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Comparison of the Full Distribution of Fitness Effects of New Amino Acid Mutations Across Great Apes.

Castellano D, Macià MC, Tataru P, Bataillon T, Munch K.

Genetics. 2019 Sep 5. pii: genetics.302494.2019. doi: 10.1534/genetics.119.302494. [Epub ahead of print]


polyDFEv2.0: testing for invariance of the distribution of fitness effects within and across species.

Tataru P, Bataillon T.

Bioinformatics. 2019 Aug 15;35(16):2868-2869. doi: 10.1093/bioinformatics/bty1060.


Identifying Drivers of Parallel Evolution: A Regression Model Approach.

Bailey SF, Guo Q, Bataillon T.

Genome Biol Evol. 2018 Oct 1;10(10):2801-2812. doi: 10.1093/gbe/evy210.


The fitness landscape of the codon space across environments.

Fragata I, Matuszewski S, Schmitz MA, Bataillon T, Jensen JD, Bank C.

Heredity (Edinb). 2018 Nov;121(5):422-437. doi: 10.1038/s41437-018-0125-7. Epub 2018 Aug 20.


Overestimation of the adaptive substitution rate in fluctuating populations.

Rousselle M, Mollion M, Nabholz B, Bataillon T, Galtier N.

Biol Lett. 2018 May;14(5). pii: 20180055. doi: 10.1098/rsbl.2018.0055.


Patterns of Genome-Wide Nucleotide Diversity in the Gynodioecious Plant Thymus vulgaris Are Compatible with Recent Sweeps of Cytoplasmic Genes.

Mollion M, Ehlers BK, Figuet E, Santoni S, Lenormand T, Maurice S, Galtier N, Bataillon T.

Genome Biol Evol. 2018 Jan 1;10(1):239-248. doi: 10.1093/gbe/evx272.


Inference of Distribution of Fitness Effects and Proportion of Adaptive Substitutions from Polymorphism Data.

Tataru P, Mollion M, Glémin S, Bataillon T.

Genetics. 2017 Nov;207(3):1103-1119. doi: 10.1534/genetics.117.300323. Epub 2017 Sep 25.


The Evolutionary Interplay between Adaptation and Self-Fertilization.

Hartfield M, Bataillon T, Glémin S.

Trends Genet. 2017 Jun;33(6):420-431. doi: 10.1016/j.tig.2017.04.002. Epub 2017 May 8. Review.


Microbial community assembly and evolution in subseafloor sediment.

Starnawski P, Bataillon T, Ettema TJ, Jochum LM, Schreiber L, Chen X, Lever MA, Polz MF, Jørgensen BB, Schramm A, Kjeldsen KU.

Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):2940-2945. doi: 10.1073/pnas.1614190114. Epub 2017 Feb 27.


Statistical Inference in the Wright-Fisher Model Using Allele Frequency Data.

Tataru P, Simonsen M, Bataillon T, Hobolth A.

Syst Biol. 2017 Jan 1;66(1):e30-e46. doi: 10.1093/sysbio/syw056. Review.


What drives parallel evolution?: How population size and mutational variation contribute to repeated evolution.

Bailey SF, Blanquart F, Bataillon T, Kassen R.

Bioessays. 2017 Jan;39(1):1-9. doi: 10.1002/bies.201600176. Epub 2016 Nov 15.


One size fits all? Direct evidence for the heterogeneity of genetic drift throughout the genome.

Jiménez-Mena B, Tataru P, Brøndum RF, Sahana G, Guldbrandtsen B, Bataillon T.

Biol Lett. 2016 Jul;12(7). pii: 20160426. doi: 10.1098/rsbl.2016.0426.


A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate.

Bataillon T, Galtier N, Bernard A, Cryer N, Faivre N, Santoni S, Severac D, Mikkelsen TN, Larsen KS, Beier C, Sørensen JG, Holmstrup M, Ehlers BK.

Glob Chang Biol. 2016 Jul;22(7):2370-9. doi: 10.1111/gcb.13293. Epub 2016 Apr 24.


Epistasis and the Structure of Fitness Landscapes: Are Experimental Fitness Landscapes Compatible with Fisher's Geometric Model?

Blanquart F, Bataillon T.

Genetics. 2016 Jun;203(2):847-62. doi: 10.1534/genetics.115.182691. Epub 2016 Apr 6.


Can the experimental evolution programme help us elucidate the genetic basis of adaptation in nature?

Bailey SF, Bataillon T.

Mol Ecol. 2016 Jan;25(1):203-18. doi: 10.1111/mec.13378. Epub 2015 Oct 14. Review.


Inference Under a Wright-Fisher Model Using an Accurate Beta Approximation.

Tataru P, Bataillon T, Hobolth A.

Genetics. 2015 Nov;201(3):1133-41. doi: 10.1534/genetics.115.179606. Epub 2015 Aug 26.


Inference of purifying and positive selection in three subspecies of chimpanzees (Pan troglodytes) from exome sequencing.

Bataillon T, Duan J, Hvilsom C, Jin X, Li Y, Skov L, Glemin S, Munch K, Jiang T, Qian Y, Hobolth A, Wang J, Mailund T, Siegismund HR, Schierup MH.

Genome Biol Evol. 2015 Mar 30;7(4):1122-32. doi: 10.1093/gbe/evv058.


GC-Content evolution in bacterial genomes: the biased gene conversion hypothesis expands.

Lassalle F, Périan S, Bataillon T, Nesme X, Duret L, Daubin V.

PLoS Genet. 2015 Feb 6;11(2):e1004941. doi: 10.1371/journal.pgen.1004941. eCollection 2015 Feb.


Properties of selected mutations and genotypic landscapes under Fisher's geometric model.

Blanquart F, Achaz G, Bataillon T, Tenaillon O.

Evolution. 2014 Dec;68(12):3537-54. doi: 10.1111/evo.12545. Epub 2014 Nov 17.


Effects of new mutations on fitness: insights from models and data.

Bataillon T, Bailey SF.

Ann N Y Acad Sci. 2014 Jul;1320:76-92. doi: 10.1111/nyas.12460. Epub 2014 May 30. Review.


Rates of fitness decline and rebound suggest pervasive epistasis.

Perfeito L, Sousa A, Bataillon T, Gordo I.

Evolution. 2014 Jan;68(1):150-62. doi: 10.1111/evo.12234. Epub 2013 Sep 2.


Selection, genome-wide fitness effects and evolutionary rates in the model legume Medicago truncatula.

Paape T, Bataillon T, Zhou P, J Y Kono T, Briskine R, Young ND, Tiffin P.

Mol Ecol. 2013 Jul;22(13):3525-38. doi: 10.1111/mec.12329. Epub 2013 Jun 15.


As it happens: current directions in experimental evolution.

Bataillon T, Joyce P, Sniegowski P.

Biol Lett. 2013 Feb 23;9(1):20120945. doi: 10.1098/rsbl.2012.0945. Epub 2012 Oct 31.


A population genomics perspective on the emergence and adaptation of new plant pathogens in agro-ecosystems.

Stukenbrock EH, Bataillon T.

PLoS Pathog. 2012 Sep;8(9):e1002893. doi: 10.1371/journal.ppat.1002893. Epub 2012 Sep 27. No abstract available.


Contrasted patterns of selective pressure in three recent paralogous gene pairs in the Medicago genus (L.).

Ho-Huu J, Ronfort J, De Mita S, Bataillon T, Hochu I, Weber A, Chantret N.

BMC Evol Biol. 2012 Oct 1;12:195. doi: 10.1186/1471-2148-12-195.


Purifying selection and molecular adaptation in the genome of Verminephrobacter, the heritable symbiotic bacteria of earthworms.

Kjeldsen KU, Bataillon T, Pinel N, De Mita S, Lund MB, Panitz F, Bendixen C, Stahl DA, Schramm A.

Genome Biol Evol. 2012;4(3):307-15. doi: 10.1093/gbe/evs014. Epub 2012 Feb 14.


Extensive X-linked adaptive evolution in central chimpanzees.

Hvilsom C, Qian Y, Bataillon T, Li Y, Mailund T, Sallé B, Carlsen F, Li R, Zheng H, Jiang T, Jiang H, Jin X, Munch K, Hobolth A, Siegismund HR, Wang J, Schierup MH.

Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):2054-9. doi: 10.1073/pnas.1106877109. Epub 2012 Jan 23.


The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species.

Stukenbrock EH, Bataillon T, Dutheil JY, Hansen TT, Li R, Zala M, McDonald BA, Wang J, Schierup MH.

Genome Res. 2011 Dec;21(12):2157-66. doi: 10.1101/gr.118851.110. Epub 2011 Oct 12.


Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula.

Branca A, Paape TD, Zhou P, Briskine R, Farmer AD, Mudge J, Bharti AK, Woodward JE, May GD, Gentzbittel L, Ben C, Denny R, Sadowsky MJ, Ronfort J, Bataillon T, Young ND, Tiffin P.

Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):E864-70. doi: 10.1073/pnas.1104032108. Epub 2011 Sep 26.


Genomic determinants of protein evolution and polymorphism in Arabidopsis.

Slotte T, Bataillon T, Hansen TT, St Onge K, Wright SI, Schierup MH.

Genome Biol Evol. 2011;3:1210-9. doi: 10.1093/gbe/evr094. Epub 2011 Sep 16.


Cost of adaptation and fitness effects of beneficial mutations in Pseudomonas fluorescens.

Bataillon T, Zhang T, Kassen R.

Genetics. 2011 Nov;189(3):939-49. doi: 10.1534/genetics.111.130468. Epub 2011 Aug 25.


Molecular adaptation in flowering and symbiotic recognition pathways: insights from patterns of polymorphism in the legume Medicago truncatula.

De Mita S, Chantret N, Loridon K, Ronfort J, Bataillon T.

BMC Evol Biol. 2011 Aug 1;11:229. doi: 10.1186/1471-2148-11-229.


Molecular footprints of local adaptation in two Mediterranean conifers.

Grivet D, Sebastiani F, Alía R, Bataillon T, Torre S, Zabal-Aguirre M, Vendramin GG, González-Martínez SC.

Mol Biol Evol. 2011 Jan;28(1):101-16. doi: 10.1093/molbev/msq190. Epub 2010 Jul 23.


Insertion and deletion processes in recent human history.

Sjödin P, Bataillon T, Schierup MH.

PLoS One. 2010 Jan 19;5(1):e8650. doi: 10.1371/journal.pone.0008650.


The properties of adaptive walks in evolving populations of fungus.

Schoustra SE, Bataillon T, Gifford DR, Kassen R.

PLoS Biol. 2009 Nov;7(11):e1000250. doi: 10.1371/journal.pbio.1000250. Epub 2009 Nov 24.


A comparative view of the evolution of grasses under domestication.

Glémin S, Bataillon T.

New Phytol. 2009;183(2):273-90. doi: 10.1111/j.1469-8137.2009.02884.x. Epub 2009 Jun 9. Review.


The evolution of self-fertilization in perennials.

Morgan MT, Schoen DJ, Bataillon TM.

Am Nat. 1997 Nov;150(5):618-38. doi: 10.1086/286085.


Grinding up wheat: a massive loss of nucleotide diversity since domestication.

Haudry A, Cenci A, Ravel C, Bataillon T, Brunel D, Poncet C, Hochu I, Poirier S, Santoni S, Glémin S, David J.

Mol Biol Evol. 2007 Jul;24(7):1506-17. Epub 2007 Apr 18.


Marker-based investigation of inbreeding depression in the endangered species Brassica insularis.

Glémin S, Vimond L, Ronfort J, Bataillon T, Mignot A.

Heredity (Edinb). 2006 Oct;97(4):304-11. Epub 2006 Jul 19.


The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers.

Bataillon T, Mailund T, Thorlacius S, Steingrimsson E, Rafnar T, Halldorsson MM, Calian V, Schierup MH.

Eur J Hum Genet. 2006 Sep;14(9):1044-53. Epub 2006 May 31.


Evidence for a large-scale population structure among accessions of Arabidopsis thaliana: possible causes and consequences for the distribution of linkage disequilibrium.

Ostrowski MF, David J, Santoni S, McKhann H, Reboud X, Le Corre V, Camilleri C, Brunel D, Bouchez D, Faure B, Bataillon T.

Mol Ecol. 2006 May;15(6):1507-17.


Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria.

Kassen R, Bataillon T.

Nat Genet. 2006 Apr;38(4):484-8. Epub 2006 Mar 19.


Molecular evolution and positive selection of the symbiotic gene NORK in Medicago truncatula.

De Mita S, Santoni S, Hochu I, Ronfort J, Bataillon T.

J Mol Evol. 2006 Feb;62(2):234-44. Epub 2006 Feb 10.


Sex inheritance in gynodioecious species: a polygenic view.

Ehlers BK, Maurice S, Bataillon T.

Proc Biol Sci. 2005 Sep 7;272(1574):1795-802.


Estimation of long-term effective population sizes through the history of durum wheat using microsatellite data.

Thuillet AC, Bataillon T, Poirier S, Santoni S, David JL.

Genetics. 2005 Mar;169(3):1589-99. Epub 2004 Nov 15.

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