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The C-terminal tail of the yeast mitochondrial transcription factor Mtf1 coordinates template strand alignment, DNA scrunching and timely transition into elongation.

Basu U, Lee SW, Deshpande A, Shen J, Sohn BK, Cho H, Kim H, Patel SS.

Nucleic Acids Res. 2020 Jan 25. pii: gkaa040. doi: 10.1093/nar/gkaa040. [Epub ahead of print]


Long-time position distribution of an active Brownian particle in two dimensions.

Basu U, Majumdar SN, Rosso A, Schehr G.

Phys Rev E. 2019 Dec;100(6-1):062116. doi: 10.1103/PhysRevE.100.062116.


NHC-gold compounds mediate immune suppression through induction of AHR-TGFβ1 signalling in vitro and in scurfy mice.

Cheng X, Haeberle S, Luca Shytaj I, Gama-Brambila RA, Theobald J, Ghafoory S, Wölker J, Basu U, Schmidt C, Timm A, Taškova K, Bauer AS, Hoheisel J, Tsopoulidis N, Fackler OT, Savarino A, Andrade-Navarro MA, Ott I, Lusic M, Hadaschik EN, Wölfl S.

Commun Biol. 2020 Jan 3;3(1):10. doi: 10.1038/s42003-019-0716-8.


NHC-gold compounds mediate immune suppression through induction of AHR-TGFβ1 signalling in vitro and in scurfy mice.

Cheng X, Haeberle S, Luca Shytaj I, Gama-Brambila RA, Theobald J, Ghafoory S, Wölker J, Basu U, Schmidt C, Timm A, Taškova K, Bauer AS, Hoheisel J, Tsopoulidis N, Fackler OT, Savarino A, Andrade-Navarro MA, Ott I, Lusic M, Hadaschik EN, Wölfl S.

Commun Biol. 2020 Jan 3;3:10. doi: 10.1038/s42003-019-0716-8. eCollection 2020.


A Genetic Screen in Drosophila To Identify Novel Regulation of Cell Growth by Phosphoinositide Signaling.

Janardan V, Sharma S, Basu U, Raghu P.

G3 (Bethesda). 2020 Jan 7;10(1):57-67. doi: 10.1534/g3.119.400851.


An Erlotinib gold(I) conjugate for combating triple-negative breast cancer.

Ortega E, Zamora A, Basu U, Lippmann P, Rodríguez V, Janiak C, Ott I, Ruiz J.

J Inorg Biochem. 2019 Oct 30;203:110910. doi: 10.1016/j.jinorgbio.2019.110910. [Epub ahead of print]


Symmetric exclusion process under stochastic resetting.

Basu U, Kundu A, Pal A.

Phys Rev E. 2019 Sep;100(3-1):032136. doi: 10.1103/PhysRevE.100.032136.


Orally Administrable Therapeutic Synthetic Nanoparticle for Zika Virus.

Surnar B, Kamran MZ, Shah AS, Basu U, Kolishetti N, Deo S, Jayaweera DT, Daunert S, Dhar S.

ACS Nano. 2019 Oct 22;13(10):11034-11048. doi: 10.1021/acsnano.9b02807. Epub 2019 Oct 11.


Genomic and Proteomic Characterizations of Sfin-1, a Novel Lytic Phage Infecting Multidrug-Resistant Shigella spp. and Escherichia coli C.

Ahamed ST, Roy B, Basu U, Dutta S, Ghosh AN, Bandyopadhyay B, Giri N.

Front Microbiol. 2019 Aug 22;10:1876. doi: 10.3389/fmicb.2019.01876. eCollection 2019.


Polymeric Encapsulation of Novel Homoleptic Bis(dipyrrinato) Zinc(II) Complexes with Long Lifetimes for Applications as Photodynamic Therapy Photosensitisers.

Karges J, Basu U, Blacque O, Chao H, Gasser G.

Angew Chem Int Ed Engl. 2019 Oct 1;58(40):14334-14340. doi: 10.1002/anie.201907856. Epub 2019 Aug 30. Review.


Genome-wide cis-regulatory signatures for modulation of agronomic traits as exemplified by drought yield index (DYI) in chickpea.

Sharma A, Basu U, Malik N, Daware A, Thakro V, Narnoliya L, Bajaj D, Tripathi S, Hegde VS, Upadhyaya HD, Tyagi AK, Parida SK.

Funct Integr Genomics. 2019 Nov;19(6):973-992. doi: 10.1007/s10142-019-00691-2. Epub 2019 Jun 8.


Redox-sensitive calcium/calmodulin-dependent protein kinase IIα in angiotensin II intra-neuronal signaling and hypertension.

Basu U, Case AJ, Liu J, Tian J, Li YL, Zimmerman MC.

Redox Biol. 2019 Oct;27:101230. doi: 10.1016/j.redox.2019.101230. Epub 2019 May 30.


Identification of lncRNAs Responsive to Infection by Plasmodiophora brassicae in Clubroot-Susceptible and -Resistant Brassica napus Lines Carrying Resistance Introgressed from Rutabaga.

Summanwar A, Basu U, Rahman H, Kav N.

Mol Plant Microbe Interact. 2019 Oct;32(10):1360-1377. doi: 10.1094/MPMI-12-18-0341-R. Epub 2019 Aug 15.


Corrigendum to "Nuclear targeting terpyridine iron(II) complexes for cellular imaging and remarkable photocytotoxicity" [J. Inorg. Biochem. 116 (2012) 77-87].

Basu U, Khan I, Koley D, Saha S, Kondaiah P, Chakravarty AR.

J Inorg Biochem. 2019 Jul;196:110692. doi: 10.1016/j.jinorgbio.2019.04.006. Epub 2019 Apr 13. No abstract available.


CLAVATA signaling pathway genes modulating flowering time and flower number in chickpea.

Basu U, Narnoliya L, Srivastava R, Sharma A, Bajaj D, Daware A, Thakro V, Malik N, Upadhyaya HD, Tripathi S, Hegde VS, Tyagi AK, Parida SK.

Theor Appl Genet. 2019 Jul;132(7):2017-2038. doi: 10.1007/s00122-019-03335-y. Epub 2019 Mar 30.


Transcriptional signatures modulating shoot apical meristem morphometric and plant architectural traits enhance yield and productivity in chickpea.

Narnoliya L, Basu U, Bajaj D, Malik N, Thakro V, Daware A, Sharma A, Tripathi S, Hegde VS, Upadhyaya HD, Singh AK, Tyagi AK, Parida SK.

Plant J. 2019 Jun;98(5):864-883. doi: 10.1111/tpj.14284. Epub 2019 Mar 19.


Biology of RNA Surveillance in Development and Disease.

Laffleur B, Basu U.

Trends Cell Biol. 2019 May;29(5):428-445. doi: 10.1016/j.tcb.2019.01.004. Epub 2019 Feb 10. Review.


ABC Transporter-Mediated Transport of Glutathione Conjugates Enhances Seed Yield and Quality in Chickpea.

Basu U, Upadhyaya HD, Srivastava R, Daware A, Malik N, Sharma A, Bajaj D, Narnoliya L, Thakro V, Kujur A, Tripathi S, Bharadwaj C, Hegde VS, Pandey AK, Singh AK, Tyagi AK, Parida SK.

Plant Physiol. 2019 May;180(1):253-275. doi: 10.1104/pp.18.00934. Epub 2019 Feb 8.


Fine mapping of the major QTL for seed coat color in Brassica rapa var. Yellow Sarson by use of NIL populations and transcriptome sequencing for identification of the candidate genes.

Zhao H, Basu U, Kebede B, Qu C, Li J, Rahman H.

PLoS One. 2019 Feb 4;14(2):e0209982. doi: 10.1371/journal.pone.0209982. eCollection 2019.


RecFOR epistasis group: RecF and RecO have distinct localizations and functions in Escherichia coli.

Henrikus SS, Henry C, Ghodke H, Wood EA, Mbele N, Saxena R, Basu U, van Oijen AM, Cox MM, Robinson A.

Nucleic Acids Res. 2019 Apr 8;47(6):2946-2965. doi: 10.1093/nar/gkz003.


Nanotechnology-mediated crossing of two impermeable membranes to modulate the stars of the neurovascular unit for neuroprotection.

Surnar B, Basu U, Banik B, Ahmad A, Marples B, Kolishetti N, Dhar S.

Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):E12333-E12342. doi: 10.1073/pnas.1816429115. Epub 2018 Dec 10.


Highly efficient 5' capping of mitochondrial RNA with NAD+ and NADH by yeast and human mitochondrial RNA polymerase.

Bird JG, Basu U, Kuster D, Ramachandran A, Grudzien-Nogalska E, Towheed A, Wallace DC, Kiledjian M, Temiakov D, Patel SS, Ebright RH, Nickels BE.

Elife. 2018 Dec 12;7. pii: e42179. doi: 10.7554/eLife.42179.


The Common Key to Class-Switch Recombination and Somatic Hypermutation: Discovery of AID and Its Role in Antibody Gene Diversification.

Leeman-Neill RJ, Lim J, Basu U.

J Immunol. 2018 Nov 1;201(9):2527-2529. doi: 10.4049/jimmunol.1801246. No abstract available.


A designer bow-tie combination therapeutic platform: An approach to resistant cancer treatment by simultaneous delivery of cytotoxic and anti-inflammatory agents and radiation.

Pathak RK, Basu U, Ahmad A, Sarkar S, Kumar A, Surnar B, Ansari S, Wilczek K, Ivan ME, Marples B, Kolishetti N, Dhar S.

Biomaterials. 2018 Dec;187:117-129. doi: 10.1016/j.biomaterials.2018.08.062. Epub 2018 Sep 5.


Reduction of Cisplatin-Induced Ototoxicity without Compromising Its Antitumor Activity.

Surnar B, Kolishetti N, Basu U, Ahmad A, Goka E, Marples B, Kolb D, Lippman ME, Dhar S.

Biochemistry. 2018 Nov 20;57(46):6500-6513. doi: 10.1021/acs.biochem.8b00712. Epub 2018 Nov 7.


Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea.

Basu U, Srivastava R, Bajaj D, Thakro V, Daware A, Malik N, Upadhyaya HD, Parida SK.

Sci Rep. 2018 Sep 5;8(1):13240. doi: 10.1038/s41598-018-29926-1.


Physiological studies and genome-wide microRNA profiling of cold-stressed Brassica napus.

Megha S, Basu U, Joshi RK, Kav NNV.

Plant Physiol Biochem. 2018 Nov;132:1-17. doi: 10.1016/j.plaphy.2018.08.027. Epub 2018 Aug 22.


Expression and Function of Tetraspanins and Their Interacting Partners in B Cells.

Zou F, Wang X, Han X, Rothschild G, Zheng SG, Basu U, Sun J.

Front Immunol. 2018 Jul 18;9:1606. doi: 10.3389/fimmu.2018.01606. eCollection 2018. Review.


Regulation of PI4P levels by PI4KIIIα during G-protein-coupled PLC signaling in Drosophila photoreceptors.

Balakrishnan SS, Basu U, Shinde D, Thakur R, Jaiswal M, Raghu P.

J Cell Sci. 2018 Aug 3;131(15). pii: jcs217257. doi: 10.1242/jcs.217257.


Negative differential mobility in interacting particle systems.

Chatterjee AK, Basu U, Mohanty PK.

Phys Rev E. 2018 May;97(5-1):052137. doi: 10.1103/PhysRevE.97.052137.


Extrapolation to Nonequilibrium from Coarse-Grained Response Theory.

Basu U, Helden L, Krüger M.

Phys Rev Lett. 2018 May 4;120(18):180604. doi: 10.1103/PhysRevLett.120.180604.


Genetic dissection of photosynthetic efficiency traits for enhancing seed yield in chickpea.

Basu U, Bajaj D, Sharma A, Malik N, Daware A, Narnoliya L, Thakro V, Upadhyaya HD, Kumar R, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK.

Plant Cell Environ. 2019 Jan;42(1):158-173. doi: 10.1111/pce.13319. Epub 2018 Jul 30.


Universal Gaussian behavior of driven lattice gases at short times.

Volpati V, Basu U, Caracciolo S, Gambassi A.

Phys Rev E. 2017 Nov;96(5-1):052136. doi: 10.1103/PhysRevE.96.052136. Epub 2017 Nov 27.


RNA Exosome Complex-Mediated Control of Redox Status in Pluripotent Stem Cells.

Skamagki M, Zhang C, Ross CA, Ananthanarayanan A, Liu Z, Mu Q, Basu U, Wang J, Zhao R, Li H, Kim K.

Stem Cell Reports. 2017 Oct 10;9(4):1053-1061. doi: 10.1016/j.stemcr.2017.08.024.


A Multiple QTL-Seq Strategy Delineates Potential Genomic Loci Governing Flowering Time in Chickpea.

Srivastava R, Upadhyaya HD, Kumar R, Daware A, Basu U, Shimray PW, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK.

Front Plant Sci. 2017 Jul 11;8:1105. doi: 10.3389/fpls.2017.01105. eCollection 2017.


Genetic dissection of plant growth habit in chickpea.

Upadhyaya HD, Bajaj D, Srivastava R, Daware A, Basu U, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK.

Funct Integr Genomics. 2017 Nov;17(6):711-723. doi: 10.1007/s10142-017-0566-8. Epub 2017 Jun 9.


The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity.

Rialdi A, Hultquist J, Jimenez-Morales D, Peralta Z, Campisi L, Fenouil R, Moshkina N, Wang ZZ, Laffleur B, Kaake RM, McGregor MJ, Haas K, Pefanis E, Albrecht RA, Pache L, Chanda S, Jen J, Ochando J, Byun M, Basu U, García-Sastre A, Krogan N, van Bakel H, Marazzi I.

Cell. 2017 May 4;169(4):679-692.e14. doi: 10.1016/j.cell.2017.04.021.


Nuclear Proximity of Mtr4 to RNA Exosome Restricts DNA Mutational Asymmetry.

Lim J, Giri PK, Kazadi D, Laffleur B, Zhang W, Grinstein V, Pefanis E, Brown LM, Ladewig E, Martin O, Chen Y, Rabadan R, Boyer F, Rothschild G, Cogné M, Pinaud E, Deng H, Basu U.

Cell. 2017 Apr 20;169(3):523-537.e15. doi: 10.1016/j.cell.2017.03.043.


Regulation of low temperature stress in plants by microRNAs.

Megha S, Basu U, Kav NNV.

Plant Cell Environ. 2018 Jan;41(1):1-15. doi: 10.1111/pce.12956. Epub 2017 May 16. Review.


Short-Time Behavior and Criticality of Driven Lattice Gases.

Basu U, Volpati V, Caracciolo S, Gambassi A.

Phys Rev Lett. 2017 Feb 3;118(5):050602. doi: 10.1103/PhysRevLett.118.050602. Epub 2017 Feb 3.


Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability.

Rothschild G, Basu U.

Trends Genet. 2017 Feb;33(2):143-154. doi: 10.1016/j.tig.2016.12.002. Epub 2017 Jan 10. Review.


Phase separation transition in a nonconserved two-species model.

Basu U.

Phys Rev E. 2016 Dec;94(6-1):062137. doi: 10.1103/PhysRevE.94.062137. Epub 2016 Dec 27.


RNA Exosome and Non-coding RNA-Coupled Mechanisms in AID-Mediated Genomic Alterations.

Laffleur B, Basu U, Lim J.

J Mol Biol. 2017 Oct 27;429(21):3230-3241. doi: 10.1016/j.jmb.2016.12.021. Epub 2017 Jan 7. Review.


Differential gene expression and filamentation of Listeria monocytogenes 08-5923 exposed to sodium lactate and sodium diacetate.

Liu X, Basu U, Miller P, McMullen LM.

Food Microbiol. 2017 May;63:153-158. doi: 10.1016/ Epub 2016 Nov 18.


Human mitochondrial transcription factors TFAM and TFB2M work synergistically in promoter melting during transcription initiation.

Ramachandran A, Basu U, Sultana S, Nandakumar D, Patel SS.

Nucleic Acids Res. 2017 Jan 25;45(2):861-874. doi: 10.1093/nar/gkw1157. Epub 2016 Nov 29.


The Platin-X series: activation, targeting, and delivery.

Basu U, Banik B, Wen R, Pathak RK, Dhar S.

Dalton Trans. 2016 Aug 16;45(33):12992-3004. doi: 10.1039/c6dt01738j. Review.


Photoactive platinum(ii) β-diketonates as dual action anticancer agents.

Raza MK, Mitra K, Shettar A, Basu U, Kondaiah P, Chakravarty AR.

Dalton Trans. 2016 Aug 16;45(33):13234-43. doi: 10.1039/c6dt02590k.


Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus.

Joshi RK, Megha S, Basu U, Rahman MH, Kav NN.

PLoS One. 2016 Jul 7;11(7):e0158784. doi: 10.1371/journal.pone.0158784. eCollection 2016.


Control of diverse subcellular processes by a single multi-functional lipid phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2].

Kolay S, Basu U, Raghu P.

Biochem J. 2016 Jun 15;473(12):1681-92. doi: 10.1042/BCJ20160069. Review.


A global study of transcriptome dynamics in canola (Brassica napus L.) responsive to Sclerotinia sclerotiorum infection using RNA-Seq.

Joshi RK, Megha S, Rahman MH, Basu U, Kav NN.

Gene. 2016 Sep 15;590(1):57-67. doi: 10.1016/j.gene.2016.06.003. Epub 2016 Jun 2.


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