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Ligand-Dependent Sodium Ion Dynamics within the A2A Adenosine Receptor: A Molecular Dynamics Study.

Hu X, Smith MD, Humphreys BM, Green AT, Parks JM, Baudry JY, Smith JC.

J Phys Chem B. 2019 Sep 12. doi: 10.1021/acs.jpcb.9b04474. [Epub ahead of print]


Increasing crop heterogeneity enhances multitrophic diversity across agricultural regions.

Sirami C, Gross N, Baillod AB, Bertrand C, Carrié R, Hass A, Henckel L, Miguet P, Vuillot C, Alignier A, Girard J, Batáry P, Clough Y, Violle C, Giralt D, Bota G, Badenhausser I, Lefebvre G, Gauffre B, Vialatte A, Calatayud F, Gil-Tena A, Tischendorf L, Mitchell S, Lindsay K, Georges R, Hilaire S, Recasens J, Solé-Senan XO, Robleño I, Bosch J, Barrientos JA, Ricarte A, Marcos-Garcia MÁ, Miñano J, Mathevet R, Gibon A, Baudry J, Balent G, Poulin B, Burel F, Tscharntke T, Bretagnolle V, Siriwardena G, Ouin A, Brotons L, Martin JL, Fahrig L.

Proc Natl Acad Sci U S A. 2019 Aug 13;116(33):16442-16447. doi: 10.1073/pnas.1906419116. Epub 2019 Jul 29.


Combination of Healthy Lifestyle Factors on the Risk of Hypertension in a Large Cohort of French Adults.

Lelong H, Blacher J, Baudry J, Adriouch S, Galan P, Fezeu L, Hercberg S, Kesse-Guyot E.

Nutrients. 2019 Jul 23;11(7). pii: E1687. doi: 10.3390/nu11071687.


The influence of landscape alterations on changes in ground beetle (Carabidae) and spider (Araneae) functional groups between 1995 and 2013 in an urban fringe of China.

Duan M, Hu W, Liu Y, Yu Z, Li X, Wu P, Zhang F, Shi H, Baudry J.

Sci Total Environ. 2019 Nov 1;689:516-525. doi: 10.1016/j.scitotenv.2019.06.198. Epub 2019 Jun 14.


Improvement of diet sustainability with increased level of organic food in the diet: findings from the BioNutriNet cohort.

Baudry J, Pointereau P, Seconda L, Vidal R, Taupier-Letage B, Langevin B, Allès B, Galan P, Hercberg S, Amiot MJ, Boizot-Szantai C, Hamza O, Cravedi JP, Debrauwer L, Soler LG, Lairon D, Kesse-Guyot E.

Am J Clin Nutr. 2019 Apr 1;109(4):1173-1188. doi: 10.1093/ajcn/nqy361.


Development and validation of an individual sustainable diet index in the NutriNet-Santé study cohort.

Seconda L, Baudry J, Pointereau P, Lacour C, Langevin B, Hercberg S, Lairon D, Allès B, Kesse-Guyot E.

Br J Nutr. 2019 May;121(10):1166-1177. doi: 10.1017/S0007114519000369. Epub 2019 Apr 11.


Some Differences in Nutritional Biomarkers are Detected Between Consumers and Nonconsumers of Organic Foods: Findings from the BioNutriNet Project.

Baudry J, Ducros V, Druesne-Pecollo N, Galan P, Hercberg S, Debrauwer L, Amiot MJ, Lairon D, Kesse-Guyot E.

Curr Dev Nutr. 2018 Nov 15;3(3):nzy090. doi: 10.1093/cdn/nzy090. eCollection 2019 Mar.


Ensemble Docking in Drug Discovery: How Many Protein Configurations from Molecular Dynamics Simulations are Needed To Reproduce Known Ligand Binding?

Evangelista Falcon W, Ellingson SR, Smith JC, Baudry J.

J Phys Chem B. 2019 Jun 27;123(25):5189-5195. doi: 10.1021/acs.jpcb.8b11491. Epub 2019 Feb 12.


Association of Frequency of Organic Food Consumption With Cancer Risk: Findings From the NutriNet-Santé Prospective Cohort Study.

Baudry J, Assmann KE, Touvier M, Allès B, Seconda L, Latino-Martel P, Ezzedine K, Galan P, Hercberg S, Lairon D, Kesse-Guyot E.

JAMA Intern Med. 2018 Dec 1;178(12):1597-1606. doi: 10.1001/jamainternmed.2018.4357. Erratum in: JAMA Intern Med. 2018 Dec 1;178(12):1732.


Prospective Association between Total and Specific Dietary Polyphenol Intakes and Cardiovascular Disease Risk in the Nutrinet-Santé French Cohort.

Adriouch S, Lampuré A, Nechba A, Baudry J, Assmann K, Kesse-Guyot E, Hercberg S, Scalbert A, Touvier M, Fezeu LK.

Nutrients. 2018 Oct 29;10(11). pii: E1587. doi: 10.3390/nu10111587.


Small Molecule Condensin Inhibitors.

Zhao H, Petrushenko ZM, Walker JK, Baudry J, Zgurskaya HI, Rybenkov VV.

ACS Infect Dis. 2018 Dec 14;4(12):1737-1745. doi: 10.1021/acsinfecdis.8b00222. Epub 2018 Oct 22.


Urinary pesticide concentrations in French adults with low and high organic food consumption: results from the general population-based NutriNet-Santé.

Baudry J, Debrauwer L, Durand G, Limon G, Delcambre A, Vidal R, Taupier-Letage B, Druesne-Pecollo N, Galan P, Hercberg S, Lairon D, Cravedi JP, Kesse-Guyot E.

J Expo Sci Environ Epidemiol. 2019 Apr;29(3):366-378. doi: 10.1038/s41370-018-0062-9. Epub 2018 Sep 5.


Erratum: Publisher's Note: "Micropipette-powered droplet based microfluidics" [Biomicrofluidics 12, 044106 (2018)].

Langer K, Bremond N, Boitard L, Baudry J, Bibette J.

Biomicrofluidics. 2018 Aug 2;12(4):049902. doi: 10.1063/1.5049817. eCollection 2018 Jul.


Micropipette-powered droplet based microfluidics.

Langer K, Bremond N, Boitard L, Baudry J, Bibette J.

Biomicrofluidics. 2018 Jul 10;12(4):044106. doi: 10.1063/1.5037795. eCollection 2018 Jul. Erratum in: Biomicrofluidics. 2018 Aug 02;12(4):049902.


Adaptive response of yeast cells to triggered toxicity of phosphoribulokinase.

Rouzeau C, Dagkesamanskaya A, Langer K, Bibette J, Baudry J, Pompon D, Anton-Leberre V.

Res Microbiol. 2018 Jul - Aug;169(6):335-342. doi: 10.1016/j.resmic.2018.06.002. Epub 2018 Jun 30.


Is organic food consumption associated with life satisfaction? A cross-sectional analysis from the NutriNet-Santé study.

Seconda L, Péneau S, Bénard M, Allès B, Hercberg S, Galan P, Lairon D, Baudry J, Kesse-Guyot E.

Prev Med Rep. 2017 Oct 31;8:190-196. doi: 10.1016/j.pmedr.2017.10.014. eCollection 2017 Dec.


Corrigendum: Environmental Impacts of Plant-Based Diets: How Does Organic Food Consumption Contribute to Environmental Sustainability?

Lacour C, Seconda L, Allès B, Hercberg S, Langevin B, Pointereau P, Lairon D, Baudry J, Kesse-Guyot E.

Front Nutr. 2018 Apr 18;5:26. doi: 10.3389/fnut.2018.00026. eCollection 2018.


Examining inventions, shaping property: The savants and the French patent system.

Baudry J.

Hist Sci. 2019 Mar;57(1):62-80. doi: 10.1177/0073275318767233. Epub 2018 Apr 26.


Computationally identified novel agonists for GPRC6A.

Pi M, Kapoor K, Ye R, Hwang DJ, Miller DD, Smith JC, Baudry J, Quarles LD.

PLoS One. 2018 Apr 23;13(4):e0195980. doi: 10.1371/journal.pone.0195980. eCollection 2018.


Ensemble Docking in Drug Discovery.

Amaro RE, Baudry J, Chodera J, Demir Ö, McCammon JA, Miao Y, Smith JC.

Biophys J. 2018 May 22;114(10):2271-2278. doi: 10.1016/j.bpj.2018.02.038. Epub 2018 Mar 30. Review.


Use of photoswitchable fluorescent proteins for droplet-based microfluidic screening.

Dagkesamanskaya A, Langer K, Tauzin AS, Rouzeau C, Lestrade D, Potocki-Veronese G, Boitard L, Bibette J, Baudry J, Pompon D, Anton-Leberre V.

J Microbiol Methods. 2018 Apr;147:59-65. doi: 10.1016/j.mimet.2018.03.001. Epub 2018 Mar 6.


Environmental Impacts of Plant-Based Diets: How Does Organic Food Consumption Contribute to Environmental Sustainability?

Lacour C, Seconda L, Allès B, Hercberg S, Langevin B, Pointereau P, Lairon D, Baudry J, Kesse-Guyot E.

Front Nutr. 2018 Feb 9;5:8. doi: 10.3389/fnut.2018.00008. eCollection 2018. Erratum in: Front Nutr. 2018 Apr 18;5:26.


GPCR6A Is a Molecular Target for the Natural Products Gallate and EGCG in Green Tea.

Pi M, Kapoor K, Ye R, Smith JC, Baudry J, Quarles LD.

Mol Nutr Food Res. 2018 Apr;62(8):e1700770. doi: 10.1002/mnfr.201700770. Epub 2018 Apr 14.


Mindfulness Is Associated with the Metabolic Syndrome among Individuals with a Depressive Symptomatology.

Guyot E, Baudry J, Hercberg S, Galan P, Kesse-Guyot E, Péneau S.

Nutrients. 2018 Feb 17;10(2). pii: E232. doi: 10.3390/nu10020232.


Landscape configurational heterogeneity by small-scale agriculture, not crop diversity, maintains pollinators and plant reproduction in western Europe.

Hass AL, Kormann UG, Tscharntke T, Clough Y, Baillod AB, Sirami C, Fahrig L, Martin JL, Baudry J, Bertrand C, Bosch J, Brotons L, Burel F, Georges R, Giralt D, Marcos-García MÁ, Ricarte A, Siriwardena G, Batáry P.

Proc Biol Sci. 2018 Feb 14;285(1872). pii: 20172242. doi: 10.1098/rspb.2017.2242.


Association between time perspective and organic food consumption in a large sample of adults.

Bénard M, Baudry J, Méjean C, Lairon D, Giudici KV, Etilé F, Reach G, Hercberg S, Kesse-Guyot E, Péneau S.

Nutr J. 2018 Jan 5;17(1):1. doi: 10.1186/s12937-017-0311-0.


Binding Mechanisms of Electron Transport Proteins with Cyanobacterial Photosystem I: An Integrated Computational and Experimental Model.

Kapoor K, Cashman DJ, Nientimp L, Bruce BD, Baudry J.

J Phys Chem B. 2018 Jan 25;122(3):1026-1036. doi: 10.1021/acs.jpcb.7b08307. Epub 2018 Jan 16.


Polycystin-1 interacts with TAZ to stimulate osteoblastogenesis and inhibit adipogenesis.

Xiao Z, Baudry J, Cao L, Huang J, Chen H, Yates CR, Li W, Dong B, Waters CM, Smith JC, Quarles LD.

J Clin Invest. 2018 Jan 2;128(1):157-174. doi: 10.1172/JCI93725. Epub 2017 Nov 27.


Ensemble docking to difficult targets in early-stage drug discovery: Methodology and application to fibroblast growth factor 23.

Velazquez HA, Riccardi D, Xiao Z, Quarles LD, Yates CR, Baudry J, Smith JC.

Chem Biol Drug Des. 2018 Feb;91(2):491-504. doi: 10.1111/cbdd.13110. Epub 2017 Nov 3.


Comparison of Sociodemographic and Nutritional Characteristics between Self-Reported Vegetarians, Vegans, and Meat-Eaters from the NutriNet-Santé Study.

Allès B, Baudry J, Méjean C, Touvier M, Péneau S, Hercberg S, Kesse-Guyot E.

Nutrients. 2017 Sep 15;9(9). pii: E1023. doi: 10.3390/nu9091023.


Food choice motives including sustainability during purchasing are associated with a healthy dietary pattern in French adults.

Allès B, Péneau S, Kesse-Guyot E, Baudry J, Hercberg S, Méjean C.

Nutr J. 2017 Sep 18;16(1):58. doi: 10.1186/s12937-017-0279-9.


Single-cell deep phenotyping of IgG-secreting cells for high-resolution immune monitoring.

Eyer K, Doineau RCL, Castrillon CE, Briseño-Roa L, Menrath V, Mottet G, England P, Godina A, Brient-Litzler E, Nizak C, Jensen A, Griffiths AD, Bibette J, Bruhns P, Baudry J.

Nat Biotechnol. 2017 Oct;35(10):977-982. doi: 10.1038/nbt.3964. Epub 2017 Sep 11.


The quinic acid derivative KZ-41 prevents glucose-induced caspase-3 activation in retinal endothelial cells through an IGF-1 receptor dependent mechanism.

He H, Weir RL, Toutounchian JJ, Pagadala J, Steinle JJ, Baudry J, Miller DD, Yates CR.

PLoS One. 2017 Aug 10;12(8):e0180808. doi: 10.1371/journal.pone.0180808. eCollection 2017.


Association between organic food consumption and metabolic syndrome: cross-sectional results from the NutriNet-Santé study.

Baudry J, Lelong H, Adriouch S, Julia C, Allès B, Hercberg S, Touvier M, Lairon D, Galan P, Kesse-Guyot E.

Eur J Nutr. 2018 Oct;57(7):2477-2488. doi: 10.1007/s00394-017-1520-1. Epub 2017 Aug 2.


Individual and Combined Effects of Dietary Factors on Risk of Incident Hypertension: Prospective Analysis From the NutriNet-Santé Cohort.

Lelong H, Blacher J, Baudry J, Adriouch S, Galan P, Fezeu L, Hercberg S, Kesse-Guyot E.

Hypertension. 2017 Oct;70(4):712-720. doi: 10.1161/HYPERTENSIONAHA.117.09622. Epub 2017 Jul 31.


Thermophilic Enzyme or Mesophilic Enzyme with Enhanced Thermostability: Can We Draw a Line?

Jing X, Evangelista Falcon W, Baudry J, Serpersu EH.

J Phys Chem B. 2017 Jul 27;121(29):7086-7094. doi: 10.1021/acs.jpcb.7b04519. Epub 2017 Jul 19.


Identification and Structure-Activity Relationships of Novel Compounds that Potentiate the Activities of Antibiotics in Escherichia coli.

Haynes KM, Abdali N, Jhawar V, Zgurskaya HI, Parks JM, Green AT, Baudry J, Rybenkov VV, Smith JC, Walker JK.

J Med Chem. 2017 Jul 27;60(14):6205-6219. doi: 10.1021/acs.jmedchem.7b00453. Epub 2017 Jul 11.


Compliance with Nutritional and Lifestyle Recommendations in 13,000 Patients with a Cardiometabolic Disease from the Nutrinet-Santé Study.

Adriouch S, Lelong H, Kesse-Guyot E, Baudry J, Lampuré A, Galan P, Hercberg S, Touvier M, Fezeu LK.

Nutrients. 2017 May 26;9(6). pii: E546. doi: 10.3390/nu9060546.


Modifications in dietary and alcohol intakes between before and after cancer diagnosis: Results from the prospective population-based NutriNet-Santé cohort.

Fassier P, Zelek L, Lécuyer L, Bachmann P, Touillaud M, Druesne-Pecollo N, Galan P, Cohen P, Hoarau H, Latino-Martel P, Kesse-Guyot E, Baudry J, Hercberg S, Deschasaux M, Touvier M.

Int J Cancer. 2017 Aug 1;141(3):457-470. doi: 10.1002/ijc.30704. Epub 2017 May 15.


Prospective association between consumption frequency of organic food and body weight change, risk of overweight or obesity: results from the NutriNet-Santé Study.

Kesse-Guyot E, Baudry J, Assmann KE, Galan P, Hercberg S, Lairon D.

Br J Nutr. 2017 Jan;117(2):325-334. doi: 10.1017/S0007114517000058. Epub 2017 Feb 7.


Food Choice Motives When Purchasing in Organic and Conventional Consumer Clusters: Focus on Sustainable Concerns (The NutriNet-Santé Cohort Study).

Baudry J, Péneau S, Allès B, Touvier M, Hercberg S, Galan P, Amiot MJ, Lairon D, Méjean C, Kesse-Guyot E.

Nutrients. 2017 Jan 24;9(2). pii: E88. doi: 10.3390/nu9020088.


Assessment of the Sustainability of the Mediterranean Diet Combined with Organic Food Consumption: An Individual Behaviour Approach.

Seconda L, Baudry J, Allès B, Hamza O, Boizot-Szantai C, Soler LG, Galan P, Hercberg S, Lairon D, Kesse-Guyot E.

Nutrients. 2017 Jan 12;9(1). pii: E61. doi: 10.3390/nu9010061.


Interparticle Capillary Forces at a Fluid-Fluid Interface with Strong Polymer-Induced Aging.

Cappelli S, de Jong AM, Baudry J, Prins MW.

Langmuir. 2017 Jan 24;33(3):696-705. doi: 10.1021/acs.langmuir.6b03910. Epub 2017 Jan 12.


Novel Small Molecule JP-153 Targets the Src-FAK-Paxillin Signaling Complex to Inhibit VEGF-Induced Retinal Angiogenesis.

Toutounchian JJ, Pagadala J, Miller DD, Baudry J, Park F, Chaum E, Morales-Tirado V, Yates CR.

Mol Pharmacol. 2017 Jan;91(1):1-13. Epub 2016 Nov 9. Erratum in: Mol Pharmacol. 2017 Dec;92 (6):627.


Structure-based design of broadly protective group a streptococcal M protein-based vaccines.

Dale JB, Smeesters PR, Courtney HS, Penfound TA, Hohn CM, Smith JC, Baudry JY.

Vaccine. 2017 Jan 3;35(1):19-26. doi: 10.1016/j.vaccine.2016.11.065. Epub 2016 Nov 24.


A computationally identified compound antagonizes excess FGF-23 signaling in renal tubules and a mouse model of hypophosphatemia.

Xiao Z, Riccardi D, Velazquez HA, Chin AL, Yates CR, Carrick JD, Smith JC, Baudry J, Quarles LD.

Sci Signal. 2016 Nov 22;9(455):ra113. Erratum in: Sci Signal. 2016 Dec 06;9(457):er3.


Reviving Antibiotics: Efflux Pump Inhibitors That Interact with AcrA, a Membrane Fusion Protein of the AcrAB-TolC Multidrug Efflux Pump.

Abdali N, Parks JM, Haynes KM, Chaney JL, Green AT, Wolloscheck D, Walker JK, Rybenkov VV, Baudry J, Smith JC, Zgurskaya HI.

ACS Infect Dis. 2017 Jan 13;3(1):89-98. doi: 10.1021/acsinfecdis.6b00167. Epub 2016 Nov 2.


Highly Dynamic Anion-Quadrupole Networks in Proteins.

Kapoor K, Duff MR, Upadhyay A, Bucci JC, Saxton AM, Hinde RJ, Howell EE, Baudry J.

Biochemistry. 2016 Nov 1;55(43):6056-6069. Epub 2016 Oct 24.


Dietary intakes and diet quality according to levels of organic food consumption by French adults: cross-sectional findings from the NutriNet-Santé Cohort Study.

Baudry J, Allès B, Péneau S, Touvier M, Méjean C, Hercberg S, Galan P, Lairon D, Kesse-Guyot E.

Public Health Nutr. 2017 Mar;20(4):638-648. doi: 10.1017/S1368980016002718. Epub 2016 Oct 12.


Ensemble-based docking: From hit discovery to metabolism and toxicity predictions.

Evangelista W, Weir RL, Ellingson SR, Harris JB, Kapoor K, Smith JC, Baudry J.

Bioorg Med Chem. 2016 Oct 15;24(20):4928-4935. doi: 10.1016/j.bmc.2016.07.064. Epub 2016 Jul 29.

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