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Detection of porcine epidemic diarrhea virus-neutralizing antibody using high-throughput imaging cytometry.

Sarmento LV, Poonsuk K, Tian L, Mora-Díaz JC, Main RG, Baum DH, Zimmerman JJ, Giménez-Lirola LG.

J Vet Diagn Invest. 2020 Mar;32(2):324-328. doi: 10.1177/1040638720903346. Epub 2020 Feb 15.


Co-aligned chondrocytes: Zonal morphological variation and structured arrangement of cell lacunae in tessellated cartilage.

Chaumel J, Schotte M, Bizzarro JJ, Zaslansky P, Fratzl P, Baum D, Dean MN.

Bone. 2020 Feb 11;134:115264. doi: 10.1016/j.bone.2020.115264. [Epub ahead of print]


4D imaging of lithium-batteries using correlative neutron and X-ray tomography with a virtual unrolling technique.

Ziesche RF, Arlt T, Finegan DP, Heenan TMM, Tengattini A, Baum D, Kardjilov N, Markötter H, Manke I, Kockelmann W, Brett DJL, Shearing PR.

Nat Commun. 2020 Feb 7;11(1):777. doi: 10.1038/s41467-019-13943-3.


Reticulate evolution helps explain apparent homoplasy in floral biology and pollination in baobabs (Adansonia; Bombacoideae; Malvaceae).

Karimi N, Grover CE, Gallagher JP, Wendel JF, Ané C, Baum DA.

Syst Biol. 2019 Nov 6. pii: syz073. doi: 10.1093/sysbio/syz073. [Epub ahead of print]


Chemical Ecosystem Selection on Mineral Surfaces Reveals Long-Term Dynamics Consistent with the Spontaneous Emergence of Mutual Catalysis.

Vincent L, Berg M, Krismer M, Saghafi SS, Cosby J, Sankari T, Vetsigian K, Ii HJC, Baum DA.

Life (Basel). 2019 Oct 23;9(4). pii: E80. doi: 10.3390/life9040080.


Early detection and differential serodiagnosis of Mycoplasma hyorhinis and Mycoplasma hyosynoviae infections under experimental conditions.

Giménez-Lirola LG, Meiroz-De-Souza-Almeida H, Magtoto RL, McDaniel AJ, Merodio MM, Matias Ferreyra FS, Poonsuk K, Gatto IRH, Baum DH, Ross RF, Arruda PHE, Schwartz KJ, Zimmerman JJ, Derscheid RJ, Arruda BL.

PLoS One. 2019 Oct 7;14(10):e0223459. doi: 10.1371/journal.pone.0223459. eCollection 2019.


High-Throughput Segmentation of Tiled Biological Structures using Random-Walk Distance Transforms.

Baum D, Weaver JC, Zlotnikov I, Knötel D, Tomholt L, Dean MN.

Integr Comp Biol. 2019 Dec 1;59(6):1700-1712. doi: 10.1093/icb/icz117.


Crisaborole 2% ointment for the treatment of intertriginous, anogenital, and facial psoriasis: A double-blind, randomized, vehicle-controlled trial.

Hashim PW, Chima M, Kim HJ, Bares J, Yao CJ, Singer G, Chen T, Genece J, Baum D, Kimmel GW, Nia JK, Gagliotti M, Lebwohl MG.

J Am Acad Dermatol. 2020 Feb;82(2):360-365. doi: 10.1016/j.jaad.2019.06.1288. Epub 2019 Jul 3.


Mortality Patterns in a Commercial Wean-To Finish Swine Production System.

Mehling S, Henao-Diaz A, Maurer J, Kluber E, Stika R, Rademacher C, Zimmerman J, Giménez-Lirola L, Wang C, Holtkamp DJ, Main R, Karriker L, Linhares DCL, Breuer M, Goodell C, Baum D.

Vet Sci. 2019 May 29;6(2). pii: E49. doi: 10.3390/vetsci6020049.


Transgenic substitution with Greater Amberjack Seriola dumerili fish insulin 2 in NOD mice reduces beta cell immunogenicity.

Foo KS, Skowronski AA, Baum D, Firdessa-Fite R, Thams S, Shang L, Creusot RJ, LeDuc CA, Egli D, Leibel RL.

Sci Rep. 2019 Mar 21;9(1):4965. doi: 10.1038/s41598-019-40768-3.


Evaluation of the Serologic Cross-Reactivity between Transmissible Gastroenteritis Coronavirus and Porcine Respiratory Coronavirus Using Commercial Blocking Enzyme-Linked Immunosorbent Assay Kits.

Magtoto R, Poonsuk K, Baum D, Zhang J, Chen Q, Ji J, Piñeyro P, Zimmerman J, Giménez-Lirola LG.

mSphere. 2019 Mar 13;4(2). pii: e00017-19. doi: 10.1128/mSphere.00017-19.


Seroprevalence of Senecavirus A in sows and grower-finisher pigs in major swine producing-states in the United States.

Houston E, Giménez-Lirola LG, Magtoto R, Mora-Díaz JC, Baum D, Piñeyro PE.

Prev Vet Med. 2019 Apr 1;165:1-7. doi: 10.1016/j.prevetmed.2019.01.012. Epub 2019 Jan 29.


Magnesium supplementation in the treatment of pseudoxanthoma elasticum: A randomized trial.

Rose S, On SJ, Fuchs W, Chen C, Phelps R, Kornreich D, Haddican M, Singer G, Wong V, Baum D, Vekaria A, Gagliotti M, Huang R, Suárez-Fariñas M, Terry SF, Lebwohl M.

J Am Acad Dermatol. 2019 Jul;81(1):263-265. doi: 10.1016/j.jaad.2019.02.055. Epub 2019 Feb 28. No abstract available.


Mineral surfaces select for longer RNA molecules.

Mizuuchi R, Blokhuis A, Vincent L, Nghe P, Lehman N, Baum D.

Chem Commun (Camb). 2019 Feb 12;55(14):2090-2093. doi: 10.1039/c8cc10319d.


Phospholipase C-Gamma 2 Activity in Familial Steroid-Sensitive Nephrotic Syndrome.

Parker L, Bahat H, Appel MY, Baum DV, Forer R, Pillar N, Goldberg M, Goldman M.

Pediatr Res. 2019 Apr;85(5):719-723. doi: 10.1038/s41390-018-0259-6. Epub 2018 Dec 19.


A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?

Conover JL, Karimi N, Stenz N, Ané C, Grover CE, Skema C, Tate JA, Wolff K, Logan SA, Wendel JF, Baum DA.

J Integr Plant Biol. 2019 Jan;61(1):12-31. doi: 10.1111/jipb.12746.


A randomized placebo-controlled single-center pilot study of the safety and efficacy of apremilast in subjects with moderate-to-severe alopecia areata.

Mikhaylov D, Pavel A, Yao C, Kimmel G, Nia J, Hashim P, Vekaria AS, Taliercio M, Singer G, Karalekas R, Baum D, Mansouri Y, Lebwohl MG, Guttman-Yassky E.

Arch Dermatol Res. 2019 Jan;311(1):29-36. doi: 10.1007/s00403-018-1876-y. Epub 2018 Nov 11.


Targeted killing of TNFR2-expressing tumor cells and Tregs by TNFR2 antagonistic antibodies in advanced Sézary syndrome.

Torrey H, Khodadoust M, Tran L, Baum D, Defusco A, Kim YH, Faustman DL.

Leukemia. 2019 May;33(5):1206-1218. doi: 10.1038/s41375-018-0292-9. Epub 2018 Oct 24.


Interactive Visualization of RNA and DNA Structures.

Lindow N, Baum D, Leborgne M, Hege HC.

IEEE Trans Vis Comput Graph. 2018 Oct 17. doi: 10.1109/TVCG.2018.2864507. [Epub ahead of print]


Exclusivity offers a sound yet practical species criterion for bacteria despite abundant gene flow.

Wright ES, Baum DA.

BMC Genomics. 2018 Oct 3;19(1):724. doi: 10.1186/s12864-018-5099-6.


The effect of chemical clarification of oral fluids on porcine epidemic diarrhea virus antibody responses.

Poonsuk K, Giménez-Lirola LG, Magtoto RL, Ji J, Baum DH, Rademacher CJ, Brown JT, Zhang J, Wang C, Main RG, Zimmerman JJ.

J Vet Diagn Invest. 2018 Nov;30(6):937-941. doi: 10.1177/1040638718798672. Epub 2018 Sep 11.


Baseline IL-22 expression in patients with atopic dermatitis stratifies tissue responses to fezakinumab.

Brunner PM, Pavel AB, Khattri S, Leonard A, Malik K, Rose S, Jim On S, Vekaria AS, Traidl-Hoffmann C, Singer GK, Baum D, Gilleaudeau P, Sullivan-Whalen M, Fuentes-Duculan J, Li X, Zheng X, Estrada Y, Garcet S, Wen HC, Gonzalez J, Coats I, Cueto I, Neumann AU, Lebwohl MG, Krueger JG, Guttman-Yassky E.

J Allergy Clin Immunol. 2019 Jan;143(1):142-154. doi: 10.1016/j.jaci.2018.07.028. Epub 2018 Aug 17.


The origin and early evolution of life in chemical composition space.

Baum DA.

J Theor Biol. 2018 Nov 7;456:295-304. doi: 10.1016/j.jtbi.2018.08.016. Epub 2018 Aug 12.


Effect of chemical clarification of oral fluids on the detection of porcine reproductive and respiratory syndrome virus IgG.

Henao-Díaz YA, Giménez-Lirola L, Poonsuk K, Cheng TY, Wang C, Ji J, Baum DH, Main RG, Zimmerman JJ.

J Vet Diagn Invest. 2018 Sep;30(5):671-677. doi: 10.1177/1040638718789220. Epub 2018 Jul 20.


New Zealand Obese Mice as a Translational Model of Obesity-related Obstructive Sleep Apnea Syndrome.

Baum DM, Morales Rodriguez B, Attali V, Cauhapé M, Arnulf I, Cardot P, Bodineau L, Fiamma MN.

Am J Respir Crit Care Med. 2018 Nov 15;198(10):1336-1339. doi: 10.1164/rccm.201801-0162LE. No abstract available.


Effect of Gender on Chronic Intermittent Hypoxic Fosb Expression in Cardiorespiratory-Related Brain Structures in Mice.

Baum DM, Saussereau M, Jeton F, Planes C, Voituron N, Cardot P, Fiamma MN, Bodineau L.

Front Physiol. 2018 Jun 25;9:788. doi: 10.3389/fphys.2018.00788. eCollection 2018.


An integrated model of alopecia areata biomarkers highlights both TH1 and TH2 upregulation.

Song T, Pavel AB, Wen HC, Malik K, Estrada Y, Gonzalez J, Hashim PW, Nia JK, Baum D, Kimmel G, Singer GK, Krueger JG, Guttman-Yassky E.

J Allergy Clin Immunol. 2018 Nov;142(5):1631-1634.e13. doi: 10.1016/j.jaci.2018.06.029. Epub 2018 Jul 5. No abstract available.


Long-term reduction in hyperglycemia in advanced type 1 diabetes: the value of induced aerobic glycolysis with BCG vaccinations.

Kühtreiber WM, Tran L, Kim T, Dybala M, Nguyen B, Plager S, Huang D, Janes S, Defusco A, Baum D, Zheng H, Faustman DL.

NPJ Vaccines. 2018 Jun 21;3:23. doi: 10.1038/s41541-018-0062-8. eCollection 2018.


Detection of porcine reproductive and respiratory syndrome virus (PRRSV)-specific IgM-IgA in oral fluid samples reveals PRRSV infection in the presence of maternal antibody.

Rotolo ML, Giménez-Lirola L, Ji J, Magtoto R, Henao-Díaz YA, Wang C, Baum DH, Harmon KM, Main RG, Zimmerman JJ.

Vet Microbiol. 2018 Feb;214:13-20. doi: 10.1016/j.vetmic.2017.11.011. Epub 2017 Nov 17.


Efficacy and safety of fezakinumab (an IL-22 monoclonal antibody) in adults with moderate-to-severe atopic dermatitis inadequately controlled by conventional treatments: A randomized, double-blind, phase 2a trial.

Guttman-Yassky E, Brunner PM, Neumann AU, Khattri S, Pavel AB, Malik K, Singer GK, Baum D, Gilleaudeau P, Sullivan-Whalen M, Rose S, Jim On S, Li X, Fuentes-Duculan J, Estrada Y, Garcet S, Traidl-Hoffmann C, Krueger JG, Lebwohl MG.

J Am Acad Dermatol. 2018 May;78(5):872-881.e6. doi: 10.1016/j.jaad.2018.01.016. Epub 2018 Jan 17.


Automated segmentation of complex patterns in biological tissues: Lessons from stingray tessellated cartilage.

Knötel D, Seidel R, Prohaska S, Dean MN, Baum D.

PLoS One. 2017 Dec 13;12(12):e0188018. doi: 10.1371/journal.pone.0188018. eCollection 2017.


Life's Late Digital Revolution and Why It Matters for the Study of the Origins of Life.

Baum DA, Lehman N.

Life (Basel). 2017 Aug 25;7(3). pii: E34. doi: 10.3390/life7030034.


The Rewarding Effect of Pictures with Positive Emotional Connotation upon Perception and Processing of Pleasant Odors-An FMRI Study.

Hummel T, Fark T, Baum D, Warr J, Hummel CB, Schriever VA.

Front Neuroanat. 2017 Mar 21;11:19. doi: 10.3389/fnana.2017.00019. eCollection 2017.


Sampling guidelines for oral fluid-based surveys of group-housed animals.

Rotolo ML, Sun Y, Wang C, Giménez-Lirola L, Baum DH, Gauger PC, Harmon KM, Hoogland M, Main R, Zimmerman JJ.

Vet Microbiol. 2017 Sep;209:20-29. doi: 10.1016/j.vetmic.2017.02.004. Epub 2017 Feb 17.


Reactivity of Porcine Epidemic Diarrhea Virus Structural Proteins to Antibodies against Porcine Enteric Coronaviruses: Diagnostic Implications.

Gimenez-Lirola LG, Zhang J, Carrillo-Avila JA, Chen Q, Magtoto R, Poonsuk K, Baum DH, Piñeyro P, Zimmerman J.

J Clin Microbiol. 2017 May;55(5):1426-1436. doi: 10.1128/JCM.02507-16. Epub 2017 Feb 15.


Targeting TNFR2 with antagonistic antibodies inhibits proliferation of ovarian cancer cells and tumor-associated Tregs.

Torrey H, Butterworth J, Mera T, Okubo Y, Wang L, Baum D, Defusco A, Plager S, Warden S, Huang D, Vanamee E, Foster R, Faustman DL.

Sci Signal. 2017 Jan 17;10(462). pii: eaaf8608. doi: 10.1126/scisignal.aaf8608.


The Presentation of Olfactory-Trigeminal Mixed Stimuli Increases the Response to Subsequent Olfactory Stimuli.

Walliczek-Dworschak U, Poncelet J, Baum D, Baki R, Sinding C, Warr J, Hummel T.

J Agric Food Chem. 2018 Mar 14;66(10):2312-2318. doi: 10.1021/acs.jafc.6b04342. Epub 2017 Jan 9.


Erratum to: An Experimental Framework for Generating Evolvable Chemical Systems in the Laboratory.

Baum DA, Vetsigian K.

Orig Life Evol Biosph. 2017 Dec;47(4):555. doi: 10.1007/s11084-016-9529-7. No abstract available.


An Experimental Framework for Generating Evolvable Chemical Systems in the Laboratory.

Baum DA, Vetsigian K.

Orig Life Evol Biosph. 2017 Dec;47(4):481-497. doi: 10.1007/s11084-016-9526-x. Epub 2016 Nov 18. Erratum in: Orig Life Evol Biosph. 2016 Dec 8;:.


Skeletal muscle-specific overexpression of IGFBP-2 promotes a slower muscle phenotype in healthy but not dystrophic mdx mice and does not affect the dystrophic pathology.

Swiderski K, Martins KJ, Chee A, Trieu J, Naim T, Gehrig SM, Baum DM, Brenmoehl J, Chau L, Koopman R, Gregorevic P, Metzger F, Hoeflich A, Lynch GS.

Growth Horm IGF Res. 2016 Oct - Dec;30-31:1-10. doi: 10.1016/j.ghir.2016.07.002. Epub 2016 Jul 29.


Novel Senecavirus A in Swine with Vesicular Disease, United States, July 2015.

Guo B, Piñeyro PE, Rademacher CJ, Zheng Y, Li G, Yuan J, Hoang H, Gauger PC, Madson DM, Schwartz KJ, Canning PE, Arruda BL, Cooper VL, Baum DH, Linhares DC, Main RG, Yoon KJ.

Emerg Infect Dis. 2016 Jul;22(7):1325-7. doi: 10.3201/eid2207.151758. No abstract available.


Porcine epidemic diarrhea virus (PEDV) detection and antibody response in commercial growing pigs.

Bjustrom-Kraft J, Woodard K, Giménez-Lirola L, Rotolo M, Wang C, Sun Y, Lasley P, Zhang J, Baum D, Gauger P, Main R, Zimmerman J.

BMC Vet Res. 2016 Jun 10;12:99. doi: 10.1186/s12917-016-0725-5.


Serological and Molecular Detection of Senecavirus A Associated with an Outbreak of Swine Idiopathic Vesicular Disease and Neonatal Mortality.

Gimenez-Lirola LG, Rademacher C, Linhares D, Harmon K, Rotolo M, Sun Y, Baum DH, Zimmerman J, Piñeyro P.

J Clin Microbiol. 2016 Aug;54(8):2082-9. doi: 10.1128/JCM.00710-16. Epub 2016 May 25.


Revisiting the phylogeny of Bombacoideae (Malvaceae): Novel relationships, morphologically cohesive clades, and a new tribal classification based on multilocus phylogenetic analyses.

Carvalho-Sobrinho JG, Alverson WS, Alcantara S, Queiroz LP, Mota AC, Baum DA.

Mol Phylogenet Evol. 2016 Aug;101:56-74. doi: 10.1016/j.ympev.2016.05.006. Epub 2016 May 3.


Statistical evidence for common ancestry: Application to primates.

Baum DA, Ané C, Larget B, Solís-Lemus C, Ho LS, Boone P, Drummond CP, Bontrager M, Hunter SJ, Saucier W.

Evolution. 2016 Jun;70(6):1354-63. doi: 10.1111/evo.12934. Epub 2016 May 30.


Clade-specific positive selection on a developmental gene: BRANCHLESS TRICHOME and the evolution of stellate trichomes in Physaria (Brassicaceae).

Mazie AR, Baum DA.

Mol Phylogenet Evol. 2016 Jul;100:31-40. doi: 10.1016/j.ympev.2016.03.027. Epub 2016 Mar 22.


Whole genome duplication in coast redwood (Sequoia sempervirens) and its implications for explaining the rarity of polyploidy in conifers.

Scott AD, Stenz NW, Ingvarsson PK, Baum DA.

New Phytol. 2016 Jul;211(1):186-93. doi: 10.1111/nph.13930. Epub 2016 Mar 21.



Olds JE, Sun Y, Baum DH, Gauger P.

J Zoo Wildl Med. 2015 Dec;46(4):843-9. doi: 10.1638/2015-0063.1.


A comparison of autogenous theories for the origin of eukaryotic cells.

Baum DA.

Am J Bot. 2015 Dec;102(12):1954-65. doi: 10.3732/ajb.1500196. Epub 2015 Dec 7. Review.


Two new species of erect Bryozoa (Gymnolaemata: Cheilostomata) and the application of non-destructive imaging methods for quantitative taxonomy.

Matsuyama K, Titschack J, Baum D, Freiwald A.

Zootaxa. 2015 Sep 21;4020(1):81-100. doi: 10.11646/zootaxa.4020.1.3.


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