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Items: 19

1.

Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization.

Montanari S, Bianco L, Allen BJ, Martínez-García PJ, Bassil NV, Postman J, Knäbel M, Kitson B, Deng CH, Chagné D, Crepeau MW, Langley CH, Evans K, Dhingra A, Troggio M, Neale DB.

BMC Genomics. 2019 May 2;20(1):331. doi: 10.1186/s12864-019-5712-3.

2.

Development of a reliable Corylus sp. reference database through the implementation of a DNA fingerprinting test.

Freixas-Coutin JA, An S, Postman J, Bassil NV, Yates B, Shukla M, Saxena PK.

Planta. 2019 Jun;249(6):1863-1874. doi: 10.1007/s00425-019-03131-4. Epub 2019 Mar 11.

PMID:
30859306
3.

Validation of SNP markers for fruit quality and disease resistance loci in apple (Malus × domestica Borkh.) using the OpenArray® platform.

Chagné D, Vanderzande S, Kirk C, Profitt N, Weskett R, Gardiner SE, Peace CP, Volz RK, Bassil NV.

Hortic Res. 2019 Mar 1;6:30. doi: 10.1038/s41438-018-0114-2. eCollection 2019.

4.

Mapping a Novel Black Spot Resistance Locus in the Climbing Rose Brite Eyes™ ('RADbrite').

Zurn JD, Zlesak DC, Holen M, Bradeen JM, Hokanson SC, Bassil NV.

Front Plant Sci. 2018 Nov 26;9:1730. doi: 10.3389/fpls.2018.01730. eCollection 2018.

5.

A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome.

VanBuren R, Wai CM, Colle M, Wang J, Sullivan S, Bushakra JM, Liachko I, Vining KJ, Dossett M, Finn CE, Jibran R, Chagné D, Childs K, Edger PP, Mockler TC, Bassil NV.

Gigascience. 2018 Aug 1;7(8). doi: 10.1093/gigascience/giy094.

6.

Clarifying sub-genomic positions of QTLs for flowering habit and fruit quality in U.S. strawberry (Fragaria×ananassa) breeding populations using pedigree-based QTL analysis.

Verma S, Zurn JD, Salinas N, Mathey MM, Denoyes B, Hancock JF, Finn CE, Bassil NV, Whitaker VM.

Hortic Res. 2017 Nov 8;4:17062. doi: 10.1038/hortres.2017.62. eCollection 2017.

7.

Genotyping-by-sequencing enables linkage mapping in three octoploid cultivated strawberry families.

Vining KJ, Salinas N, Tennessen JA, Zurn JD, Sargent DJ, Hancock J, Bassil NV.

PeerJ. 2017 Aug 30;5:e3731. doi: 10.7717/peerj.3731. eCollection 2017.

8.

A High-Density Linkage Map of the Ancestral Diploid Strawberry, , Constructed with Single Nucleotide Polymorphism Markers from the IStraw90 Array and Genotyping by Sequencing.

Mahoney LL, Sargent DJ, Abebe-Akele F, Wood DJ, Ward JA, Bassil NV, Hancock JF, Folta KM, Davis TM.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.08.0071.

9.

Public Availability of a Genotyped Segregating Population May Foster Marker Assisted Breeding (MAB) and Quantitative Trait Loci (QTL) Discovery: An Example Using Strawberry.

Hancock JF, Sooriyapathirana SS, Bassil NV, Stegmeir T, Cai L, Finn CE, Van de Weg E, Weebadde CK.

Front Plant Sci. 2016 May 9;7:619. doi: 10.3389/fpls.2016.00619. eCollection 2016.

10.

The genome of black raspberry (Rubus occidentalis).

VanBuren R, Bryant D, Bushakra JM, Vining KJ, Edger PP, Rowley ER, Priest HD, Michael TP, Lyons E, Filichkin SA, Dossett M, Finn CE, Bassil NV, Mockler TC.

Plant J. 2016 Sep;87(6):535-47. doi: 10.1111/tpj.13215. Epub 2016 Jul 20.

11.

FaRXf1: a locus conferring resistance to angular leaf spot caused by Xanthomonas fragariae in octoploid strawberry.

Roach JA, Verma S, Peres NA, Jamieson AR, van de Weg WE, Bink MC, Bassil NV, Lee S, Whitaker VM.

Theor Appl Genet. 2016 Jun;129(6):1191-201. doi: 10.1007/s00122-016-2695-1. Epub 2016 Feb 24.

PMID:
26910360
12.

Simple sequence repeat markers that identify Claviceps species and strains.

Gilmore BS, Alderman SC, Knaus BJ, Bassil NV, Martin RC, Dombrowski JE, Dung JKS.

Fungal Biol Biotechnol. 2016 Jan 15;3:1. doi: 10.1186/s40694-016-0019-5. eCollection 2016.

13.

A genetic linkage map of black raspberry (Rubus occidentalis) and the mapping of Ag(4) conferring resistance to the aphid Amphorophora agathonica.

Bushakra JM, Bryant DW, Dossett M, Vining KJ, VanBuren R, Gilmore BS, Lee J, Mockler TC, Finn CE, Bassil NV.

Theor Appl Genet. 2015 Aug;128(8):1631-46. doi: 10.1007/s00122-015-2541-x. Epub 2015 Jun 3.

14.

Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa.

Bassil NV, Davis TM, Zhang H, Ficklin S, Mittmann M, Webster T, Mahoney L, Wood D, Alperin ES, Rosyara UR, Koehorst-Vanc Putten H, Monfort A, Sargent DJ, Amaya I, Denoyes B, Bianco L, van Dijk T, Pirani A, Iezzoni A, Main D, Peace C, Yang Y, Whitaker V, Verma S, Bellon L, Brew F, Herrera R, van de Weg E.

BMC Genomics. 2015 Mar 7;16:155. doi: 10.1186/s12864-015-1310-1.

15.

Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation.

Rowland LJ, Alkharouf N, Darwish O, Ogden EL, Polashock JJ, Bassil NV, Main D.

BMC Plant Biol. 2012 Apr 2;12:46. doi: 10.1186/1471-2229-12-46.

16.

An enhanced microsatellite map of diploid Fragaria.

Sargent DJ, Clarke J, Simpson DW, Tobutt KR, Arús P, Monfort A, Vilanova S, Denoyes-Rothan B, Rousseau M, Folta KM, Bassil NV, Battey NH.

Theor Appl Genet. 2006 May;112(7):1349-59. Epub 2006 Feb 28.

PMID:
16505996
17.

A genetic linkage map for hazelnut (Corylus avellana L.) based on RAPD and SSR markers.

Mehlenbacher SA, Brown RN, Nouhra ER, Gökirmak T, Bassil NV, Kubisiak TL.

Genome. 2006 Feb;49(2):122-33.

PMID:
16498462
18.

RAPD markers linked to eastern filbert blight resistance in Corylus avellana.

Mehlenbacher SA, Brown RN, Davis JW, Chen H, Bassil NV, Smith DC, Kubisiak TL.

Theor Appl Genet. 2004 Feb;108(4):651-6. Epub 2003 Oct 21.

PMID:
14569427
19.

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