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Items: 31

1.

Expression and secretion of a lytic polysaccharide monooxygenase by a fast-growing cyanobacterium.

Russo DA, Zedler JAZ, Wittmann DN, Möllers B, Singh RK, Batth TS, van Oort B, Olsen JV, Bjerrum MJ, Jensen PE.

Biotechnol Biofuels. 2019 Apr 1;12:74. doi: 10.1186/s13068-019-1416-9. eCollection 2019.

2.

GIGYF1/2-Driven Cooperation between ZNF598 and TTP in Posttranscriptional Regulation of Inflammatory Signaling.

Tollenaere MAX, Tiedje C, Rasmussen S, Nielsen JC, Vind AC, Blasius M, Batth TS, Mailand N, Olsen JV, Gaestel M, Bekker-Jensen S.

Cell Rep. 2019 Mar 26;26(13):3511-3521.e4. doi: 10.1016/j.celrep.2019.03.006.

3.

Protein Aggregation Capture on Microparticles Enables Multipurpose Proteomics Sample Preparation.

Batth TS, Tollenaere MAX, Rüther P, Gonzalez-Franquesa A, Prabhakar BS, Bekker-Jensen S, Deshmukh AS, Olsen JV.

Mol Cell Proteomics. 2019 May;18(5):1027-1035. doi: 10.1074/mcp.TIR118.001270. Epub 2019 Mar 4.

4.

Proteogenomic Characterization of Patient-Derived Xenografts Highlights the Role of REST in Neuroendocrine Differentiation of Castration-Resistant Prostate Cancer.

Flores-Morales A, Bergmann TB, Lavallee C, Batth TS, Lin D, Lerdrup M, Friis S, Bartels A, Kristensen G, Krzyzanowska A, Xue H, Fazli L, Hansen KH, Røder MA, Brasso K, Moreira JM, Bjartell A, Wang Y, Olsen JV, Collins CC, Iglesias-Gato D.

Clin Cancer Res. 2019 Jan 15;25(2):595-608. doi: 10.1158/1078-0432.CCR-18-0729. Epub 2018 Oct 1.

PMID:
30274982
5.

Limits for Resolving Isobaric Tandem Mass Tag Reporter Ions Using Phase-Constrained Spectrum Deconvolution.

Kelstrup CD, Aizikov K, Batth TS, Kreutzman A, Grinfeld D, Lange O, Mourad D, Makarov AA, Olsen JV.

J Proteome Res. 2018 Nov 2;17(11):4008-4016. doi: 10.1021/acs.jproteome.8b00381. Epub 2018 Sep 28.

6.

Large-Scale Phosphoproteomics Reveals Shp-2 Phosphatase-Dependent Regulators of Pdgf Receptor Signaling.

Batth TS, Papetti M, Pfeiffer A, Tollenaere MAX, Francavilla C, Olsen JV.

Cell Rep. 2018 Mar 6;22(10):2784-2796. doi: 10.1016/j.celrep.2018.02.038.

7.

Proteomics Reveals Global Regulation of Protein SUMOylation by ATM and ATR Kinases during Replication Stress.

Munk S, Sigurðsson JO, Xiao Z, Batth TS, Franciosa G, von Stechow L, Lopez-Contreras AJ, Vertegaal ACO, Olsen JV.

Cell Rep. 2017 Oct 10;21(2):546-558. doi: 10.1016/j.celrep.2017.09.059.

8.

An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes.

Bekker-Jensen DB, Kelstrup CD, Batth TS, Larsen SC, Haldrup C, Bramsen JB, Sørensen KD, Høyer S, Ørntoft TF, Andersen CL, Nielsen ML, Olsen JV.

Cell Syst. 2017 Jun 28;4(6):587-599.e4. doi: 10.1016/j.cels.2017.05.009. Epub 2017 Jun 7.

9.

The ubiquitin ligase Cullin5SOCS2 regulates NDR1/STK38 stability and NF-κB transactivation.

Paul I, Batth TS, Iglesias-Gato D, Al-Araimi A, Al-Haddabi I, Alkharusi A, Norstedt G, Olsen JV, Zadjali F, Flores-Morales A.

Sci Rep. 2017 Feb 20;7:42800. doi: 10.1038/srep42800.

10.

Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow.

Brunk E, George KW, Alonso-Gutierrez J, Thompson M, Baidoo E, Wang G, Petzold CJ, McCloskey D, Monk J, Yang L, O'Brien EJ, Batth TS, Martin HG, Feist A, Adams PD, Keasling JD, Palsson BO, Lee TS.

Cell Syst. 2016 May 25;2(5):335-46. doi: 10.1016/j.cels.2016.04.004. Epub 2016 May 19.

11.

Offline High pH Reversed-Phase Peptide Fractionation for Deep Phosphoproteome Coverage.

Batth TS, Olsen JV.

Methods Mol Biol. 2016;1355:179-92. doi: 10.1007/978-1-4939-3049-4_12.

PMID:
26584926
12.

Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering.

Alonso-Gutierrez J, Kim EM, Batth TS, Cho N, Hu Q, Chan LJG, Petzold CJ, Hillson NJ, Adams PD, Keasling JD, Garcia Martin H, Lee TS.

Metab Eng. 2015 Mar;28:123-133. doi: 10.1016/j.ymben.2014.11.011. Epub 2014 Dec 29.

PMID:
25554074
13.

Rapid and deep proteomes by faster sequencing on a benchtop quadrupole ultra-high-field Orbitrap mass spectrometer.

Kelstrup CD, Jersie-Christensen RR, Batth TS, Arrey TN, Kuehn A, Kellmann M, Olsen JV.

J Proteome Res. 2014 Dec 5;13(12):6187-95. doi: 10.1021/pr500985w. Epub 2014 Nov 10.

PMID:
25349961
14.

Off-line high-pH reversed-phase fractionation for in-depth phosphoproteomics.

Batth TS, Francavilla C, Olsen JV.

J Proteome Res. 2014 Dec 5;13(12):6176-86. doi: 10.1021/pr500893m. Epub 2014 Nov 4.

PMID:
25338131
15.

A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins.

Batth TS, Singh P, Ramakrishnan VR, Sousa MML, Chan LJG, Tran HM, Luning EG, Pan EHY, Vuu KM, Keasling JD, Adams PD, Petzold CJ.

Metab Eng. 2014 Nov;26:48-56. doi: 10.1016/j.ymben.2014.08.004. Epub 2014 Sep 7.

PMID:
25205128
16.

Development of a native Escherichia coli induction system for ionic liquid tolerance.

Frederix M, Hütter K, Leu J, Batth TS, Turner WJ, Rüegg TL, Blanch HW, Simmons BA, Adams PD, Keasling JD, Thelen MP, Dunlop MJ, Petzold CJ, Mukhopadhyay A.

PLoS One. 2014 Jul 1;9(7):e101115. doi: 10.1371/journal.pone.0101115. eCollection 2014.

17.

Correlation analysis of targeted proteins and metabolites to assess and engineer microbial isopentenol production.

George KW, Chen A, Jain A, Batth TS, Baidoo EE, Wang G, Adams PD, Petzold CJ, Keasling JD, Lee TS.

Biotechnol Bioeng. 2014 Aug;111(8):1648-58. doi: 10.1002/bit.25226. Epub 2014 May 1.

PMID:
24615242
18.

Metabolic pathway optimization using ribosome binding site variants and combinatorial gene assembly.

Nowroozi FF, Baidoo EE, Ermakov S, Redding-Johanson AM, Batth TS, Petzold CJ, Keasling JD.

Appl Microbiol Biotechnol. 2014 Feb;98(4):1567-81. doi: 10.1007/s00253-013-5361-4. Epub 2013 Nov 21.

PMID:
24257840
19.

Engineering dynamic pathway regulation using stress-response promoters.

Dahl RH, Zhang F, Alonso-Gutierrez J, Baidoo E, Batth TS, Redding-Johanson AM, Petzold CJ, Mukhopadhyay A, Lee TS, Adams PD, Keasling JD.

Nat Biotechnol. 2013 Nov;31(11):1039-46. doi: 10.1038/nbt.2689. Epub 2013 Oct 20.

PMID:
24142050
20.

Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production.

Alonso-Gutierrez J, Chan R, Batth TS, Adams PD, Keasling JD, Petzold CJ, Lee TS.

Metab Eng. 2013 Sep;19:33-41. doi: 10.1016/j.ymben.2013.05.004. Epub 2013 May 29.

PMID:
23727191
21.

Targeted proteomics for metabolic pathway optimization.

Batth TS, Keasling JD, Petzold CJ.

Methods Mol Biol. 2012;944:237-49. doi: 10.1007/978-1-62703-122-6_17.

PMID:
23065621
22.

Enhancing fatty acid production by the expression of the regulatory transcription factor FadR.

Zhang F, Ouellet M, Batth TS, Adams PD, Petzold CJ, Mukhopadhyay A, Keasling JD.

Metab Eng. 2012 Nov;14(6):653-60. doi: 10.1016/j.ymben.2012.08.009. Epub 2012 Sep 28.

PMID:
23026122
23.

Application of targeted proteomics to metabolically engineered Escherichia coli.

Singh P, Batth TS, Juminaga D, Dahl RH, Keasling JD, Adams PD, Petzold CJ.

Proteomics. 2012 Apr;12(8):1289-99. doi: 10.1002/pmic.201100482.

PMID:
22577029
24.

Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis.

Parsons HT, Christiansen K, Knierim B, Carroll A, Ito J, Batth TS, Smith-Moritz AM, Morrison S, McInerney P, Hadi MZ, Auer M, Mukhopadhyay A, Petzold CJ, Scheller HV, Loqué D, Heazlewood JL.

Plant Physiol. 2012 May;159(1):12-26. doi: 10.1104/pp.111.193151. Epub 2012 Mar 19.

25.

Supplementation of intracellular XylR leads to coutilization of hemicellulose sugars.

Groff D, Benke PI, Batth TS, Bokinsky G, Petzold CJ, Adams PD, Keasling JD.

Appl Environ Microbiol. 2012 Apr;78(7):2221-9. doi: 10.1128/AEM.06761-11. Epub 2012 Jan 27.

26.

Modular engineering of L-tyrosine production in Escherichia coli.

Juminaga D, Baidoo EE, Redding-Johanson AM, Batth TS, Burd H, Mukhopadhyay A, Petzold CJ, Keasling JD.

Appl Environ Microbiol. 2012 Jan;78(1):89-98. doi: 10.1128/AEM.06017-11. Epub 2011 Oct 21.

27.

Optimization of a heterologous mevalonate pathway through the use of variant HMG-CoA reductases.

Ma SM, Garcia DE, Redding-Johanson AM, Friedland GD, Chan R, Batth TS, Haliburton JR, Chivian D, Keasling JD, Petzold CJ, Lee TS, Chhabra SR.

Metab Eng. 2011 Sep;13(5):588-97. doi: 10.1016/j.ymben.2011.07.001. Epub 2011 Jul 28.

PMID:
21810477
28.

Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough.

Chhabra SR, Joachimiak MP, Petzold CJ, Zane GM, Price MN, Reveco SA, Fok V, Johanson AR, Batth TS, Singer M, Chandonia JM, Joyner D, Hazen TC, Arkin AP, Wall JD, Singh AK, Keasling JD.

PLoS One. 2011;6(6):e21470. doi: 10.1371/journal.pone.0021470. Epub 2011 Jun 28.

29.

Targeted proteomics for metabolic pathway optimization: application to terpene production.

Redding-Johanson AM, Batth TS, Chan R, Krupa R, Szmidt HL, Adams PD, Keasling JD, Lee TS, Mukhopadhyay A, Petzold CJ.

Metab Eng. 2011 Mar;13(2):194-203. doi: 10.1016/j.ymben.2010.12.005. Epub 2011 Jan 5.

PMID:
21215324
30.

Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism.

Ito J, Batth TS, Petzold CJ, Redding-Johanson AM, Mukhopadhyay A, Verboom R, Meyer EH, Millar AH, Heazlewood JL.

J Proteome Res. 2011 Apr 1;10(4):1571-82. doi: 10.1021/pr1009433. Epub 2011 Feb 28.

PMID:
21166475
31.

4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement.

Cong Y, Baker ML, Jakana J, Woolford D, Miller EJ, Reissmann S, Kumar RN, Redding-Johanson AM, Batth TS, Mukhopadhyay A, Ludtke SJ, Frydman J, Chiu W.

Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):4967-72. doi: 10.1073/pnas.0913774107. Epub 2010 Mar 1.

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