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Items: 39

1.

Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi.

Batty EM, Chaemchuen S, Blacksell S, Richards AL, Paris D, Bowden R, Chan C, Lachumanan R, Day N, Donnelly P, Chen S, Salje J.

PLoS Negl Trop Dis. 2018 Jun 6;12(6):e0006566. doi: 10.1371/journal.pntd.0006566. eCollection 2018 Jun.

2.

Insights into Platypus Population Structure and History from Whole-Genome Sequencing.

Martin HC, Batty EM, Hussin J, Westall P, Daish T, Kolomyjec S, Piazza P, Bowden R, Hawkins M, Grant T, Moritz C, Grutzner F, Gongora J, Donnelly P.

Mol Biol Evol. 2018 May 1;35(5):1238-1252. doi: 10.1093/molbev/msy041.

3.

Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae).

Schuster TM, Setaro SD, Tibbits JFG, Batty EL, Fowler RM, McLay TGB, Wilcox S, Ades PK, Bayly MJ.

PLoS One. 2018 Apr 18;13(4):e0195034. doi: 10.1371/journal.pone.0195034. eCollection 2018.

4.

Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131.

Stoesser N, Sheppard AE, Pankhurst L, De Maio N, Moore CE, Sebra R, Turner P, Anson LW, Kasarskis A, Batty EM, Kos V, Wilson DJ, Phetsouvanh R, Wyllie D, Sokurenko E, Manges AR, Johnson TJ, Price LB, Peto TE, Johnson JR, Didelot X, Walker AS, Crook DW; Modernizing Medical Microbiology Informatics Group (MMMIG).

MBio. 2016 Mar 22;7(2):e02162. doi: 10.1128/mBio.02162-15.

5.

MinION Analysis and Reference Consortium: Phase 1 data release and analysis.

Ip CLC, Loose M, Tyson JR, de Cesare M, Brown BL, Jain M, Leggett RM, Eccles DA, Zalunin V, Urban JM, Piazza P, Bowden RJ, Paten B, Mwaigwisya S, Batty EM, Simpson JT, Snutch TP, Birney E, Buck D, Goodwin S, Jansen HJ, O'Grady J, Olsen HE; MinION Analysis and Reference Consortium.

F1000Res. 2015 Oct 15;4:1075. doi: 10.12688/f1000research.7201.1. eCollection 2015.

6.

New quantitative approaches reveal the spatial preference of nuclear compartments in mammalian fibroblasts.

Weston DJ, Russell RA, Batty E, Jensen K, Stephens DA, Adams NM, Freemont PS.

J R Soc Interface. 2015 Mar 6;12(104):20140894. doi: 10.1098/rsif.2014.0894.

7.

Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community- versus hospital-associated transmission in an endemic setting.

Stoesser N, Giess A, Batty EM, Sheppard AE, Walker AS, Wilson DJ, Didelot X, Bashir A, Sebra R, Kasarskis A, Sthapit B, Shakya M, Kelly D, Pollard AJ, Peto TE, Crook DW, Donnelly P, Thorson S, Amatya P, Joshi S.

Antimicrob Agents Chemother. 2014 Dec;58(12):7347-57. doi: 10.1128/AAC.03900-14. Epub 2014 Sep 29.

8.

Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.

Everitt RG, Didelot X, Batty EM, Miller RR, Knox K, Young BC, Bowden R, Auton A, Votintseva A, Larner-Svensson H, Charlesworth J, Golubchik T, Ip CL, Godwin H, Fung R, Peto TE, Walker AS, Crook DW, Wilson DJ.

Nat Commun. 2014 May 23;5:3956. doi: 10.1038/ncomms4956.

9.

Healthcare-associated outbreak of meticillin-resistant Staphylococcus aureus bacteraemia: role of a cryptic variant of an epidemic clone.

Miller RM, Price JR, Batty EM, Didelot X, Wyllie D, Golubchik T, Crook DW, Paul J, Peto TE, Wilson DJ, Cule M, Ip CL, Day NP, Moore CE, Bowden R, Llewelyn MJ.

J Hosp Infect. 2014 Feb;86(2):83-9. doi: 10.1016/j.jhin.2013.11.007. Epub 2013 Dec 21.

10.

Improved workflows for high throughput library preparation using the transposome-based Nextera system.

Lamble S, Batty E, Attar M, Buck D, Bowden R, Lunter G, Crook D, El-Fahmawi B, Piazza P.

BMC Biotechnol. 2013 Nov 20;13:104. doi: 10.1186/1472-6750-13-104.

11.

Diverse sources of C. difficile infection identified on whole-genome sequencing.

Eyre DW, Cule ML, Wilson DJ, Griffiths D, Vaughan A, O'Connor L, Ip CLC, Golubchik T, Batty EM, Finney JM, Wyllie DH, Didelot X, Piazza P, Bowden R, Dingle KE, Harding RM, Crook DW, Wilcox MH, Peto TEA, Walker AS.

N Engl J Med. 2013 Sep 26;369(13):1195-205. doi: 10.1056/NEJMoa1216064.

12.

A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples.

Batty EM, Wong TH, Trebes A, Argoud K, Attar M, Buck D, Ip CL, Golubchik T, Cule M, Bowden R, Manganis C, Klenerman P, Barnes E, Walker AS, Wyllie DH, Wilson DJ, Dingle KE, Peto TE, Crook DW, Piazza P.

PLoS One. 2013 Jun 10;8(6):e66129. doi: 10.1371/journal.pone.0066129. Print 2013.

13.

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data.

Stoesser N, Batty EM, Eyre DW, Morgan M, Wyllie DH, Del Ojo Elias C, Johnson JR, Walker AS, Peto TE, Crook DW.

J Antimicrob Chemother. 2013 Oct;68(10):2234-44. doi: 10.1093/jac/dkt180. Epub 2013 May 30.

14.

Within-host evolution of Staphylococcus aureus during asymptomatic carriage.

Golubchik T, Batty EM, Miller RR, Farr H, Young BC, Larner-Svensson H, Fung R, Godwin H, Knox K, Votintseva A, Everitt RG, Street T, Cule M, Ip CL, Didelot X, Peto TE, Harding RM, Wilson DJ, Crook DW, Bowden R.

PLoS One. 2013 May 1;8(5):e61319. doi: 10.1371/journal.pone.0061319. Print 2013.

15.

Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes.

Schulte I, Batty EM, Pole JC, Blood KA, Mo S, Cooke SL, Ng C, Howe KL, Chin SF, Brenton JD, Caldas C, Howarth KD, Edwards PA.

BMC Genomics. 2012 Dec 22;13:719. doi: 10.1186/1471-2164-13-719.

16.

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission.

Didelot X, Eyre DW, Cule M, Ip CL, Ansari MA, Griffiths D, Vaughan A, O'Connor L, Golubchik T, Batty EM, Piazza P, Wilson DJ, Bowden R, Donnelly PJ, Dingle KE, Wilcox M, Walker AS, Crook DW, Peto TE, Harding RM.

Genome Biol. 2012 Dec 21;13(12):R118. doi: 10.1186/gb-2012-13-12-r118.

17.

Recombinational switching of the Clostridium difficile S-layer and a novel glycosylation gene cluster revealed by large-scale whole-genome sequencing.

Dingle KE, Didelot X, Ansari MA, Eyre DW, Vaughan A, Griffiths D, Ip CL, Batty EM, Golubchik T, Bowden R, Jolley KA, Hood DW, Fawley WN, Walker AS, Peto TE, Wilcox MH, Crook DW.

J Infect Dis. 2013 Feb 15;207(4):675-86. doi: 10.1093/infdis/jis734. Epub 2012 Nov 29.

18.

A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance.

Eyre DW, Golubchik T, Gordon NC, Bowden R, Piazza P, Batty EM, Ip CL, Wilson DJ, Didelot X, O'Connor L, Lay R, Buck D, Kearns AM, Shaw A, Paul J, Wilcox MH, Donnelly PJ, Peto TE, Walker AS, Crook DW.

BMJ Open. 2012 Jun 6;2(3). pii: e001124. doi: 10.1136/bmjopen-2012-001124. Print 2012.

19.

Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease.

Young BC, Golubchik T, Batty EM, Fung R, Larner-Svensson H, Votintseva AA, Miller RR, Godwin H, Knox K, Everitt RG, Iqbal Z, Rimmer AJ, Cule M, Ip CL, Didelot X, Harding RM, Donnelly P, Peto TE, Crook DW, Bowden R, Wilson DJ.

Proc Natl Acad Sci U S A. 2012 Mar 20;109(12):4550-5. doi: 10.1073/pnas.1113219109. Epub 2012 Mar 5.

20.

PML nuclear bodies and other TRIM-defined subcellular compartments.

Batty EC, Jensen K, Freemont PS.

Adv Exp Med Biol. 2012;770:39-58. Review.

PMID:
23630999
21.

The role of tandem duplicator phenotype in tumour evolution in high-grade serous ovarian cancer.

Ng CK, Cooke SL, Howe K, Newman S, Xian J, Temple J, Batty EM, Pole JC, Langdon SP, Edwards PA, Brenton JD.

J Pathol. 2012 Apr;226(5):703-12. doi: 10.1002/path.3980. Epub 2012 Feb 9.

PMID:
22183581
22.

Development of a contact call in black-capped chickadees (Poecile atricapillus) hand-reared in different acoustic environments.

Guillette LM, Bloomfield LL, Batty ER, Dawson MR, Sturdy CB.

J Acoust Soc Am. 2011 Oct;130(4):2249-56. doi: 10.1121/1.3628343.

PMID:
21973380
23.

Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles.

Howarth KD, Pole JC, Beavis JC, Batty EM, Newman S, Bignell GR, Edwards PA.

Genome Res. 2011 Apr;21(4):525-34. doi: 10.1101/gr.114116.110. Epub 2011 Jan 20.

24.

Proximity to an edge affects search strategy in adults and children.

Batty ER, Spetch ML, Parent M.

Behav Processes. 2010 Oct;85(3):265-77. doi: 10.1016/j.beproc.2010.07.015. Epub 2010 Aug 11.

PMID:
20708662
25.

Black-capped (Poecile atricapillus) and mountain chickadee (Poecile gambeli) contact call contains species, sex, and individual identity features.

Guillette LM, Bloomfield LL, Batty ER, Dawson MR, Sturdy CB.

J Acoust Soc Am. 2010 Feb;127(2):1116-23. doi: 10.1121/1.3277247.

PMID:
20136232
26.

Rats' use of geometric, featural and orientation cues to locate a hidden goal.

Batty ER, Hoban L, Spetch ML, Dickson CT.

Behav Processes. 2009 Nov;82(3):327-34. doi: 10.1016/j.beproc.2009.08.002. Epub 2009 Aug 13.

PMID:
19683037
27.

Segmentation of fluorescence microscopy images for quantitative analysis of cell nuclear architecture.

Russell RA, Adams NM, Stephens DA, Batty E, Jensen K, Freemont PS.

Biophys J. 2009 Apr 22;96(8):3379-89. doi: 10.1016/j.bpj.2008.12.3956.

28.

Comparing black-capped (Poecile atricapillus) and mountain chickadees (Poecile gambeli): use of geometric and featural information in a spatial orientation task.

Batty ER, Bloomfield LL, Spetch ML, Sturdy CB.

Anim Cogn. 2009 Jul;12(4):633-41. doi: 10.1007/s10071-009-0222-3. Epub 2009 Apr 19.

PMID:
19381699
29.

PML nuclear bodies and their spatial relationships in the mammalian cell nucleus.

Batty E, Jensen K, Freemont P.

Front Biosci (Landmark Ed). 2009 Jan 1;14:1182-96. Review.

PMID:
19273124
30.

Pigeons' (Columba livia) hierarchical organization of local and global cues in touch screen tasks.

Legge EL, Spetch ML, Batty ER.

Behav Processes. 2009 Feb;80(2):128-39. doi: 10.1016/j.beproc.2008.10.011. Epub 2008 Oct 31.

PMID:
19022355
31.

A comparison of the efficacy and tolerability of single doses of HFA 134a albuterol and CFC albuterol in mild-to-moderate asthmatic patients.

Langley SJ, Sykes AP, Batty EP, Masterson CM, Woodcock A.

Ann Allergy Asthma Immunol. 2002 May;88(5):488-93.

PMID:
12027070
32.

Bronchodilator response to salbutamol after chronic dosing with salmeterol or placebo.

Langley SJ, Masterson CM, Batty EP, Woodcock A.

Eur Respir J. 1998 May;11(5):1081-5.

33.
34.

Caprine retrovirus infection in New South Wales: virus isolations, clinical and histopathological findings and prevalence of antibody.

Grewal AS, Greenwood PE, Burton RW, Smith JE, Batty EM, North R.

Aust Vet J. 1986 Aug;63(8):245-8.

PMID:
3024613
35.
36.
37.

Method for preparing bovine serum for use in cell culture media.

Batty EM, Gard GP.

Lab Pract. 1974 Aug;23(8):434-5. No abstract available.

PMID:
4853195
38.

Combination rack and roller system for cell culture growth.

Batty EM.

Lab Pract. 1974 Aug;23(8):435-6. No abstract available.

PMID:
4851086
39.

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