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Tuberculosis treatment in the private healthcare sector in India: an analysis of recent trends and volumes using drug sales data.

Arinaminpathy N, Batra D, Maheshwari N, Swaroop K, Sharma L, Sachdeva KS, Khaparde S, Rao R, Gupta D, Vadera B, Nair SA, Rade K, Kumta S, Dewan P.

BMC Infect Dis. 2019 Jun 19;19(1):539. doi: 10.1186/s12879-019-4169-y.


Draft Genome Sequences of Leishmania (Leishmania) amazonensis, Leishmania (Leishmania) mexicana, and Leishmania (Leishmania) aethiopica, Potential Etiological Agents of Diffuse Cutaneous Leishmaniasis.

Batra D, Lin W, Narayanan V, Rowe LA, Sheth M, Zheng Y, Loparev V, de Almeida M.

Microbiol Resour Announc. 2019 May 16;8(20). pii: e00269-19. doi: 10.1128/MRA.00269-19.


Vitamin D modulates human macrophage response to Mycobacterium tuberculosis DNA.

Cervantes JL, Oak E, Garcia J, Liu H, Lorenzini PA, Batra D, Chhabra A, Salazar JC, Roca X.

Tuberculosis (Edinb). 2019 May;116S:S131-S137. doi: 10.1016/ Epub 2019 May 3.


Impact of a protocol-driven unified service for neonates with bronchopulmonary dysplasia.

Batey N, Batra D, Dorling J, Bhatt JM.

ERJ Open Res. 2019 Mar 25;5(1). pii: 00183-2018. doi: 10.1183/23120541.00183-2018. eCollection 2019 Feb.


PacBio Genome Sequences of Eight Escherichia albertii Strains Isolated from Humans in the United States.

Lindsey RL, Rowe LA, Batra D, Smith P, Strockbine NA.

Microbiol Resour Announc. 2019 Feb 28;8(9). pii: e01663-18. doi: 10.1128/MRA.01663-18. eCollection 2019 Feb.


First Draft Genome Sequence of Leishmania (Viannia) lainsoni Strain 216-34, Isolated from a Peruvian Clinical Case.

Lin W, Batra D, Narayanan V, Rowe LA, Sheth M, Zheng Y, Juieng P, Loparev V, de Almeida M.

Microbiol Resour Announc. 2019 Feb 7;8(6). pii: e01524-18. doi: 10.1128/MRA.01524-18. eCollection 2019 Feb.


Conjugal Transfer, Whole-Genome Sequencing, and Plasmid Analysis of Four mcr-1-Bearing Isolates from U.S. Patients.

Zhu W, Lawsin A, Lindsey RL, Batra D, Knipe K, Yoo BB, Perry KA, Rowe LA, Lonsway D, Walters MS, Rasheed JK, Halpin AL.

Antimicrob Agents Chemother. 2019 Mar 27;63(4). pii: e02417-18. doi: 10.1128/AAC.02417-18. Print 2019 Apr.


Complete Genome Sequence of Nocardia farcinica W6977T Obtained by Combining Illumina and PacBio Reads.

Gulvik CA, Arthur RA, Humrighouse BW, Batra D, Rowe LA, Lasker BA, McQuiston JR.

Microbiol Resour Announc. 2019 Jan 17;8(3). pii: e01373-18. doi: 10.1128/MRA.01373-18. eCollection 2019 Jan.


Draft Genome Sequence of French Guiana Leishmania (Viannia) guyanensis Strain 204-365, Assembled Using Long Reads.

Batra D, Lin W, Rowe LA, Sheth M, Zheng Y, Loparev V, de Almeida M.

Microbiol Resour Announc. 2018 Dec 13;7(23). pii: e01421-18. doi: 10.1128/MRA.01421-18. eCollection 2018 Dec.


Complete Genome Sequence of Streptacidiphilus sp. Strain 15-057A, Obtained from Bronchial Lavage Fluid.

Arthur RA, Gulvik CA, Humrighouse BW, Lasker BA, Batra D, Rowe LA, Igual JM, Nouioui I, Klenk HP, McQuiston JR.

Microbiol Resour Announc. 2018 Nov 15;7(19). pii: e01127-18. doi: 10.1128/MRA.01127-18. eCollection 2018 Nov.


PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli, and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene.

Lindsey RL, Batra D, Smith P, Patel PN, Tagg KA, Garcia-Toledo L, Loparev VN, Juieng P, Sheth M, Joung YJ, Rowe LA.

Microbiol Resour Announc. 2018;7(14). pii: e01025-18. doi: 10.1128/MRA.01025-18. Epub 2018 Oct 11.


An unusual manifestation of Pisa syndrome in progressive supranuclear palsy.

Verma R, Batra D.

Neurol India. 2018 Sep-Oct;66(5):1491-1493. doi: 10.4103/0028-3886.241350. No abstract available.


Visual Dialog.

Das A, Kottur S, Gupta K, Singh A, Yadav D, Lee S, Moura J, Parikh D, Batra D.

IEEE Trans Pattern Anal Mach Intell. 2018 Apr 19. doi: 10.1109/TPAMI.2018.2828437. [Epub ahead of print]


High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing.

Patel PN, Lindsey RL, Garcia-Toledo L, Rowe LA, Batra D, Whitley SW, Drapeau D, Stoneburg D, Martin H, Juieng P, Loparev VN, Strockbine N.

Genome Announc. 2018 May 10;6(19). pii: e00391-18. doi: 10.1128/genomeA.00391-18.


High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.

Kim J, Lindsey RL, Garcia-Toledo L, Loparev VN, Rowe LA, Batra D, Juieng P, Stoneburg D, Martin H, Knipe K, Smith P, Strockbine N.

Genome Announc. 2018 Apr 12;6(15). pii: e00282-18. doi: 10.1128/genomeA.00282-18.


Genome Sequence of a Multidrug-Resistant Candida haemulonii Isolate from a Patient with Chronic Leg Ulcers in Israel.

Chow NA, Gade L, Batra D, Rowe LA, Juieng P, Ben-Ami R, Loparev VN, Litvintseva AP.

Genome Announc. 2018 Apr 12;6(15). pii: e00176-18. doi: 10.1128/genomeA.00176-18.


Genome Sequence of the Amphotericin B-Resistant Candida duobushaemulonii Strain B09383.

Chow NA, Gade L, Batra D, Rowe LA, Juieng P, Loparev VN, Litvintseva AP.

Genome Announc. 2018 Mar 29;6(13). pii: e00204-18. doi: 10.1128/genomeA.00204-18.


Phenotypic and Genotypic Characterization of Enterobacteriaceae Producing Oxacillinase-48-Like Carbapenemases, United States.

Lutgring JD, Zhu W, de Man TJB, Avillan JJ, Anderson KF, Lonsway DR, Rowe LA, Batra D, Rasheed JK, Limbago BM.

Emerg Infect Dis. 2018 Apr;24(4):700-709. doi: 10.3201/eid2404.171377. Erratum in: Emerg Infect Dis. 2018 Sep;24(9):1773.


High-Quality Whole-Genome Sequences for 21 Enterotoxigenic Escherichia coli Strains Generated with PacBio Sequencing.

Smith P, Lindsey RL, Rowe LA, Batra D, Stripling D, Garcia-Toledo L, Drapeau D, Knipe K, Strockbine N.

Genome Announc. 2018 Jan 11;6(2). pii: e01311-17. doi: 10.1128/genomeA.01311-17.


High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping.

Schroeder MR, Juieng P, Batra D, Knipe K, Rowe LA, Sheth M, Smith P, Garcia-Toledo L, Loparev VN, Lindsey RL.

Genome Announc. 2018 Jan 4;6(1). pii: e01384-17. doi: 10.1128/genomeA.01384-17.


Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis.

Pei D, Nicholson AC, Jiang J, Chen H, Whitney AM, Villarma A, Bell M, Humrighouse B, Rowe LA, Sheth M, Batra D, Juieng P, Loparev VN, McQuiston JR, Lan Y, Ma Y, Xu J.

Genome Announc. 2017 Nov 22;5(47). pii: e01359-17. doi: 10.1128/genomeA.01359-17.


High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps.

Lindsey RL, Batra D, Rowe L, N Loparev V, Juieng P, Garcia-Toledo L, Bicknese A, Stripling D, Martin H, Chen J, Strockbine N, Trees E.

Genome Announc. 2017 Aug 31;5(35). pii: e00906-17. doi: 10.1128/genomeA.00906-17.


Complete Genome Sequence of Mycobacteriumchimaera Strain CDC2015-22-71.

Hasan NA, Lawsin A, Perry KA, Alyanak E, Toney NC, Malecha A, Rowe LA, Batra D, Moulton-Meissner H, Miller JR, Strong M, Laufer Halpin A.

Genome Announc. 2017 Aug 3;5(31). pii: e00693-17. doi: 10.1128/genomeA.00693-17.


Two novel poxviruses with unusual genome rearrangements: NY_014 and Murmansk.

Smithson C, Meyer H, Gigante CM, Gao J, Zhao H, Batra D, Damon I, Upton C, Li Y.

Virus Genes. 2017 Dec;53(6):883-897. doi: 10.1007/s11262-017-1501-8. Epub 2017 Jul 31.


Phylogeography of Burkholderia pseudomallei Isolates, Western Hemisphere.

Gee JE, Gulvik CA, Elrod MG, Batra D, Rowe LA, Sheth M, Hoffmaster AR.

Emerg Infect Dis. 2017 Jul;23(7):1133-1138. doi: 10.3201/eid2307.161978.


Clinical Profile of Hypertensive Emergencies in an Intensive Care Unit.

Dhadke SV, Dhadke VN, Batra DS.

J Assoc Physicians India. 2017 May;65(5):18-22.


Cortical laminar necrosis in dengue encephalitis-a case report.

Garg RK, Rizvi I, Ingole R, Jain A, Malhotra HS, Kumar N, Batra D.

BMC Neurol. 2017 Apr 20;17(1):79. doi: 10.1186/s12883-017-0855-9.


High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States.

Lindsey RL, Batra D, Rowe L, Loparev VN, Stripling D, Garcia-Toledo L, Knipe K, Juieng P, Sheth M, Martin H, Laufer Halpin A.

Genome Announc. 2017 Mar 16;5(11). pii: e01725-16. doi: 10.1128/genomeA.01725-16.


First Full Draft Genome Sequence of Plasmodium brasilianum.

Talundzic E, Ravishankar S, Nayak V, Patel DS, Olsen C, Sheth M, Batra D, Loparev V, Vannberg FO, Udhayakumar V, Barnwell JW.

Genome Announc. 2017 Feb 9;5(6). pii: e01566-16. doi: 10.1128/genomeA.01566-16.


The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement.

Weigand MR, Peng Y, Loparev V, Batra D, Bowden KE, Burroughs M, Cassiday PK, Davis JK, Johnson T, Juieng P, Knipe K, Mathis MH, Pruitt AM, Rowe L, Sheth M, Tondella ML, Williams MM.

J Bacteriol. 2017 Mar 28;199(8). pii: e00806-16. doi: 10.1128/JB.00806-16. Print 2017 Apr 15.


Toward a Complete North American Borrelia miyamotoi Genome.

Kingry LC, Replogle A, Batra D, Rowe LA, Sexton C, Dolan M, Connally N, Petersen JM, Schriefer ME.

Genome Announc. 2017 Feb 2;5(5). pii: e01557-16. doi: 10.1128/genomeA.01557-16.


Human Dendritic Cell-Derived Induced Pluripotent Stem Cell Lines Are Not Immunogenic.

Chhabra A, Chen IP, Batra D.

J Immunol. 2017 Mar 1;198(5):1875-1886. doi: 10.4049/jimmunol.1601676. Epub 2017 Jan 23.


Whole Genome Sequence and Comparative Genomics of the Novel Lyme Borreliosis Causing Pathogen, Borrelia mayonii.

Kingry LC, Batra D, Replogle A, Rowe LA, Pritt BS, Petersen JM.

PLoS One. 2016 Dec 28;11(12):e0168994. doi: 10.1371/journal.pone.0168994. eCollection 2016.


Universal Human Papillomavirus Typing Assay: Whole-Genome Sequencing following Target Enrichment.

Li T, Unger ER, Batra D, Sheth M, Steinau M, Jasinski J, Jones J, Rajeevan MS.

J Clin Microbiol. 2017 Mar;55(3):811-823. doi: 10.1128/JCM.02132-16. Epub 2016 Dec 14.


Activation induced cell death (AICD) of human melanoma antigen-specific TCR engineered CD8 T cells involves JNK, Bim and p53.

Chhabra A, Mukherji B, Batra D.

Expert Opin Ther Targets. 2017 Feb;21(2):117-129. doi: 10.1080/14728222.2017.1270941. Epub 2016 Dec 20.


The Establishment and Diversification of Epidemic-Associated Serogroup W Meningococcus in the African Meningitis Belt, 1994 to 2012.

Retchless AC, Hu F, Ouédraogo AS, Diarra S, Knipe K, Sheth M, Rowe LA, Sangaré L, Ky Ba A, Ouangraoua S, Batra D, Novak RT, Ouédraogo Traoré R, Wang X.

mSphere. 2016 Nov 16;1(6). pii: e00201-16. eCollection 2016 Nov-Dec.


Complete Genome Sequences of Four Different Bordetella sp. Isolates Causing Human Respiratory Infections.

Weigand MR, Peng Y, Loparev V, Batra D, Bowden KE, Cassiday PK, Davis JK, Johnson T, Juieng P, Miner CE, Rowe L, Sheth M, Tondella ML, Williams MM.

Genome Announc. 2016 Oct 6;4(5). pii: e01080-16. doi: 10.1128/genomeA.01080-16.


The number of privately treated tuberculosis cases in India: an estimation from drug sales data.

Arinaminpathy N, Batra D, Khaparde S, Vualnam T, Maheshwari N, Sharma L, Nair SA, Dewan P.

Lancet Infect Dis. 2016 Nov;16(11):1255-1260. doi: 10.1016/S1473-3099(16)30259-6. Epub 2016 Aug 25.


Complete Genome Sequences of Bordetella pertussis Vaccine Reference Strains 134 and 10536.

Weigand MR, Peng Y, Loparev V, Batra D, Burroughs M, Johnson T, Juieng P, Rowe L, Tondella ML, Williams MM.

Genome Announc. 2016 Sep 15;4(5). pii: e00979-16. doi: 10.1128/genomeA.00979-16.


The genomes of three North American orthopoxviruses.

Smithson C, Tang N, Sammons S, Frace M, Batra D, Li Y, Emerson GL, Carroll DS, Upton C.

Virus Genes. 2017 Feb;53(1):21-34. doi: 10.1007/s11262-016-1388-9. Epub 2016 Sep 9.


Chromosome and Linear Plasmid Sequences of a 2015 Human Isolate of the Tick-Borne Relapsing Fever Spirochete, Borrelia turicatae.

Kingry LC, Batra D, Replogle A, Sexton C, Rowe L, Stermole BM, Christensen AM, Schriefer ME.

Genome Announc. 2016 Jul 14;4(4). pii: e00655-16. doi: 10.1128/genomeA.00655-16.


Complete Genome Sequences of 11 Haemophilus ducreyi Isolates from Children with Cutaneous Lesions in Vanuatu and Ghana.

Pillay A, Katz SS, Abrams AJ, Ballard RC, Simpson SV, Taleo F, Lahra MM, Batra D, Rowe L, Trees DL, Asiedu K, Chen CY.

Genome Announc. 2016 Jul 7;4(4). pii: e00459-16. doi: 10.1128/genomeA.00459-16.


High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.

Lindsey RL, Rowe L, Garcia-Toledo L, Loparev V, Knipe K, Stripling D, Martin H, Trees E, Juieng P, Batra D, Strockbine N.

Genome Announc. 2016 Jun 30;4(3). pii: e00626-16. doi: 10.1128/genomeA.00626-16.


Genome Sequence of Vaccinia virus Strain Lister-Butantan, a Lister Vaccine Variant Used during a Smallpox Eradication Campaign in Brazil.

Assis F, Trindade G, Drumond B, Frace M, Sammons S, Emerson G, Li Y, Carroll D, Batra D, Abrahão J, Kroon E.

Genome Announc. 2016 Jun 23;4(3). pii: e00536-16. doi: 10.1128/genomeA.00536-16.


Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak.

Nicholson AC, Whitney AM, Emery BD, Bell ME, Gartin JT, Humrighouse BW, Loparev VN, Batra D, Sheth M, Rowe LA, Juieng P, Knipe K, Gulvik C, McQuiston JR.

Genome Announc. 2016 Jun 16;4(3). pii: e00563-16. doi: 10.1128/genomeA.00563-16.


Empirical Minimum Bayes Risk Prediction.

Premachandran V, Tarlow D, Yuille AL, Batra D.

IEEE Trans Pattern Anal Mach Intell. 2017 Jan;39(1):75-86. Epub 2016 Mar 3.


Correction for Weigand et al., Complete Genome Sequences of Two Bordetella hinzii Strains Isolated from Humans.

Weigand MR, Changayil S, Kulasekarapandian Y, Batra D, Loparev V, Juieng P, Rowe L, Sheth M, Davis JK, Tondella ML.

Genome Announc. 2016 Jan 14;4(1). pii: e01639-15. doi: 10.1128/genomeA.01639-15. No abstract available.


Guest Editors' Introduction: Special Section on Higher Order Graphical Models in Computer Vision.

Alahari K, Batra D, Ramalingam S, Paragios N, Zemel R.

IEEE Trans Pattern Anal Mach Intell. 2015 Jul;37(7):1321-2. No abstract available.


Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos.

Aghamirzaie D, Batra D, Heath LS, Schneider A, Grene R, Collakova E.

BMC Genomics. 2015 Nov 14;16:928. doi: 10.1186/s12864-015-2108-x.


The incidence and presentation of neonatal herpes in a single UK tertiary centre, 2006-2013.

Batra D, Davies P, Manktelow BN, Smith C.

Arch Dis Child. 2014 Oct;99(10):916-21. doi: 10.1136/archdischild-2013-305335. Epub 2014 Jun 11.


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