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Items: 1 to 50 of 3546

1.

VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database.

Musacchia F, Ciolfi A, Mutarelli M, Bruselles A, Castello R, Pinelli M, Basu S, Banfi S, Casari G, Tartaglia M, Nigro V; TUDP.

BMC Bioinformatics. 2018 Dec 12;19(1):477. doi: 10.1186/s12859-018-2532-4.

PMID:
30541431
2.

Utilizing serum bicarbonate instead of venous pH to transition from intravenous to subcutaneous insulin shortens the duration of insulin infusion in pediatric diabetic ketoacidosis.

Gauntt J, Vaidyanathan P, Basu S.

J Pediatr Endocrinol Metab. 2018 Dec 7. pii: /j/jpem.ahead-of-print/jpem-2018-0394/jpem-2018-0394.xml. doi: 10.1515/jpem-2018-0394. [Epub ahead of print]

PMID:
30530908
3.

Implications of scaling up cardiovascular disease treatment in South Africa: a microsimulation and cost-effectiveness analysis.

Basu S, Wagner RG, Sewpaul R, Reddy P, Davies J.

Lancet Glob Health. 2018 Dec 6. pii: S2214-109X(18)30450-9. doi: 10.1016/S2214-109X(18)30450-9. [Epub ahead of print]

4.

Outcomes Analysis of Children Diagnosed With Hemophagocytic Lymphohistiocytosis in the PICU.

Gregory J, Greenberg J, Basu S.

Pediatr Crit Care Med. 2018 Dec 4. doi: 10.1097/PCC.0000000000001827. [Epub ahead of print]

PMID:
30520798
5.
6.

The distribution of T-cell subsets and the expression of immune checkpoint receptors and ligands in patients with newly diagnosed and relapsed acute myeloid leukemia.

Williams P, Basu S, Garcia-Manero G, Hourigan CS, Oetjen KA, Cortes JE, Ravandi F, Jabbour EJ, Al-Hamal Z, Konopleva M, Ning J, Xiao L, Hidalgo Lopez J, Kornblau SM, Andreeff M, Flores W, Bueso-Ramos C, Blando J, Galera P, Calvo KR, Al-Atrash G, Allison JP, Kantarjian HM, Sharma P, Daver NG.

Cancer. 2018 Nov 30. doi: 10.1002/cncr.31896. [Epub ahead of print]

PMID:
30500073
7.

Interstitial brachytherapy in soft tissue sarcoma: a 5 years institutional experience with Cobalt 60-based high-dose-rate brachytherapy system.

Manir KS, Basu A, Choudhury KB, Basu S, Ghosh K, Gangopadhyay S.

J Contemp Brachytherapy. 2018 Oct;10(5):431-438. doi: 10.5114/jcb.2018.78994. Epub 2018 Oct 31.

8.

Emerging and threatening infectious diseases.

Basu S, Plewczynski D.

Brief Funct Genomics. 2018 Nov 26;17(6):372-373. doi: 10.1093/bfgp/ely038. No abstract available.

PMID:
30476067
9.

Estimation of global insulin use for type 2 diabetes, 2018-30: a microsimulation analysis.

Basu S, Yudkin JS, Kehlenbrink S, Davies JI, Wild SH, Lipska KJ, Sussman JB, Beran D.

Lancet Diabetes Endocrinol. 2018 Nov 20. pii: S2213-8587(18)30303-6. doi: 10.1016/S2213-8587(18)30303-6. [Epub ahead of print]

PMID:
30470520
10.

Reducing chronic disease through changes in food aid: A microsimulation of nutrition and cardiometabolic disease among Palestinian refugees in the Middle East.

Basu S, Yudkin JS, Berkowitz SA, Jawad M, Millett C.

PLoS Med. 2018 Nov 20;15(11):e1002700. doi: 10.1371/journal.pmed.1002700. eCollection 2018 Nov.

11.

Gastroduodenal intussusception due to gastrointestinal stromal tumor.

De U, Basu S.

Clin Case Rep. 2018 Sep 12;6(11):2276-2278. doi: 10.1002/ccr3.1786. eCollection 2018 Nov.

12.

Mitochondrial energetics is impaired in very long-chain acyl-CoA dehydrogenase deficiency and can be rescued by treatment with mitochondria-targeted electron scavengers.

Seminotti B, Leipnitz G, Karunanidhi A, Kochersperger C, Roginskaya VY, Basu S, Wang Y, Wipf P, Van Houten B, Mohsen AW, Vockley J.

Hum Mol Genet. 2018 Nov 16. doi: 10.1093/hmg/ddy403. [Epub ahead of print]

PMID:
30445591
13.

Author Correction: Quantitative 3-D morphometric analysis of individual dendritic spines.

Basu S, Saha PK, Roszkowska M, Magnowska M, Baczynska E, Das N, Plewczynski D, Wlodarczyk J.

Sci Rep. 2018 Nov 15;8(1):17142. doi: 10.1038/s41598-018-35164-2.

14.

Erythrocytic bioactivation of nitrite and its potentiation by far-red light.

Wajih N, Basu S, Ucer KB, Rigal F, Shakya A, Rahbar E, Vachharajani V, Guthold M, Gladwin MT, Smith LM, Kim-Shapiro DB.

Redox Biol. 2018 Nov 3;20:442-450. doi: 10.1016/j.redox.2018.11.001. [Epub ahead of print]

15.

In Vivo Molecular Imaging of Musculoskeletal Inflammation and Infection.

Pawaskar A, Basu S, Jahangiri P, Alavi A.

PET Clin. 2019 Jan;14(1):43-59. doi: 10.1016/j.cpet.2018.08.009. Review.

PMID:
30420221
16.

A secondary structure within a human piRNA modulates its functionality.

Balaratnam S, Hettiarachchilage M, West N, Piontkivska H, Basu S.

Biochimie. 2018 Nov 8;157:72-80. doi: 10.1016/j.biochi.2018.11.002. [Epub ahead of print]

PMID:
30414834
17.

Analysis of magnetic resonance imaging-confirmed soft tissue injury pattern in simple elbow dislocations.

Luokkala T, Temperley D, Basu S, Karjalainen TV, Watts AC.

J Shoulder Elbow Surg. 2018 Nov 8. pii: S1058-2746(18)30605-0. doi: 10.1016/j.jse.2018.08.010. [Epub ahead of print]

PMID:
30414825
18.

Biodistribution and Dosimetry of Indigenous 131I-Rituximab in B-Cell Lymphoma: Pilot Study estimating patient specific dose comparing two different dosimetric methods.

Adnan A, Deep K, Kameswaran M, Nikam D, Chandrakala S, Dash A, Banerjee S, Basu S.

J Nucl Med Technol. 2018 Nov 9. pii: jnmt.118.216754. doi: 10.2967/jnmt.118.216754. [Epub ahead of print]

PMID:
30413603
19.

Comparison of Radioiodine uptake by Gamma Camera and Thyroid uptake probe-based methodologies and Diagnostic Radioiodine Scan in Differentiated thyroid carcinoma.

Menon BK, Bhattacharjee A, Basu S.

J Nucl Med Technol. 2018 Nov 9. pii: jnmt.118.207837. doi: 10.2967/jnmt.118.207837. [Epub ahead of print]

PMID:
30413599
20.

Efficacy, Safety, and Biomarkers of Response to Azacitidine and Nivolumab in Relapsed/Refractory Acute Myeloid Leukemia: A Non-randomized, Open-label, Phase 2 Study.

Daver N, Garcia-Manero G, Basu S, Boddu PC, Alfayez M, Cortes JE, Konopleva M, Ravandi-Kashani F, Jabbour E, Kadia TM, Nogueras-Gonzalez GM, Ning J, Pemmaraju N, DiNardo CD, Andreeff M, Pierce SA, Gordon T, Kornblau SM, Flores W, Alhamal Z, Bueso-Ramos C, Jorgensen JL, Patel KP, Blando J, Allison JP, Sharma P, Kantarjian H.

Cancer Discov. 2018 Nov 8. pii: CD-18-0774. doi: 10.1158/2159-8290.CD-18-0774. [Epub ahead of print]

PMID:
30409776
21.

Protein function prediction from protein-protein interaction network using gene ontology based neighborhood analysis and physico-chemical features.

Saha S, Prasad A, Chatterjee P, Basu S, Nasipuri M.

J Bioinform Comput Biol. 2018 Sep 19:1850025. doi: 10.1142/S0219720018500257. [Epub ahead of print]

PMID:
30400756
22.

Evaluating an intervention addressing stress in emergency department clerical staff.

Norman J, Basu S.

Occup Med (Lond). 2018 Nov 2. doi: 10.1093/occmed/kqy151. [Epub ahead of print]

PMID:
30388278
23.

Near-Far Matching in R: The nearfar Package.

Rigdon J, Baiocchi M, Basu S.

J Stat Softw. 2018;86(CS-5). doi: 10.18637/jss.v086.c05. Epub 2018 Sep 3.

24.
26.

Impact of different standard red blood cell storage temperatures on human and canine RBC hemolysis and chromium survival.

Blaine KP, Cortés-Puch I, Sun J, Wang D, Solomon SB, Feng J, Gladwin MT, Kim-Shapiro DB, Basu S, Perlegas A, West K, Klein HG, Natanson C.

Transfusion. 2018 Nov 1. doi: 10.1111/trf.14997. [Epub ahead of print]

PMID:
30383305
27.

Red Cell Transfusion Practices in Neonatal Intensive Care Unit: An Experience from Tertiary Care Centre.

Dogra K, Kaur G, Basu S, Chawla D.

Indian J Hematol Blood Transfus. 2018 Oct;34(4):671-676. doi: 10.1007/s12288-018-0959-4. Epub 2018 Apr 12.

PMID:
30369739
28.

Branched late-steps of the cytosolic iron-sulphur cluster assembly machinery of Trypanosoma brucei.

Tonini ML, Peña-Diaz P, Haindrich AC, Basu S, Kriegová E, Pierik AJ, Lill R, MacNeill SA, Smith TK, Lukeš J.

PLoS Pathog. 2018 Oct 22;14(10):e1007326. doi: 10.1371/journal.ppat.1007326. eCollection 2018 Oct.

29.
31.

Serological normalisation as a surrogate marker for minimal residual disease negativity in multiple myeloma.

Campbell L, Panitsas F, Basu S, Anyanwu F, Lee S, Ferry B, Ramasamy K.

Br J Haematol. 2018 Oct 18. doi: 10.1111/bjh.15615. [Epub ahead of print] No abstract available.

PMID:
30338523
32.

Design of a cytocompatible hydrogel coating to modulate properties of ceramic-based scaffolds for bone repair.

Pacelli S, Basu S, Berkland C, Wang J, Paul A.

Cell Mol Bioeng. 2018 Jun;11(3):211-217. doi: 10.1007/s12195-018-0521-3. Epub 2018 Apr 6.

PMID:
30338007
33.

Metrocoris sikkimensis sp. nov. (Hemiptera: Heteroptera: Gerridae) from northeastern India, with a key to species of the compar group occurring in India.

Basu S, Chandra K, Venkatesan T.

Zootaxa. 2018 Sep 5;4471(2):369-374. doi: 10.11646/zootaxa.4471.2.9.

PMID:
30313411
34.
35.

Surface Functionalized Prussian Blue-coated Nanostructured Nickel Oxide as a New Biosensor Platform for Catechol Detection.

Roychoudhury A, Basu S, Jha SK.

Anal Sci. 2018;34(10):1163-1169. doi: 10.2116/analsci.17P377.

36.

Prospective Study of Endogenous Hormones and Incidence of Venous Thromboembolism: The Atherosclerosis Risk in Communities Study.

Roetker NS, MacLehose RF, Hoogeveen RC, Ballantyne CM, Basu S, Cushman M, Folsom AR.

Thromb Haemost. 2018 Nov;118(11):1940-1950. doi: 10.1055/s-0038-1673613. Epub 2018 Oct 8.

PMID:
30296818
37.

Maternal Mortality Audit in Delhi: Further Perspectives.

Basu S.

Indian J Community Med. 2018 Jul-Sep;43(3):243. doi: 10.4103/ijcm.IJCM_258_17. No abstract available.

38.

Semi-interpenetrating hydrogels from carboxymethyl guar gum and gelatin for ciprofloxacin sustained release.

Ghosh SK, Das A, Basu A, Halder A, Das S, Basu S, Abdullah MF, Mukherjee A, Kundu S.

Int J Biol Macromol. 2018 Dec;120(Pt B):1823-1833. doi: 10.1016/j.ijbiomac.2018.09.212. Epub 2018 Oct 1.

PMID:
30287366
39.

In an unhealthy food system, what role should SNAP play?

Seligman HK, Basu S.

PLoS Med. 2018 Oct 2;15(10):e1002662. doi: 10.1371/journal.pmed.1002662. eCollection 2018 Oct.

40.

Free-electron laser data for multiple-particle fluctuation scattering analysis.

Pande K, Donatelli JJ, Malmerberg E, Foucar L, Poon BK, Sutter M, Botha S, Basu S, Bruce Doak R, Dörner K, Epp SW, Englert L, Fromme R, Hartmann E, Hartmann R, Hauser G, Hattne J, Hosseinizadeh A, Kassemeyer S, Lomb L, Montero SFC, Menzel A, Rolles D, Rudenko A, Seibert MM, Sierra RG, Schwander P, Ourmazd A, Fromme P, Sauter NK, Bogan M, Bozek J, Bostedt C, Schlichting I, Kerfeld CA, Zwart PH.

Sci Data. 2018 Oct 2;5:180201. doi: 10.1038/sdata.2018.201.

41.

Addiction-like Behavior Associated with Mobile Phone Usage among Medical Students in Delhi.

Basu S, Garg S, Singh MM, Kohli C.

Indian J Psychol Med. 2018 Sep-Oct;40(5):446-451. doi: 10.4103/IJPSYM.IJPSYM_59_18.

42.

In situ serial crystallography for rapid de novo membrane protein structure determination.

Huang CY, Olieric V, Howe N, Warshamanage R, Weinert T, Panepucci E, Vogeley L, Basu S, Diederichs K, Caffrey M, Wang M.

Commun Biol. 2018 Aug 27;1:124. doi: 10.1038/s42003-018-0123-6. eCollection 2018.

43.

Cell-cell adhesion: linking Wnt/β-catenin signaling with partial EMT and stemness traits in tumorigenesis.

Basu S, Cheriyamundath S, Ben-Ze'ev A.

F1000Res. 2018 Sep 18;7. pii: F1000 Faculty Rev-1488. doi: 10.12688/f1000research.15782.1. eCollection 2018. Review.

44.

Antibiotic prescribing behavior among physicians: ethical challenges in resource-poor settings.

Basu S, Garg S.

J Med Ethics Hist Med. 2018 May 12;11:5. eCollection 2018.

45.

Evaporation-Oscillation Driven Assembly: Microtailoring the Spatial Ordering of Particles in Sessile Droplets.

Kabi P, Chattopadhyay B, Bhattacharyya S, Chaudhuri S, Basu S.

Langmuir. 2018 Oct 23;34(42):12642-12652. doi: 10.1021/acs.langmuir.8b02840. Epub 2018 Oct 10.

PMID:
30257088
46.

Renal Dysfunction and Recovery following Initial Treatment of Newly Diagnosed Multiple Myeloma.

Derman BA, Reiser J, Basu S, Paner A.

Int J Nephrol. 2018 Sep 5;2018:4654717. doi: 10.1155/2018/4654717. eCollection 2018.

47.

DelPhiPKa: Including salt in the calculations and enabling polar residues to titrate.

Pahari S, Sun L, Basu S, Alexov E.

Proteins. 2018 Dec;86(12):1277-1283. doi: 10.1002/prot.25608. Epub 2018 Oct 26.

PMID:
30252159
48.

Diagnosis, Clinical Presentations, and Outcomes of Nocardia Endophthalmitis.

Dave VP, Pathengay A, Sharma S, Naveen N, Basu S, Pappuru RR, Das T.

Am J Ophthalmol. 2019 Jan;197:53-58. doi: 10.1016/j.ajo.2018.09.007. Epub 2018 Sep 19.

PMID:
30240723
49.

PICU Autopsies: Rates, Patient Characteristics, and the Role of the Medical Examiner.

Basu S, Holubkov R, Dean JM, Meert KL, Berg RA, Carcillo J, Newth CJL, Harrison RE, Pollack MM; Eunice Kennedy Shriver National Institute of Child Health and Human Development Collaborative Pediatric Critical Care Research Network (CPCCRN).

Pediatr Crit Care Med. 2018 Dec;19(12):1137-1145. doi: 10.1097/PCC.0000000000001742.

PMID:
30239389
50.

Author Correction: Molecular architecture of the multifunctional collagen lysyl hydroxylase and glycosyltransferase LH3.

Scietti L, Chiapparino A, De Giorgi F, Fumagalli M, Khoriauli L, Nergadze S, Basu S, Olieric V, Cucca L, Banushi B, Profumo A, Giulotto E, Gissen P, Forneris F.

Nat Commun. 2018 Sep 20;9(1):3912. doi: 10.1038/s41467-018-06481-x.

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