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Items: 1 to 50 of 67

1.

A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?

Conover JL, Karimi N, Stenz N, Ané C, Grover CE, Skema C, Tate JA, Wolff K, Logan SA, Wendel JF, Baum DA.

J Integr Plant Biol. 2019 Jan;61(1):12-31. doi: 10.1111/jipb.12746.

PMID:
30474311
2.

Exclusivity offers a sound yet practical species criterion for bacteria despite abundant gene flow.

Wright ES, Baum DA.

BMC Genomics. 2018 Oct 3;19(1):724. doi: 10.1186/s12864-018-5099-6.

3.

The origin and early evolution of life in chemical composition space.

Baum DA.

J Theor Biol. 2018 Nov 7;456:295-304. doi: 10.1016/j.jtbi.2018.08.016. Epub 2018 Aug 12.

PMID:
30110611
4.

Life's Late Digital Revolution and Why It Matters for the Study of the Origins of Life.

Baum DA, Lehman N.

Life (Basel). 2017 Aug 25;7(3). pii: E34. doi: 10.3390/life7030034.

5.

Erratum to: An Experimental Framework for Generating Evolvable Chemical Systems in the Laboratory.

Baum DA, Vetsigian K.

Orig Life Evol Biosph. 2017 Dec;47(4):555. doi: 10.1007/s11084-016-9529-7. No abstract available.

PMID:
27933421
6.

An Experimental Framework for Generating Evolvable Chemical Systems in the Laboratory.

Baum DA, Vetsigian K.

Orig Life Evol Biosph. 2017 Dec;47(4):481-497. doi: 10.1007/s11084-016-9526-x. Epub 2016 Nov 18. Erratum in: Orig Life Evol Biosph. 2016 Dec 8;:.

7.

Revisiting the phylogeny of Bombacoideae (Malvaceae): Novel relationships, morphologically cohesive clades, and a new tribal classification based on multilocus phylogenetic analyses.

Carvalho-Sobrinho JG, Alverson WS, Alcantara S, Queiroz LP, Mota AC, Baum DA.

Mol Phylogenet Evol. 2016 Aug;101:56-74. doi: 10.1016/j.ympev.2016.05.006. Epub 2016 May 3.

8.

Statistical evidence for common ancestry: Application to primates.

Baum DA, Ané C, Larget B, Solís-Lemus C, Ho LS, Boone P, Drummond CP, Bontrager M, Hunter SJ, Saucier W.

Evolution. 2016 Jun;70(6):1354-63. doi: 10.1111/evo.12934. Epub 2016 May 30.

PMID:
27139421
9.

Clade-specific positive selection on a developmental gene: BRANCHLESS TRICHOME and the evolution of stellate trichomes in Physaria (Brassicaceae).

Mazie AR, Baum DA.

Mol Phylogenet Evol. 2016 Jul;100:31-40. doi: 10.1016/j.ympev.2016.03.027. Epub 2016 Mar 22.

PMID:
27015897
10.

Whole genome duplication in coast redwood (Sequoia sempervirens) and its implications for explaining the rarity of polyploidy in conifers.

Scott AD, Stenz NW, Ingvarsson PK, Baum DA.

New Phytol. 2016 Jul;211(1):186-93. doi: 10.1111/nph.13930. Epub 2016 Mar 21.

11.

A comparison of autogenous theories for the origin of eukaryotic cells.

Baum DA.

Am J Bot. 2015 Dec;102(12):1954-65. doi: 10.3732/ajb.1500196. Epub 2015 Dec 7. Review.

12.

Evolutionary transgenomics: prospects and challenges.

Correa R, Baum DA.

Front Plant Sci. 2015 Oct 20;6:858. doi: 10.3389/fpls.2015.00858. eCollection 2015.

13.

Effect of Aptamer Binding on the Electron-Transfer Properties of Redox Cofactors.

Emahi I, Gruenke PR, Baum DA.

J Mol Evol. 2015 Dec;81(5-6):186-93. doi: 10.1007/s00239-015-9707-7. Epub 2015 Oct 24.

PMID:
26498628
14.

Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant Species Arabidopsis thaliana (L.) Heynh.

Stenz NW, Larget B, Baum DA, Ané C.

Syst Biol. 2015 Sep;64(5):809-23. doi: 10.1093/sysbio/syv039. Epub 2015 Jun 27.

PMID:
26117705
15.

Correction: New genetic and linguistic analyses show ancient human influence on baobab evolution and distribution in australia.

Rangan H, Bell KL, Baum DA, Fowler R, McConvell P, Saunders T, Spronck S, Kull CA, Murphy DJ.

PLoS One. 2015 Apr 27;10(4):e0127582. doi: 10.1371/journal.pone.0127582. eCollection 2015. No abstract available.

16.

New genetic and linguistic analyses show ancient human influence on baobab evolution and distribution in Australia.

Rangan H, Bell KL, Baum DA, Fowler R, McConvell P, Saunders T, Spronck S, Kull CA, Murphy DJ.

PLoS One. 2015 Apr 1;10(4):e0119758. doi: 10.1371/journal.pone.0119758. eCollection 2015. Erratum in: PLoS One. 2015;10(4):e0127582.

17.

An inside-out origin for the eukaryotic cell.

Baum DA, Baum B.

BMC Biol. 2014 Oct 28;12:76. doi: 10.1186/s12915-014-0076-2.

18.

Long-term morphological stasis maintained by a plant-pollinator mutualism.

Davis CC, Schaefer H, Xi Z, Baum DA, Donoghue MJ, Harmon LJ.

Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):5914-9. doi: 10.1073/pnas.1403157111. Epub 2014 Apr 4.

19.

Enhanced deoxyribozyme-catalyzed RNA ligation in the presence of organic cosolvents.

Behera AK, Schlund KJ, Mason AJ, Alila KO, Han M, Grout RL, Baum DA.

Biopolymers. 2013 Jun;99(6):382-91. doi: 10.1002/bip.22191.

20.

Precise spatio-temporal regulation of the anthocyanin biosynthetic pathway leads to petal spot formation in Clarkia gracilis (Onagraceae).

Martins TR, Berg JJ, Blinka S, Rausher MD, Baum DA.

New Phytol. 2013 Feb;197(3):958-69. doi: 10.1111/nph.12062. Epub 2012 Dec 10.

21.

The Caribbean slipper spurge Euphorbia tithymaloides: the first example of a ring species in plants.

Cacho NI, Baum DA.

Proc Biol Sci. 2012 Sep 7;279(1742):3377-83. doi: 10.1098/rspb.2012.0498. Epub 2012 Jun 13.

22.

Species and phylogenetic nomenclature.

Cellinese N, Baum DA, Mishler BD.

Syst Biol. 2012 Oct;61(5):885-91. doi: 10.1093/sysbio/sys035. Epub 2012 Feb 29. No abstract available.

PMID:
22382300
23.

An assessment of transgenomics as a tool for identifying genes involved in the evolutionary differentiation of closely related plant species.

Correa R, Stanga J, Larget B, Roznowski A, Shu G, Dilkes B, Baum DA.

New Phytol. 2012 Jan;193(2):494-503. doi: 10.1111/j.1469-8137.2011.03949.x. Epub 2011 Nov 11.

24.

Investigation of a deoxyribozyme as a biofuel cell catalyst.

Zhang M, Xu S, Minteer SD, Baum DA.

J Am Chem Soc. 2011 Oct 12;133(40):15890-3. doi: 10.1021/ja206787h. Epub 2011 Sep 15.

PMID:
21902236
25.

Modulation of an RNA-branching deoxyribozyme by a small molecule.

Alila KO, Baum DA.

Chem Commun (Camb). 2011 Mar 21;47(11):3227-9. doi: 10.1039/c0cc04971a. Epub 2011 Jan 24.

PMID:
21258742
26.

Possible contributions of TERMINAL FLOWER 1 to the evolution of rosette flowering in Leavenworthia (Brassicaceae).

Liu N, Sliwinski MK, Correa R, Baum DA.

New Phytol. 2011 Jan;189(2):616-28. doi: 10.1111/j.1469-8137.2010.03511.x. Epub 2010 Nov 3.

27.

Are spurred cyathia a key innovation? Molecular systematics and trait evolution in the slipper spurges (Pedilanthus clade: Euphorbia, Euphorbiaceae).

Cacho NI, Berry PE, Olson ME, Steinmann VW, Baum DA.

Am J Bot. 2010 Mar;97(3):493-510. doi: 10.3732/ajb.0900090. Epub 2010 Feb 19.

28.

The need for molecular genetic perspectives in evolutionary education (and vice versa).

Smith JJ, Baum DA, Moore A.

Trends Genet. 2009 Oct;25(10):427-9. doi: 10.1016/j.tig.2009.09.001. Epub 2009 Oct 2.

PMID:
19801171
29.

Species as ranked taxa.

Baum DA.

Syst Biol. 2009 Feb;58(1):74-86. doi: 10.1093/sysbio/syp011. Epub 2009 May 19.

PMID:
20525569
30.

Use of deoxyribozymes in RNA research.

Silverman SK, Baum DA.

Methods Enzymol. 2009;469:95-117. doi: 10.1016/S0076-6879(09)69005-4. Epub 2009 Nov 17.

31.

Deoxyribozymes: useful DNA catalysts in vitro and in vivo.

Baum DA, Silverman SK.

Cell Mol Life Sci. 2008 Jul;65(14):2156-74. doi: 10.1007/s00018-008-8029-y. Review.

PMID:
18373062
32.

An exploration of LEAFY expression in independent evolutionary origins of rosette flowering in Brassicaceae.

Bosch JA, Heo K, Sliwinski MK, Baum DA.

Am J Bot. 2008 Mar;95(3):286-93. doi: 10.3732/ajb.95.3.286.

33.

DNA-catalyzed formation of nucleopeptide linkages.

Pradeepkumar PI, Höbartner C, Baum DA, Silverman SK.

Angew Chem Int Ed Engl. 2008;47(9):1753-7. doi: 10.1002/anie.200703676. No abstract available.

PMID:
18214866
34.

The role of pollinator shifts in the floral diversification of Iochroma (Solanaceae).

Smith SD, Ané C, Baum DA.

Evolution. 2008 Apr;62(4):793-806. doi: 10.1111/j.1558-5646.2008.00327.x. Epub 2008 Jan 14. Erratum in: Evolution. 2009 Dec;63(12):3277.

PMID:
18208567
35.

The evolution of floral gigantism.

Davis CC, Endress PK, Baum DA.

Curr Opin Plant Biol. 2008 Feb;11(1):49-57. doi: 10.1016/j.pbi.2007.11.003. Epub 2008 Jan 22. Review.

PMID:
18207449
36.
37.

The role of two LEAFY paralogs from Idahoa scapigera (Brassicaceae) in the evolution of a derived plant architecture.

Sliwinski MK, Bosch JA, Yoon HS, Balthazar Mv, Baum DA.

Plant J. 2007 Jul;51(2):211-9. Epub 2007 Jun 8. Erratum in: Plant J. 2007 Aug;51(4):738.

38.

Deoxyribozyme-catalyzed labeling of RNA.

Baum DA, Silverman SK.

Angew Chem Int Ed Engl. 2007;46(19):3502-4. No abstract available.

PMID:
17394278
39.

Floral gigantism in Rafflesiaceae.

Davis CC, Latvis M, Nickrent DL, Wurdack KJ, Baum DA.

Science. 2007 Mar 30;315(5820):1812. Epub 2007 Jan 11.

40.

Bayesian estimation of concordance among gene trees.

Ané C, Larget B, Baum DA, Smith SD, Rokas A.

Mol Biol Evol. 2007 Feb;24(2):412-26. Epub 2006 Nov 9. Erratum in: Mol Biol Evol. 2007 Jul;24(7):1575.

PMID:
17095535
41.

Evolutionary divergence of LFY function in the mustards Arabidopsis thaliana and Leavenworthia crassa.

Sliwinski MK, White MA, Maizel A, Weigel D, Baum DA.

Plant Mol Biol. 2006 Sep;62(1-2):279-89. Epub 2006 Aug 17.

PMID:
16915521
42.

Phylogenetics of the florally diverse Andean clade Iochrominae (Solanaceae).

Smith SD, Baum DA.

Am J Bot. 2006 Aug;93(8):1140-53. doi: 10.3732/ajb.93.8.1140.

43.

Evolution. The tree-thinking challenge.

Baum DA, Smith SD, Donovan SS.

Science. 2005 Nov 11;310(5750):979-80. No abstract available.

PMID:
16284166
45.

Molecular evolution of the transcription factor LEAFY in Brassicaceae.

Baum DA, Yoon HS, Oldham RL.

Mol Phylogenet Evol. 2005 Oct;37(1):1-14.

PMID:
16112883
46.

5' transcript replacement in vitro catalyzed by a group I intron-derived ribozyme.

Alexander RC, Baum DA, Testa SM.

Biochemistry. 2005 May 31;44(21):7796-804.

PMID:
15909994
47.
50.

Phylogenetic relationships of Malvatheca (Bombacoideae and Malvoideae; Malvaceae sensu lato) as inferred from plastid DNA sequences.

Baum DA, Dewitt Smith S, Yen A, Alverson WS, Nyffeler R, Whitlock BA, Oldham RL.

Am J Bot. 2004 Nov;91(11):1863-71. doi: 10.3732/ajb.91.11.1863.

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