: 10.1093/jamiaopen/ooy028. Epub 2018 Jul 6.


Opportunistic osteoporosis screening in multi-detector CT images via local classification of textures.

Valentinitsch A, Trebeschi S, Kaesmacher J, Lorenz C, Löffler MT, Zimmer C, Baum T, Kirschke JS.

Osteoporos Int. 2019 Jun;30(6):1275-1285. doi: 10.1007/s00198-019-04910-1. Epub 2019 Mar 4.


Re-targeting of a plant defense protease by a cyst nematode effector.

Pogorelko GV, Juvale PS, Rutter WB, Hütten M, Maier TR, Hewezi T, Paulus J, van der Hoorn RA, Grundler FM, Siddique S, Lionetti V, Zabotina OA, Baum TJ.

Plant J. 2019 Jun;98(6):1000-1014. doi: 10.1111/tpj.14295. Epub 2019 Apr 1.


T2 mapping of lumbosacral nerves in patients suffering from unilateral radicular pain due to degenerative disc disease.

Sollmann N, Weidlich D, Cervantes B, Klupp E, Ganter C, Kooijman H, Zimmer C, Rummeny EJ, Meyer B, Baum T, Kirschke JS, Karampinos DC.

J Neurosurg Spine. 2019 Feb 22:1-9. doi: 10.3171/2018.10.SPINE181172. [Epub ahead of print]


Improved prediction of incident vertebral fractures using opportunistic QCT compared to DXA.

Löffler MT, Jacob A, Valentinitsch A, Rienmüller A, Zimmer C, Ryang YM, Baum T, Kirschke JS.

Eur Radiol. 2019 Sep;29(9):4980-4989. doi: 10.1007/s00330-019-06018-w. Epub 2019 Feb 21.


3D grating-based X-ray phase-contrast computed tomography for high-resolution quantitative assessment of cartilage: An experimental feasibility study with 3T MRI, 7T MRI and biomechanical correlation.

Herzen J, Karampinos DC, Foehr P, Birnbacher L, Viermetz M, Burgkart R, Baum T, Lohoefer F, Wildgruber M, Schilling F, Willner M, Marschner M, Noël PB, Rummeny EJ, Pfeiffer F, Jungmann PM.

PLoS One. 2019 Feb 14;14(2):e0212106. doi: 10.1371/journal.pone.0212106. eCollection 2019.


DXA-equivalent quantification of bone mineral density using dual-layer spectral CT scout scans.

Laugerette A, Schwaiger BJ, Brown K, Frerking LC, Kopp FK, Mei K, Sellerer T, Kirschke J, Baum T, Gersing AS, Pfeiffer D, Fingerle AA, Rummeny EJ, Proksa R, Noël PB, Pfeiffer F.

Eur Radiol. 2019 Sep;29(9):4624-4634. doi: 10.1007/s00330-019-6005-6. Epub 2019 Feb 13.


The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes.

Masonbrink R, Maier TR, Muppirala U, Seetharam AS, Lord E, Juvale PS, Schmutz J, Johnson NT, Korkin D, Mitchum MG, Mimee B, den Akker SE, Hudson M, Severin AJ, Baum TJ.

BMC Genomics. 2019 Feb 7;20(1):119. doi: 10.1186/s12864-019-5485-8.


Paraspinal Muscle DTI Metrics Predict Muscle Strength.

Klupp E, Cervantes B, Schlaeger S, Inhuber S, Kreuzpointer F, Schwirtz A, Rohrmeier A, Dieckmeyer M, Hedderich DM, Diefenbach MN, Freitag F, Rummeny EJ, Zimmer C, Kirschke JS, Karampinos DC, Baum T.

J Magn Reson Imaging. 2019 Sep;50(3):816-823. doi: 10.1002/jmri.26679. Epub 2019 Feb 5.


Heterodera glycines utilizes promiscuous spliced leaders and demonstrates a unique preference for a species-specific spliced leader over C. elegans SL1.

Barnes SN, Masonbrink RE, Maier TR, Seetharam A, Sindhu AS, Severin AJ, Baum TJ.

Sci Rep. 2019 Feb 4;9(1):1356. doi: 10.1038/s41598-018-37857-0.


Homeostasis in the soybean miRNA396-GRF network is essential for productive soybean cyst nematode infections.

Noon JB, Hewezi T, Baum TJ.

J Exp Bot. 2019 Mar 11;70(5):1653-1668. doi: 10.1093/jxb/erz022.


Longitudinal changes in subchondral bone structure as assessed with MRI are associated with functional outcome after high tibial osteotomy.

Gersing AS, Jungmann PM, Schwaiger BJ, Zarnowski J, Kopp FK, Landwehr S, Sauerschnig M, Joseph GB, Imhoff AB, Rummeny EJ, Kirschke JS, Baum T.

J ISAKOS. 2018 Jul 20;3(4):205-212. doi: 10.1136/jisakos-2017-000194. Epub 2018 Jun 28.


Differentiating supraclavicular from gluteal adipose tissue based on simultaneous PDFF and T2 * mapping using a 20-echo gradient-echo acquisition.

Franz D, Diefenbach MN, Treibel F, Weidlich D, Syväri J, Ruschke S, Wu M, Holzapfel C, Drabsch T, Baum T, Eggers H, Rummeny EJ, Hauner H, Karampinos DC.

J Magn Reson Imaging. 2019 Aug;50(2):424-434. doi: 10.1002/jmri.26661. Epub 2019 Jan 25.


Quantitative magnetic resonance imaging of the upper trapezius muscles - assessment of myofascial trigger points in patients with migraine.

Sollmann N, Mathonia N, Weidlich D, Bonfert M, Schroeder SA, Badura KA, Renner T, Trepte-Freisleder F, Ganter C, Krieg SM, Zimmer C, Rummeny EJ, Karampinos DC, Baum T, Landgraf MN, Heinen F.

J Headache Pain. 2019 Jan 18;20(1):8. doi: 10.1186/s10194-019-0960-9.


Gender- and Age-Related Changes in Trunk Muscle Composition Using Chemical Shift Encoding-Based Water⁻Fat MRI.

Burian E, Syväri J, Holzapfel C, Drabsch T, Kirschke JS, Rummeny EJ, Zimmer C, Hauner H, Karampinos DC, Baum T, Franz D.

Nutrients. 2018 Dec 13;10(12). pii: E1972. doi: 10.3390/nu10121972.


Comparative Flavivirus-Host Protein Interaction Mapping Reveals Mechanisms of Dengue and Zika Virus Pathogenesis.

Shah PS, Link N, Jang GM, Sharp PP, Zhu T, Swaney DL, Johnson JR, Von Dollen J, Ramage HR, Satkamp L, Newton B, Hüttenhain R, Petit MJ, Baum T, Everitt A, Laufman O, Tassetto M, Shales M, Stevenson E, Iglesias GN, Shokat L, Tripathi S, Balasubramaniam V, Webb LG, Aguirre S, Willsey AJ, Garcia-Sastre A, Pollard KS, Cherry S, Gamarnik AV, Marazzi I, Taunton J, Fernandez-Sesma A, Bellen HJ, Andino R, Krogan NJ.

Cell. 2018 Dec 13;175(7):1931-1945.e18. doi: 10.1016/j.cell.2018.11.028.


Automated assessment of paraspinal muscle fat composition based on the segmentation of chemical shift encoding-based water/fat-separated images.

Baum T, Lorenz C, Buerger C, Freitag F, Dieckmeyer M, Eggers H, Zimmer C, Karampinos DC, Kirschke JS.

Eur Radiol Exp. 2018 Nov 7;2(1):32. doi: 10.1186/s41747-018-0065-2.


Differentiation of Acute/Subacute versus Old Vertebral Fractures in Multislice Detector Computed Tomography: Is Magnetic Resonance Imaging Always Needed?

Hedderich DM, Maegerlein C, Baum T, Hapfelmeier A, Ryang YM, Zimmer C, Kirschke JS.

World Neurosurg. 2019 Feb;122:e676-e683. doi: 10.1016/j.wneu.2018.10.121. Epub 2018 Oct 29.


An Effector from the Cyst Nematode Heterodera schachtii Derepresses Host rRNA Genes by Altering Histone Acetylation.

Vijayapalani P, Hewezi T, Pontvianne F, Baum TJ.

Plant Cell. 2018 Nov;30(11):2795-2812. doi: 10.1105/tpc.18.00570. Epub 2018 Oct 17.


Associations Between Lumbar Vertebral Bone Marrow and Paraspinal Muscle Fat Compositions-An Investigation by Chemical Shift Encoding-Based Water-Fat MRI.

Sollmann N, Dieckmeyer M, Schlaeger S, Rohrmeier A, Syvaeri J, Diefenbach MN, Weidlich D, Ruschke S, Klupp E, Franz D, Rummeny EJ, Zimmer C, Kirschke JS, Karampinos DC, Baum T.

Front Endocrinol (Lausanne). 2018 Sep 28;9:563. doi: 10.3389/fendo.2018.00563. eCollection 2018.


On the sensitivity of quantitative susceptibility mapping for measuring trabecular bone density.

Diefenbach MN, Meineke J, Ruschke S, Baum T, Gersing A, Karampinos DC.

Magn Reson Med. 2019 Mar;81(3):1739-1754. doi: 10.1002/mrm.27531. Epub 2018 Sep 28.


T2-relaxation time of cartilage repair tissue is associated with bone remodeling after spongiosa-augmented matrix-associated autologous chondrocyte implantation.

Gersing AS, Feuerriegel G, Holwein C, Suchowierski J, Karampinos DC, Haller B, Baum T, Schwaiger BJ, Kirschke JS, Rummeny EJ, Imhoff AB, Woertler K, Jungmann PM.

Osteoarthritis Cartilage. 2019 Jan;27(1):90-98. doi: 10.1016/j.joca.2018.08.023. Epub 2018 Sep 22.


Effect of Statistically Iterative Image Reconstruction on Vertebral Bone Strength Prediction Using Bone Mineral Density and Finite Element Modeling: A Preliminary Study.

Anitha D, Subburaj K, Kopp FK, Mei K, Foehr P, Burgkart R, Sollmann N, Maegerlein C, Kirschke JS, Noel PB, Baum T.

J Comput Assist Tomogr. 2019 Jan/Feb;43(1):61-65. doi: 10.1097/RCT.0000000000000788.


Effects of virtual tube current reduction and sparse sampling on MDCT-based femoral BMD measurements.

Sollmann N, Mei K, Schwaiger BJ, Gersing AS, Kopp FK, Bippus R, Maegerlein C, Zimmer C, Rummeny EJ, Kirschke JS, Noël PB, Baum T.

Osteoporos Int. 2018 Dec;29(12):2685-2692. doi: 10.1007/s00198-018-4675-6. Epub 2018 Aug 24.


MDCT-based Finite Element Analysis of Vertebral Fracture Risk: What Dose is Needed?

Anitha D, Mei K, Dieckmeyer M, Kopp FK, Sollmann N, Zimmer C, Kirschke JS, Noel PB, Baum T, Subburaj K.

Clin Neuroradiol. 2019 Dec;29(4):645-651. doi: 10.1007/s00062-018-0722-0. Epub 2018 Aug 21.


Correction to: STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plantparasitic nematode Bursaphelenchus xylophilus.

Espada M, den Akker SE, Maier T, Vijayapalani P, Baum T, Mota M, Jones JT.

BMC Genomics. 2018 Aug 10;19(1):603. doi: 10.1186/s12864-018-4990-5.


Reliable semiquantitative whole-joint MRI score for the shoulder joint: The shoulder osteoarthritis severity (SOAS) score.

Jungmann PM, Gersing AS, Woertler K, Dietrich TJ, Baum T, Baumann F, Bensler S.

J Magn Reson Imaging. 2019 Jun;49(7):e152-e163. doi: 10.1002/jmri.26251. Epub 2018 Aug 5.


STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plant-parasitic nematode Bursaphelenchus xylophilus.

Espada M, Eves-van den Akker S, Maier T, Vijayapalani P, Baum T, Mota M, Jones JT.

BMC Genomics. 2018 Jul 27;19(1):553. doi: 10.1186/s12864-018-4908-2. Erratum in: BMC Genomics. 2018 Aug 10;19(1):603.


The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders.

Willsey AJ, Morris MT, Wang S, Willsey HR, Sun N, Teerikorpi N, Baum TB, Cagney G, Bender KJ, Desai TA, Srivastava D, Davis GW, Doudna J, Chang E, Sohal V, Lowenstein DH, Li H, Agard D, Keiser MJ, Shoichet B, von Zastrow M, Mucke L, Finkbeiner S, Gan L, Sestan N, Ward ME, Huttenhain R, Nowakowski TJ, Bellen HJ, Frank LM, Khokha MK, Lifton RP, Kampmann M, Ideker T, State MW, Krogan NJ.

Cell. 2018 Jul 26;174(3):505-520. doi: 10.1016/j.cell.2018.06.016. Review.


Improved Brachial Plexus Visualization Using an Adiabatic iMSDE-Prepared STIR 3D TSE.

Klupp E, Cervantes B, Sollmann N, Treibel F, Weidlich D, Baum T, Rummeny EJ, Zimmer C, Kirschke JS, Karampinos DC.

Clin Neuroradiol. 2019 Dec;29(4):631-638. doi: 10.1007/s00062-018-0706-0. Epub 2018 Jul 23.


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