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Items: 1 to 50 of 167

1.

Transcriptional Signatures Modulating SAM Morphometric and Plant Architectural Traits Enhance Yield and Productivity in Chickpea.

Narnoliya L, Basu U, Bajaj D, Malik N, Thakro V, Daware A, Sharma A, Tripathi S, Hegde VS, Upadhyaya HD, Singh AK, Tyagi AK, Parida SK.

Plant J. 2019 Feb 13. doi: 10.1111/tpj.14284. [Epub ahead of print]

PMID:
30758092
2.

Biology of RNA Surveillance in Development and Disease.

Laffleur B, Basu U.

Trends Cell Biol. 2019 Feb 9. pii: S0962-8924(19)30005-4. doi: 10.1016/j.tcb.2019.01.004. [Epub ahead of print] Review.

PMID:
30755352
3.

ABC transporter-mediated transport of glutathione conjugates enhances seed yield and quality in chickpea.

Basu U, Upadhyaya HD, Srivastava R, Daware A, Malik N, Sharma A, Bajaj D, Narnoliya L, Thakro V, Kujur A, Tripathi S, Bharadwaj C, Hegde VS, Pandey AK, Singh AK, Tyagi AK, Parida SK.

Plant Physiol. 2019 Feb 8. pii: pp.00934.2018. doi: 10.1104/pp.18.00934. [Epub ahead of print]

PMID:
30737266
4.

Fine mapping of the major QTL for seed coat color in Brassica rapa var. Yellow Sarson by use of NIL populations and transcriptome sequencing for identification of the candidate genes.

Zhao H, Basu U, Kebede B, Qu C, Li J, Rahman H.

PLoS One. 2019 Feb 4;14(2):e0209982. doi: 10.1371/journal.pone.0209982. eCollection 2019.

5.

RecFOR epistasis group: RecF and RecO have distinct localizations and functions in Escherichia coli.

Henrikus SS, Henry C, Ghodke H, Wood EA, Mbele N, Saxena R, Basu U, van Oijen AM, Cox MM, Robinson A.

Nucleic Acids Res. 2019 Jan 18. doi: 10.1093/nar/gkz003. [Epub ahead of print]

PMID:
30657965
6.

Nanotechnology-mediated crossing of two impermeable membranes to modulate the stars of the neurovascular unit for neuroprotection.

Surnar B, Basu U, Banik B, Ahmad A, Marples B, Kolishetti N, Dhar S.

Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):E12333-E12342. doi: 10.1073/pnas.1816429115. Epub 2018 Dec 10.

PMID:
30530697
7.

Highly efficient 5' capping of mitochondrial RNA with NAD+ and NADH by yeast and human mitochondrial RNA polymerase.

Bird JG, Basu U, Kuster D, Ramachandran A, Grudzien-Nogalska E, Towheed A, Wallace DC, Kiledjian M, Temiakov D, Patel SS, Ebright RH, Nickels BE.

Elife. 2018 Dec 12;7. pii: e42179. doi: 10.7554/eLife.42179.

8.

The Common Key to Class-Switch Recombination and Somatic Hypermutation: Discovery of AID and Its Role in Antibody Gene Diversification.

Leeman-Neill RJ, Lim J, Basu U.

J Immunol. 2018 Nov 1;201(9):2527-2529. doi: 10.4049/jimmunol.1801246. No abstract available.

PMID:
30348657
9.

A designer bow-tie combination therapeutic platform: An approach to resistant cancer treatment by simultaneous delivery of cytotoxic and anti-inflammatory agents and radiation.

Pathak RK, Basu U, Ahmad A, Sarkar S, Kumar A, Surnar B, Ansari S, Wilczek K, Ivan ME, Marples B, Kolishetti N, Dhar S.

Biomaterials. 2018 Dec;187:117-129. doi: 10.1016/j.biomaterials.2018.08.062. Epub 2018 Sep 5.

PMID:
30336364
10.

Reduction of Cisplatin-Induced Ototoxicity without Compromising Its Antitumor Activity.

Surnar B, Kolishetti N, Basu U, Ahmad A, Goka E, Marples B, Kolb D, Lippman ME, Dhar S.

Biochemistry. 2018 Nov 20;57(46):6500-6513. doi: 10.1021/acs.biochem.8b00712. Epub 2018 Nov 7.

PMID:
30281285
11.

Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea.

Basu U, Srivastava R, Bajaj D, Thakro V, Daware A, Malik N, Upadhyaya HD, Parida SK.

Sci Rep. 2018 Sep 5;8(1):13240. doi: 10.1038/s41598-018-29926-1.

12.

Physiological studies and genome-wide microRNA profiling of cold-stressed Brassica napus.

Megha S, Basu U, Joshi RK, Kav NNV.

Plant Physiol Biochem. 2018 Nov;132:1-17. doi: 10.1016/j.plaphy.2018.08.027. Epub 2018 Aug 22.

PMID:
30170322
13.

Expression and Function of Tetraspanins and Their Interacting Partners in B Cells.

Zou F, Wang X, Han X, Rothschild G, Zheng SG, Basu U, Sun J.

Front Immunol. 2018 Jul 18;9:1606. doi: 10.3389/fimmu.2018.01606. eCollection 2018. Review.

14.

Regulation of PI4P levels by PI4KIIIα during G-protein-coupled PLC signaling in Drosophila photoreceptors.

Balakrishnan SS, Basu U, Shinde D, Thakur R, Jaiswal M, Raghu P.

J Cell Sci. 2018 Aug 3;131(15). pii: jcs217257. doi: 10.1242/jcs.217257.

15.

Negative differential mobility in interacting particle systems.

Chatterjee AK, Basu U, Mohanty PK.

Phys Rev E. 2018 May;97(5-1):052137. doi: 10.1103/PhysRevE.97.052137.

PMID:
29906917
16.

Extrapolation to Nonequilibrium from Coarse-Grained Response Theory.

Basu U, Helden L, Krüger M.

Phys Rev Lett. 2018 May 4;120(18):180604. doi: 10.1103/PhysRevLett.120.180604.

PMID:
29775331
17.

Genetic dissection of photosynthetic efficiency traits for enhancing seed yield in chickpea.

Basu U, Bajaj D, Sharma A, Malik N, Daware A, Narnoliya L, Thakro V, Upadhyaya HD, Kumar R, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK.

Plant Cell Environ. 2019 Jan;42(1):158-173. doi: 10.1111/pce.13319. Epub 2018 Jul 30.

PMID:
29676051
18.

Universal Gaussian behavior of driven lattice gases at short times.

Volpati V, Basu U, Caracciolo S, Gambassi A.

Phys Rev E. 2017 Nov;96(5-1):052136. doi: 10.1103/PhysRevE.96.052136. Epub 2017 Nov 27.

PMID:
29347660
19.

RNA Exosome Complex-Mediated Control of Redox Status in Pluripotent Stem Cells.

Skamagki M, Zhang C, Ross CA, Ananthanarayanan A, Liu Z, Mu Q, Basu U, Wang J, Zhao R, Li H, Kim K.

Stem Cell Reports. 2017 Oct 10;9(4):1053-1061. doi: 10.1016/j.stemcr.2017.08.024.

20.

A Multiple QTL-Seq Strategy Delineates Potential Genomic Loci Governing Flowering Time in Chickpea.

Srivastava R, Upadhyaya HD, Kumar R, Daware A, Basu U, Shimray PW, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK.

Front Plant Sci. 2017 Jul 11;8:1105. doi: 10.3389/fpls.2017.01105. eCollection 2017.

21.

Genetic dissection of plant growth habit in chickpea.

Upadhyaya HD, Bajaj D, Srivastava R, Daware A, Basu U, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK.

Funct Integr Genomics. 2017 Nov;17(6):711-723. doi: 10.1007/s10142-017-0566-8. Epub 2017 Jun 9.

PMID:
28600722
22.

The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity.

Rialdi A, Hultquist J, Jimenez-Morales D, Peralta Z, Campisi L, Fenouil R, Moshkina N, Wang ZZ, Laffleur B, Kaake RM, McGregor MJ, Haas K, Pefanis E, Albrecht RA, Pache L, Chanda S, Jen J, Ochando J, Byun M, Basu U, García-Sastre A, Krogan N, van Bakel H, Marazzi I.

Cell. 2017 May 4;169(4):679-692.e14. doi: 10.1016/j.cell.2017.04.021.

23.

Nuclear Proximity of Mtr4 to RNA Exosome Restricts DNA Mutational Asymmetry.

Lim J, Giri PK, Kazadi D, Laffleur B, Zhang W, Grinstein V, Pefanis E, Brown LM, Ladewig E, Martin O, Chen Y, Rabadan R, Boyer F, Rothschild G, Cogné M, Pinaud E, Deng H, Basu U.

Cell. 2017 Apr 20;169(3):523-537.e15. doi: 10.1016/j.cell.2017.03.043.

24.

Regulation of low temperature stress in plants by microRNAs.

Megha S, Basu U, Kav NNV.

Plant Cell Environ. 2018 Jan;41(1):1-15. doi: 10.1111/pce.12956. Epub 2017 May 16. Review.

PMID:
28346818
25.

Short-Time Behavior and Criticality of Driven Lattice Gases.

Basu U, Volpati V, Caracciolo S, Gambassi A.

Phys Rev Lett. 2017 Feb 3;118(5):050602. doi: 10.1103/PhysRevLett.118.050602. Epub 2017 Feb 3.

26.

Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability.

Rothschild G, Basu U.

Trends Genet. 2017 Feb;33(2):143-154. doi: 10.1016/j.tig.2016.12.002. Epub 2017 Jan 10. Review.

27.

Phase separation transition in a nonconserved two-species model.

Basu U.

Phys Rev E. 2016 Dec;94(6-1):062137. doi: 10.1103/PhysRevE.94.062137. Epub 2016 Dec 27.

PMID:
28085388
28.

RNA Exosome and Non-coding RNA-Coupled Mechanisms in AID-Mediated Genomic Alterations.

Laffleur B, Basu U, Lim J.

J Mol Biol. 2017 Oct 27;429(21):3230-3241. doi: 10.1016/j.jmb.2016.12.021. Epub 2017 Jan 7. Review.

29.

Differential gene expression and filamentation of Listeria monocytogenes 08-5923 exposed to sodium lactate and sodium diacetate.

Liu X, Basu U, Miller P, McMullen LM.

Food Microbiol. 2017 May;63:153-158. doi: 10.1016/j.fm.2016.11.009. Epub 2016 Nov 18.

PMID:
28040163
30.

Human mitochondrial transcription factors TFAM and TFB2M work synergistically in promoter melting during transcription initiation.

Ramachandran A, Basu U, Sultana S, Nandakumar D, Patel SS.

Nucleic Acids Res. 2017 Jan 25;45(2):861-874. doi: 10.1093/nar/gkw1157. Epub 2016 Nov 29.

31.

The Platin-X series: activation, targeting, and delivery.

Basu U, Banik B, Wen R, Pathak RK, Dhar S.

Dalton Trans. 2016 Aug 16;45(33):12992-3004. doi: 10.1039/c6dt01738j. Review.

32.

Photoactive platinum(ii) β-diketonates as dual action anticancer agents.

Raza MK, Mitra K, Shettar A, Basu U, Kondaiah P, Chakravarty AR.

Dalton Trans. 2016 Aug 16;45(33):13234-43. doi: 10.1039/c6dt02590k.

PMID:
27488950
33.

Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus.

Joshi RK, Megha S, Basu U, Rahman MH, Kav NN.

PLoS One. 2016 Jul 7;11(7):e0158784. doi: 10.1371/journal.pone.0158784. eCollection 2016.

34.

Control of diverse subcellular processes by a single multi-functional lipid phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2].

Kolay S, Basu U, Raghu P.

Biochem J. 2016 Jun 15;473(12):1681-92. doi: 10.1042/BCJ20160069. Review.

PMID:
27288030
35.

A global study of transcriptome dynamics in canola (Brassica napus L.) responsive to Sclerotinia sclerotiorum infection using RNA-Seq.

Joshi RK, Megha S, Rahman MH, Basu U, Kav NN.

Gene. 2016 Sep 15;590(1):57-67. doi: 10.1016/j.gene.2016.06.003. Epub 2016 Jun 2.

PMID:
27265030
36.

A Quantitative PCR System for Measuring Sclerotinia sclerotiorum in Canola (Brassica napus).

Ziesman BR, Turkington TK, Basu U, Strelkov SE.

Plant Dis. 2016 May;100(5):984-990. doi: 10.1094/PDIS-05-15-0605-RE. Epub 2016 Feb 25.

PMID:
30686145
37.

Mutations, kataegis and translocations in B cells: understanding AID promiscuous activity.

Casellas R, Basu U, Yewdell WT, Chaudhuri J, Robbiani DF, Di Noia JM.

Nat Rev Immunol. 2016 Mar;16(3):164-76. doi: 10.1038/nri.2016.2. Epub 2016 Feb 22. Review.

38.
39.

Astronomy. ASASSN-15lh: A highly super-luminous supernova.

Dong S, Shappee BJ, Prieto JL, Jha SW, Stanek KZ, Holoien TW, Kochanek CS, Thompson TA, Morrell N, Thompson IB, Basu U, Beacom JF, Bersier D, Brimacombe J, Brown JS, Bufano F, Chen P, Conseil E, Danilet AB, Falco E, Grupe D, Kiyota S, Masi G, Nicholls B, Olivares E F, Pignata G, Pojmanski G, Simonian GV, Szczygiel DM, Woźniak PR.

Science. 2016 Jan 15;351(6270):257-60. doi: 10.1126/science.aac9613.

40.

Association between allopurinol use and hip fracture in older patients.

Basu U, Goodbrand J, McMurdo MET, Donnan PT, McGilchrist M, Frost H, George J, Witham MD.

Bone. 2016 Mar;84:189-193. doi: 10.1016/j.bone.2016.01.003. Epub 2016 Jan 6.

PMID:
26769005
41.

Effects of prepartum oilseed supplements on subclinical endometritis, pro- and anti-inflammatory cytokine transcripts in endometrial cells and postpartum ovarian function in dairy cows.

Salehi R, Colazo MG, Gobikrushanth M, Basu U, Ambrose DJ.

Reprod Fertil Dev. 2017 Apr;29(4):747-758. doi: 10.1071/RD15334.

PMID:
26764901
42.

Transcriptomics Identify CD9 as a Marker of Murine IL-10-Competent Regulatory B Cells.

Sun J, Wang J, Pefanis E, Chao J, Rothschild G, Tachibana I, Chen JK, Ivanov II, Rabadan R, Takeda Y, Basu U.

Cell Rep. 2015 Nov 10;13(6):1110-1117. doi: 10.1016/j.celrep.2015.09.070. Epub 2015 Oct 29.

43.

Intermuscular and intramuscular adipose tissues: Bad vs. good adipose tissues.

Hausman GJ, Basu U, Du M, Fernyhough-Culver M, Dodson MV.

Adipocyte. 2014 Dec 10;3(4):242-55. doi: 10.4161/adip.28546. eCollection 2014 Oct-Dec.

44.

Adipose depots differ in cellularity, adipokines produced, gene expression, and cell systems.

Dodson MV, Du M, Wang S, Bergen WG, Fernyhough-Culver M, Basu U, Poulos SP, Hausman GJ.

Adipocyte. 2014 Dec 10;3(4):236-41. doi: 10.4161/adip.28321. eCollection 2014 Oct-Dec.

45.

Malaria-Induced B Cell Genomic Instability.

Rothschild G, von Krusenstiern AN, Basu U.

Cell. 2015 Aug 13;162(4):697-8. doi: 10.1016/j.cell.2015.07.051.

46.

An siRNA Screen Identifies the U2 snRNP Spliceosome as a Host Restriction Factor for Recombinant Adeno-associated Viruses.

Schreiber CA, Sakuma T, Izumiya Y, Holditch SJ, Hickey RD, Bressin RK, Basu U, Koide K, Asokan A, Ikeda Y.

PLoS Pathog. 2015 Aug 5;11(8):e1005082. doi: 10.1371/journal.ppat.1005082. eCollection 2015 Aug.

47.

Cis-Acting Sequence Elements and Upstream Open Reading Frame in Mouse Utrophin-A 5'-UTR Repress Cap-Dependent Translation.

Ghosh T, Basu U.

PLoS One. 2015 Jul 31;10(7):e0134809. doi: 10.1371/journal.pone.0134809. eCollection 2015.

48.

How Statistical Forces Depend on the Thermodynamics and Kinetics of Driven Media.

Basu U, Maes C, Netočný K.

Phys Rev Lett. 2015 Jun 26;114(25):250601. Epub 2015 Jun 26.

PMID:
26197113
49.

RNA Exosome Regulates AID DNA Mutator Activity in the B Cell Genome.

Pefanis E, Basu U.

Adv Immunol. 2015;127:257-308. doi: 10.1016/bs.ai.2015.04.002. Epub 2015 May 14. Review.

50.

RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity.

Pefanis E, Wang J, Rothschild G, Lim J, Kazadi D, Sun J, Federation A, Chao J, Elliott O, Liu ZP, Economides AN, Bradner JE, Rabadan R, Basu U.

Cell. 2015 May 7;161(4):774-89. doi: 10.1016/j.cell.2015.04.034.

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