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Items: 1 to 50 of 75

1.

Expression of Myoepithelial Markers in Mammary Carcinomas of 119 Pet Rabbits.

Degner S, Schoon HA, Degner S, Baudis M, Schandelmaier C, Aupperle-Lellbach H, Schöniger S.

Animals (Basel). 2019 Sep 28;9(10). pii: E740. doi: 10.3390/ani9100740.

2.

Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022.

Saunders G, Baudis M, Becker R, Beltran S, Béroud C, Birney E, Brooksbank C, Brunak S, Van den Bulcke M, Drysdale R, Capella-Gutierrez S, Flicek P, Florindi F, Goodhand P, Gut I, Heringa J, Holub P, Hooyberghs J, Juty N, Keane TM, Korbel JO, Lappalainen I, Leskosek B, Matthijs G, Mayrhofer MT, Metspalu A, Navarro A, Newhouse S, Nyrönen T, Page A, Persson B, Palotie A, Parkinson H, Rambla J, Salgado D, Steinfelder E, Swertz MA, Valencia A, Varma S, Blomberg N, Scollen S.

Nat Rev Genet. 2019 Nov;20(11):702. doi: 10.1038/s41576-019-0178-3.

PMID:
31520075
3.

Plant species' range type determines local responses to biotic interactions and land use.

Welk A, Welk E, Baudis M, Böckelmann J, Bruelheide H.

Ecology. 2019 Sep 11:e02890. doi: 10.1002/ecy.2890. [Epub ahead of print]

PMID:
31509229
4.

Leveraging European infrastructures to access 1 million human genomes by 2022.

Saunders G, Baudis M, Becker R, Beltran S, Béroud C, Birney E, Brooksbank C, Brunak S, Van den Bulcke M, Drysdale R, Capella-Gutierrez S, Flicek P, Florindi F, Goodhand P, Gut I, Heringa J, Holub P, Hooyberghs J, Juty N, Keane TM, Korbel JO, Lappalainen I, Leskosek B, Matthijs G, Mayrhofer MT, Metspalu A, Navarro A, Newhouse S, Nyrönen T, Page A, Persson B, Palotie A, Parkinson H, Rambla J, Salgado D, Steinfelder E, Swertz MA, Valencia A, Varma S, Blomberg N, Scollen S.

Nat Rev Genet. 2019 Nov;20(11):693-701. doi: 10.1038/s41576-019-0156-9. Epub 2019 Aug 27. Review. Erratum in: Nat Rev Genet. 2019 Sep 13;:.

PMID:
31455890
5.

Publisher Correction: Federated discovery and sharing of genomic data using Beacons.

Fiume M, Cupak M, Keenan S, Rambla J, de la Torre S, Dyke SOM, Brookes AJ, Carey K, Lloyd D, Goodhand P, Haeussler M, Baudis M, Stockinger H, Dolman L, Lappalainen I, Törnroos J, Linden M, Spalding JD, Ur-Rehman S, Page A, Flicek P, Sherry S, Haussler D, Varma S, Saunders G, Scollen S.

Nat Biotechnol. 2019 Apr;37(4):480. doi: 10.1038/s41587-019-0094-2.

PMID:
30894680
6.

Federated discovery and sharing of genomic data using Beacons.

Fiume M, Cupak M, Keenan S, Rambla J, de la Torre S, Dyke SOM, Brookes AJ, Carey K, Lloyd D, Goodhand P, Haeussler M, Baudis M, Stockinger H, Dolman L, Lappalainen I, Törnroos J, Linden M, Spalding JD, Ur-Rehman S, Page A, Flicek P, Sherry S, Haussler D, Varma S, Saunders G, Scollen S.

Nat Biotechnol. 2019 Mar;37(3):220-224. doi: 10.1038/s41587-019-0046-x. No abstract available. Erratum in: Nat Biotechnol. 2019 Mar 20;:.

7.

DNA copy number imbalances in primary cutaneous lymphomas.

Gug G, Huang Q, Chiticariu E, Solovan C, Baudis M.

J Eur Acad Dermatol Venereol. 2019 Jun;33(6):1062-1075. doi: 10.1111/jdv.15442. Epub 2019 Mar 14.

PMID:
30659659
8.

Mountains and Chasms: Surveying the Oncogenomic Publication Landscape.

Carrio-Cordo P, Baudis M.

Oncology. 2018 Oct 26:1-12. doi: 10.1159/000493192. [Epub ahead of print] Review.

9.

Registered access: authorizing data access.

Dyke SOM, Linden M, Lappalainen I, De Argila JR, Carey K, Lloyd D, Spalding JD, Cabili MN, Kerry G, Foreman J, Cutts T, Shabani M, Rodriguez LL, Haeussler M, Walsh B, Jiang X, Wang S, Perrett D, Boughtwood T, Matern A, Brookes AJ, Cupak M, Fiume M, Pandya R, Tulchinsky I, Scollen S, Törnroos J, Das S, Evans AC, Malin BA, Beck S, Brenner SE, Nyrönen T, Blomberg N, Firth HV, Hurles M, Philippakis AA, Rätsch G, Brudno M, Boycott KM, Rehm HL, Baudis M, Sherry ST, Kato K, Knoppers BM, Baker D, Flicek P.

Eur J Hum Genet. 2018 Dec;26(12):1721-1731. doi: 10.1038/s41431-018-0219-y. Epub 2018 Aug 2.

10.

segment_liftover : a Python tool to convert segments between genome assemblies.

Gao B, Huang Q, Baudis M.

Version 2. F1000Res. 2018 Mar 14 [revised 2018 Jan 1];7:319. doi: 10.12688/f1000research.14148.2. eCollection 2018.

11.

Krüppel-Like Factor 10 participates in cervical cancer immunoediting through transcriptional regulation of Pregnancy-Specific Beta-1 Glycoproteins.

Marrero-Rodríguez D, Taniguchi-Ponciano K, Subramaniam M, Hawse JR, Pitel KS, Arreola-De la Cruz H, Huerta-Padilla V, Ponce-Navarrete G, Figueroa-Corona MDP, Gomez-Virgilio L, Martinez-Cuevas TI, Mendoza-Rodriguez M, Rodriguez-Esquivel M, Romero-Morelos P, Ramirez-Salcedo J, Baudis M, Meraz-Rios M, Jimenez-Vega F, Salcedo M.

Sci Rep. 2018 Jun 21;8(1):9445. doi: 10.1038/s41598-018-27711-8.

12.

Integrated Molecular Meta-Analysis of 1,000 Pediatric High-Grade and Diffuse Intrinsic Pontine Glioma.

Mackay A, Burford A, Carvalho D, Izquierdo E, Fazal-Salom J, Taylor KR, Bjerke L, Clarke M, Vinci M, Nandhabalan M, Temelso S, Popov S, Molinari V, Raman P, Waanders AJ, Han HJ, Gupta S, Marshall L, Zacharoulis S, Vaidya S, Mandeville HC, Bridges LR, Martin AJ, Al-Sarraj S, Chandler C, Ng HK, Li X, Mu K, Trabelsi S, Brahim DH, Kisljakov AN, Konovalov DM, Moore AS, Carcaboso AM, Sunol M, de Torres C, Cruz O, Mora J, Shats LI, Stavale JN, Bidinotto LT, Reis RM, Entz-Werle N, Farrell M, Cryan J, Crimmins D, Caird J, Pears J, Monje M, Debily MA, Castel D, Grill J, Hawkins C, Nikbakht H, Jabado N, Baker SJ, Pfister SM, Jones DTW, Fouladi M, von Bueren AO, Baudis M, Resnick A, Jones C.

Cancer Cell. 2017 Oct 9;32(4):520-537.e5. doi: 10.1016/j.ccell.2017.08.017. Epub 2017 Sep 28.

13.

CNARA: reliability assessment for genomic copy number profiles.

Ai N, Cai H, Solovan C, Baudis M.

BMC Genomics. 2016 Oct 12;17(1):799.

14.

PKCα and HMGB1 antagonistically control hydrogen peroxide-induced poly-ADP-ribose formation.

Andersson A, Bluwstein A, Kumar N, Teloni F, Traenkle J, Baudis M, Altmeyer M, Hottiger MO.

Nucleic Acids Res. 2016 Sep 19;44(16):7630-45. doi: 10.1093/nar/gkw442. Epub 2016 May 19.

15.

Genomic instability of osteosarcoma cell lines in culture: impact on the prediction of metastasis relevant genes.

Muff R, Rath P, Ram Kumar RM, Husmann K, Born W, Baudis M, Fuchs B.

PLoS One. 2015 May 19;10(5):e0125611. doi: 10.1371/journal.pone.0125611. eCollection 2015.

16.

Correction: Soil bacterial community structure responses to precipitation reduction and forest management in forest ecosystems across Germany.

Felsmann K, Baudis M, Gimbel K, Kayler ZE, Ellerbrock R, Bruehlheide H, Bruckhoff J, Welk E, Puhlmann H, Weiler M, Gessler A, Ulrich A.

PLoS One. 2015 Apr 30;10(4):e0127608. doi: 10.1371/journal.pone.0127608. eCollection 2015. No abstract available.

17.

Soil bacterial community structure responses to precipitation reduction and forest management in forest ecosystems across Germany.

Felsmann K, Baudis M, Gimbel K, Kayler ZE, Ellerbrock R, Bruelheide H, Bruckhoff J, Welk E, Puhlmann H, Weiler M, Gessler A, Ulrich A.

PLoS One. 2015 Apr 14;10(4):e0122539. doi: 10.1371/journal.pone.0122539. eCollection 2015. Erratum in: PLoS One. 2015;10(4):e0127608. Bruehlheide, Helge [corrected to Bruelheide, Helge].

18.

Biopsying parapsoriasis: quo vadis? Are morphological stains enough or are ancillary tests needed?

Baderca F, Chiticariu E, Baudis M, Solovan C.

Rom J Morphol Embryol. 2014;55(3 Suppl):1085-92.

19.

arrayMap 2014: an updated cancer genome resource.

Cai H, Gupta S, Rath P, Ai N, Baudis M.

Nucleic Acids Res. 2015 Jan;43(Database issue):D825-30. doi: 10.1093/nar/gku1123. Epub 2014 Nov 26.

20.

Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens.

Cai H, Kumar N, Bagheri HC, von Mering C, Robinson MD, Baudis M.

BMC Genomics. 2014 Jan 29;15:82. doi: 10.1186/1471-2164-15-82.

21.

Progenetix: 12 years of oncogenomic data curation.

Cai H, Kumar N, Ai N, Gupta S, Rath P, Baudis M.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1055-62. doi: 10.1093/nar/gkt1108. Epub 2013 Nov 12.

22.

SIL1 mutations and clinical spectrum in patients with Marinesco-Sjogren syndrome.

Krieger M, Roos A, Stendel C, Claeys KG, Sonmez FM, Baudis M, Bauer P, Bornemann A, de Goede C, Dufke A, Finkel RS, Goebel HH, Häussler M, Kingston H, Kirschner J, Medne L, Muschke P, Rivier F, Rudnik-Schöneborn S, Spengler S, Inzana F, Stanzial F, Benedicenti F, Synofzik M, Lia Taratuto A, Pirra L, Tay SK, Topaloglu H, Uyanik G, Wand D, Williams D, Zerres K, Weis J, Senderek J.

Brain. 2013 Dec;136(Pt 12):3634-44. doi: 10.1093/brain/awt283. Epub 2013 Oct 30.

23.

Recurrent loss of heterozygosity in 1p36 associated with TNFRSF14 mutations in IRF4 translocation negative pediatric follicular lymphomas.

Martin-Guerrero I, Salaverria I, Burkhardt B, Szczepanowski M, Baudis M, Bens S, de Leval L, Garcia-Orad A, Horn H, Lisfeld J, Pellissery S, Klapper W, Oschlies I, Siebert R.

Haematologica. 2013 Aug;98(8):1237-41. doi: 10.3324/haematol.2012.073916. Epub 2013 Feb 26.

24.

PKC signaling prevents irradiation-induced apoptosis of primary human fibroblasts.

Bluwstein A, Kumar N, Léger K, Traenkle J, Oostrum Jv, Rehrauer H, Baudis M, Hottiger MO.

Cell Death Dis. 2013 Feb 14;4:e498. doi: 10.1038/cddis.2013.15.

25.

High resolution copy number analysis of IRF4 translocation-positive diffuse large B-cell and follicular lymphomas.

Salaverria I, Martin-Guerrero I, Burkhardt B, Kreuz M, Zenz T, Oschlies I, Arnold N, Baudis M, Bens S, García-Orad A, Lisfeld J, Schwaenen C, Szczepanowski M, Wessendorf S, Pfreundschuh M, Trümper L, Klapper W, Siebert R.

Genes Chromosomes Cancer. 2013 Feb;52(2):150-5. doi: 10.1002/gcc.22014. Epub 2012 Oct 17.

PMID:
23073988
26.

Specific genomic regions are differentially affected by copy number alterations across distinct cancer types, in aggregated cytogenetic data.

Kumar N, Cai H, von Mering C, Baudis M.

PLoS One. 2012;7(8):e43689. doi: 10.1371/journal.pone.0043689. Epub 2012 Aug 24.

27.

Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome.

Beleut M, Zimmermann P, Baudis M, Bruni N, Bühlmann P, Laule O, Luu VD, Gruissem W, Schraml P, Moch H.

BMC Cancer. 2012 Jul 23;12:310. doi: 10.1186/1471-2407-12-310.

28.

DNA copy number alterations in central primitive neuroectodermal tumors and tumors of the pineal region: an international individual patient data meta-analysis.

von Bueren AO, Gerss J, Hagel C, Cai H, Remke M, Hasselblatt M, Feuerstein BG, Pernet S, Delattre O, Korshunov A, Rutkowski S, Pfister SM, Baudis M.

J Neurooncol. 2012 Sep;109(2):415-23. doi: 10.1007/s11060-012-0911-7. Epub 2012 Jul 7.

29.

2p21 Deletions in hypotonia-cystinuria syndrome.

Eggermann T, Spengler S, Venghaus A, Denecke B, Zerres K, Baudis M, Ensenauer R.

Eur J Med Genet. 2012 Oct;55(10):561-3. doi: 10.1016/j.ejmg.2012.06.008. Epub 2012 Jul 17.

PMID:
22766003
30.

Molecular karyotyping as a relevant diagnostic tool in children with growth retardation with Silver-Russell features.

Spengler S, Begemann M, Ortiz Brüchle N, Baudis M, Denecke B, Kroisel PM, Oehl-Jaschkowitz B, Schulze B, Raabe-Meyer G, Spaich C, Blümel P, Jauch A, Moog U, Zerres K, Eggermann T.

J Pediatr. 2012 Nov;161(5):933-42. doi: 10.1016/j.jpeds.2012.04.045. Epub 2012 Jun 8.

PMID:
22683032
31.

arrayMap: a reference resource for genomic copy number imbalances in human malignancies.

Cai H, Kumar N, Baudis M.

PLoS One. 2012;7(5):e36944. doi: 10.1371/journal.pone.0036944. Epub 2012 May 18.

32.

Improved multiplex ligation-dependent probe amplification analysis identifies a deleterious PMS2 allele generated by recombination with crossover between PMS2 and PMS2CL.

Wernstedt A, Valtorta E, Armelao F, Togni R, Girlando S, Baudis M, Heinimann K, Messiaen L, Staehli N, Zschocke J, Marra G, Wimmer K.

Genes Chromosomes Cancer. 2012 Sep;51(9):819-31. doi: 10.1002/gcc.21966. Epub 2012 May 14.

33.

Losses at chromosome 4q are associated with poor survival in operable ductal pancreatic adenocarcinoma.

Luebke AM, Baudis M, Matthaei H, Vashist YK, Verde PE, Hosch SB, Erbersdobler A, Klein CA, Izbicki JR, Knoefel WT, Stoecklein NH.

Pancreatology. 2012 Jan-Feb;12(1):16-22. doi: 10.1016/j.pan.2011.11.001. Epub 2011 Nov 20.

PMID:
22487468
34.

CDCOCA: a statistical method to define complexity dependence of co-occuring chromosomal aberrations.

Kumar N, Rehrauer H, Cai H, Baudis M.

BMC Med Genomics. 2011 Mar 3;4:21. doi: 10.1186/1755-8794-4-21.

35.

Silver-Russell patients showing a broad range of ICR1 and ICR2 hypomethylation in different tissues.

Begemann M, Spengler S, Kanber D, Haake A, Baudis M, Leisten I, Binder G, Markus S, Rupprecht T, Segerer H, Fricke-Otto S, Mühlenberg R, Siebert R, Buiting K, Eggermann T.

Clin Genet. 2011 Jul;80(1):83-8. doi: 10.1111/j.1399-0004.2010.01514.x. Epub 2010 Jul 22.

PMID:
20738330
36.

MUC1 oncogene amplification correlates with protein overexpression in invasive breast carcinoma cells.

Lacunza E, Baudis M, Colussi AG, Segal-Eiras A, Croce MV, Abba MC.

Cancer Genet Cytogenet. 2010 Sep;201(2):102-10. doi: 10.1016/j.cancergencyto.2010.05.015.

37.

Chromosome 11p15 duplication in Silver-Russell syndrome due to a maternally inherited translocation t(11;15).

Eggermann T, Spengler S, Bachmann N, Baudis M, Mau-Holzmann UA, Singer S, Rossier E.

Am J Med Genet A. 2010 Jun;152A(6):1484-7. doi: 10.1002/ajmg.a.33398.

PMID:
20503324
38.

Identification of a 21q22 duplication in a Silver-Russell syndrome patient further narrows down the Down syndrome critical region.

Eggermann T, Schönherr N, Spengler S, Jäger S, Denecke B, Binder G, Baudis M.

Am J Med Genet A. 2010 Feb;152A(2):356-9. doi: 10.1002/ajmg.a.33217.

PMID:
20101688
39.

Increased expression of cellular retinol-binding protein 1 in laryngeal squamous cell carcinoma.

Peralta R, Baudis M, Vazquez G, Juárez S, Ortiz R, Decanini H, Hernandez D, Gallegos F, Valdivia A, Piña P, Salcedo M.

J Cancer Res Clin Oncol. 2010 Jun;136(6):931-8. doi: 10.1007/s00432-009-0735-9. Epub 2010 Jan 7.

PMID:
20054560
40.

Submicroscopic chromosomal imbalances in idiopathic Silver-Russell syndrome (SRS): the SRS phenotype overlaps with the 12q14 microdeletion syndrome.

Spengler S, Schönherr N, Binder G, Wollmann HA, Fricke-Otto S, Mühlenberg R, Denecke B, Baudis M, Eggermann T.

J Med Genet. 2010 May;47(5):356-60. doi: 10.1136/jmg.2009.070052. Epub 2009 Sep 16.

41.

Quantifying cancer progression with conjunctive Bayesian networks.

Gerstung M, Baudis M, Moch H, Beerenwinkel N.

Bioinformatics. 2009 Nov 1;25(21):2809-15. doi: 10.1093/bioinformatics/btp505. Epub 2009 Aug 19.

42.

Inferring progression models for CGH data.

Liu J, Bandyopadhyay N, Ranka S, Baudis M, Kahveci T.

Bioinformatics. 2009 Sep 1;25(17):2208-15. doi: 10.1093/bioinformatics/btp365. Epub 2009 Jun 15.

43.

Recurrent loss, but lack of mutations, of the SMARCB1 tumor suppressor gene in T-cell prolymphocytic leukemia with TCL1A-TCRAD juxtaposition.

Bug S, Dürig J, Oyen F, Klein-Hitpass L, Martin-Subero JI, Harder L, Baudis M, Arnold N, Kordes U, Dührsen U, Schneppenheim R, Siebert R.

Cancer Genet Cytogenet. 2009 Jul;192(1):44-7. doi: 10.1016/j.cancergencyto.2009.03.001.

PMID:
19480937
44.

Translocations involving 8q24 in Burkitt lymphoma and other malignant lymphomas: a historical review of cytogenetics in the light of todays knowledge.

Boerma EG, Siebert R, Kluin PM, Baudis M.

Leukemia. 2009 Feb;23(2):225-34. doi: 10.1038/leu.2008.281. Epub 2008 Oct 16. Review.

PMID:
18923440
45.

Chromosomal changes characterize head and neck cancer with poor prognosis.

Bauer VL, Braselmann H, Henke M, Mattern D, Walch A, Unger K, Baudis M, Lassmann S, Huber R, Wienberg J, Werner M, Zitzelsberger HF.

J Mol Med (Berl). 2008 Dec;86(12):1353-65. doi: 10.1007/s00109-008-0397-0. Epub 2008 Sep 23.

PMID:
18810378
46.

A 10.7 Mb interstitial deletion of 13q21 without phenotypic effect defines a further non-pathogenic euchromatic variant.

Roos A, Elbracht M, Baudis M, Senderek J, Schönherr N, Eggermann T, Schüler HM.

Am J Med Genet A. 2008 Sep 15;146A(18):2417-20. doi: 10.1002/ajmg.a.32465.

PMID:
18698619
47.

Recurrent loss of the Y chromosome and homozygous deletions within the pseudoautosomal region 1: association with male predominance in mantle cell lymphoma.

Nieländer I, Martín-Subero JI, Wagner F, Baudis M, Gesk S, Harder L, Hasenclever D, Klapper W, Kreuz M, Pott C, Martinez-Climent JA, Dreyling M, Arnold N, Siebert R.

Haematologica. 2008 Jun;93(6):949-50. doi: 10.3324/haematol.12656. No abstract available.

48.

Comprehensive characterization of genomic aberrations in gangliogliomas by CGH, array-based CGH and interphase FISH.

Hoischen A, Ehrler M, Fassunke J, Simon M, Baudis M, Landwehr C, Radlwimmer B, Lichter P, Schramm J, Becker AJ, Weber RG.

Brain Pathol. 2008 Jul;18(3):326-37. doi: 10.1111/j.1750-3639.2008.00122.x. Epub 2008 Mar 26.

PMID:
18371186
50.

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