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Items: 45

1.

iSeg: an efficient algorithm for segmentation of genomic and epigenomic data.

Girimurugan SB, Liu Y, Lung PY, Vera DL, Dennis JH, Bass HW, Zhang J.

BMC Bioinformatics. 2018 Apr 11;19(1):131. doi: 10.1186/s12859-018-2140-3.

2.

Review: Plant G-quadruplex (G4) motifs in DNA and RNA; abundant, intriguing sequences of unknown function.

Griffin BD, Bass HW.

Plant Sci. 2018 Apr;269:143-147. doi: 10.1016/j.plantsci.2018.01.011. Epub 2018 Feb 2. Review.

3.

Non-Mendelian Single-Nucleotide Polymorphism Inheritance and Atypical Meiotic Configurations are Prevalent in Hop.

Zhang D, Easterling KA, Pitra NJ, Coles MC, Buckler ES, Bass HW, Matthews PD.

Plant Genome. 2017 Nov;10(3). doi: 10.3835/plantgenome2017.04.0032.

4.

Take a look at plant DNA replication: Recent insights and new questions.

Savadel SD, Bass HW.

Plant Signal Behav. 2017 Apr 3;12(4):e1311437. doi: 10.1080/15592324.2017.1311437.

5.

Open chromatin reveals the functional maize genome.

Rodgers-Melnick E, Vera DL, Bass HW, Buckler ES.

Proc Natl Acad Sci U S A. 2016 May 31;113(22):E3177-84. doi: 10.1073/pnas.1525244113. Epub 2016 May 16.

6.

Defining multiple, distinct, and shared spatiotemporal patterns of DNA replication and endoreduplication from 3D image analysis of developing maize (Zea mays L.) root tip nuclei.

Bass HW, Hoffman GG, Lee TJ, Wear EE, Joseph SR, Allen GC, Hanley-Bowdoin L, Thompson WF.

Plant Mol Biol. 2015 Nov;89(4-5):339-51. doi: 10.1007/s11103-015-0364-4. Epub 2015 Sep 22.

7.

The maize (Zea mays L.) nucleoside diphosphate kinase1 (ZmNDPK1) gene encodes a human NM23-H2 homologue that binds and stabilizes G-quadruplex DNA.

Kopylov M, Bass HW, Stroupe ME.

Biochemistry. 2015 Mar 10;54(9):1743-57. doi: 10.1021/bi501284g. Epub 2015 Feb 24.

PMID:
25679041
8.

G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient deprivation.

Andorf CM, Kopylov M, Dobbs D, Koch KE, Stroupe ME, Lawrence CJ, Bass HW.

J Genet Genomics. 2014 Dec 20;41(12):627-47. doi: 10.1016/j.jgg.2014.10.004. Epub 2014 Nov 4.

9.

Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.

Vera DL, Madzima TF, Labonne JD, Alam MP, Hoffman GG, Girimurugan SB, Zhang J, McGinnis KM, Dennis JH, Bass HW.

Plant Cell. 2014 Oct;26(10):3883-93. doi: 10.1105/tpc.114.130609. Epub 2014 Oct 31.

10.

A dynamic meiotic SUN belt includes the zygotene-stage telomere bouquet and is disrupted in chromosome segregation mutants of maize (Zea mays L.).

Murphy SP, Gumber HK, Mao Y, Bass HW.

Front Plant Sci. 2014 Jul 11;5:314. doi: 10.3389/fpls.2014.00314. eCollection 2014.

11.

A maize root tip system to study DNA replication programmes in somatic and endocycling nuclei during plant development.

Bass HW, Wear EE, Lee TJ, Hoffman GG, Gumber HK, Allen GC, Thompson WF, Hanley-Bowdoin L.

J Exp Bot. 2014 Jun;65(10):2747-56. doi: 10.1093/jxb/ert470. Epub 2014 Jan 21. Review.

PMID:
24449386
12.

Genome-wide prediction of nucleosome occupancy in maize reveals plant chromatin structural features at genes and other elements at multiple scales.

Fincher JA, Vera DL, Hughes DD, McGinnis KM, Dennis JH, Bass HW.

Plant Physiol. 2013 Jun;162(2):1127-41. doi: 10.1104/pp.113.216432. Epub 2013 Apr 9.

13.

Three-dimensional acrylamide fluorescence in situ hybridization for plant cells.

Howe ES, Murphy SP, Bass HW.

Methods Mol Biol. 2013;990:53-66. doi: 10.1007/978-1-62703-333-6_6.

PMID:
23559202
14.

SUNrises on the International Plant Nucleus Consortium: SEB Salzburg 2012.

Graumann K, Bass HW, Parry G.

Nucleus. 2013 Jan-Feb;4(1):3-7. doi: 10.4161/nucl.23385. Epub 2013 Jan 1.

15.

Maize histone H2B-mCherry: a new fluorescent chromatin marker for somatic and meiotic chromosome research.

Howe ES, Clemente TE, Bass HW.

DNA Cell Biol. 2012 Jun;31(6):925-38. doi: 10.1089/dna.2011.1514. Epub 2012 Jun 4.

16.

Development of pachytene FISH maps for six maize chromosomes and their integration with other maize maps for insights into genome structure variation.

Figueroa DM, Bass HW.

Chromosome Res. 2012 May;20(4):363-80. doi: 10.1007/s10577-012-9281-4. Epub 2012 May 16.

18.

QTL Mapping and Candidate Gene Analysis of Telomere Length Control Factors in Maize (Zea mays L.).

Brown AN, Lauter N, Vera DL, McLaughlin-Large KA, Steele TM, Fredette NC, Bass HW.

G3 (Bethesda). 2011 Nov;1(6):437-50. doi: 10.1534/g3.111.000703. Epub 2011 Nov 1.

19.

The selection and use of sorghum (Sorghum propinquum) bacterial artificial chromosomes as cytogenetic FISH probes for maize (Zea mays L.).

Figueroa DM, Davis JD, Strobel C, Conejo MS, Beckham KD, Ring BC, Bass HW.

J Biomed Biotechnol. 2011;2011:386862. doi: 10.1155/2011/386862. Epub 2010 Dec 22.

20.
21.

A historical and modern perspective on plant cytogenetics.

Figueroa DM, Bass HW.

Brief Funct Genomics. 2010 Mar;9(2):95-102. doi: 10.1093/bfgp/elp058. Epub 2010 Jan 27. Review.

PMID:
20110271
22.

Identification of G1-regulated genes in normally cycling human cells.

Beyrouthy MJ, Alexander KE, Baldwin A, Whitfield ML, Bass HW, McGee D, Hurt MM.

PLoS One. 2008;3(12):e3943. doi: 10.1371/journal.pone.0003943. Epub 2008 Dec 15.

23.

Maize centromere mapping: a comparison of physical and genetic strategies.

Okagaki RJ, Jacobs MS, Stec AO, Kynast RG, Buescher E, Rines HW, Vales MI, Riera-Lizarazu O, Schneerman M, Doyle G, Friedman KL, Staub RW, Weber DF, Kamps TL, Amarillo IF, Chase CD, Bass HW, Phillips RL.

J Hered. 2008 Mar-Apr;99(2):85-93. doi: 10.1093/jhered/esm111. Epub 2008 Jan 22.

PMID:
18216028
25.

Predicting chromosomal locations of genetically mapped loci in maize using the Morgan2McClintock Translator.

Lawrence CJ, Seigfried TE, Bass HW, Anderson LK.

Genetics. 2006 Mar;172(3):2007-9. Epub 2005 Dec 30.

27.

Maize ribosome-inactivating proteins (RIPs) with distinct expression patterns have similar requirements for proenzyme activation.

Bass HW, Krawetz JE, OBrian GR, Zinselmeier C, Habben JE, Boston RS.

J Exp Bot. 2004 Oct;55(406):2219-33. Epub 2004 Aug 27.

PMID:
15333641
28.

Integrating genetic linkage maps with pachytene chromosome structure in maize.

Anderson LK, Salameh N, Bass HW, Harper LC, Cande WZ, Weber G, Stack SM.

Genetics. 2004 Apr;166(4):1923-33.

29.
30.

Telomere dynamics unique to meiotic prophase: formation and significance of the bouquet.

Bass HW.

Cell Mol Life Sci. 2003 Nov;60(11):2319-24. Review.

PMID:
14625678
31.

The conservation and divergence of telomeric structures, effects, and functions.

Bass HW.

Cell Mol Life Sci. 2003 Nov;60(11):2281-2. No abstract available.

PMID:
14625674
32.

The maize Single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro.

Marian CO, Bordoli SJ, Goltz M, Santarella RA, Jackson LP, Danilevskaya O, Beckstette M, Meeley R, Bass HW.

Plant Physiol. 2003 Nov;133(3):1336-50. Epub 2003 Oct 23.

34.

Improper chromosome synapsis is associated with elongated RAD51 structures in the maize desynaptic2 mutant.

Franklin AE, Golubovskaya IN, Bass HW, Cande WZ.

Chromosoma. 2003 Jul;112(1):17-25. Epub 2003 Jun 14.

PMID:
12811575
36.

Construction and transposition of a 100-kilobase extended P element in Drosophila.

Ring BC, Bass HW, Garza D.

Genome Res. 2000 Oct;10(10):1605-16.

37.

Chromosome condensation induced by geminivirus infection of mature plant cells.

Bass HW, Nagar S, Hanley-Bowdoin L, Robertson D.

J Cell Sci. 2000 Apr;113 ( Pt 7):1149-60.

38.

Evidence for the coincident initiation of homolog pairing and synapsis during the telomere-clustering (bouquet) stage of meiotic prophase.

Bass HW, Riera-Lizarazu O, Ananiev EV, Bordoli SJ, Rines HW, Phillips RL, Sedat JW, Agard DA, Cande WZ.

J Cell Sci. 2000 Mar;113 ( Pt 6):1033-42.

39.
40.

A defective signal peptide tethers the floury-2 zein to the endoplasmic reticulum membrane.

Gillikin JW, Zhang F, Coleman CE, Bass HW, Larkins BA, Boston RS.

Plant Physiol. 1997 May;114(1):345-52.

42.

Cloning and sequencing of a second ribosome-inactivating protein gene from maize (Zea mays L.).

Bass HW, OBrian GR, Boston RS.

Plant Physiol. 1995 Feb;107(2):661-2. No abstract available.

43.

A maize ribosome-inactivating protein is controlled by the transcriptional activator Opaque-2.

Bass HW, Webster C, OBrian GR, Roberts JK, Boston RS.

Plant Cell. 1992 Feb;4(2):225-34.

44.

Allopolyploidy in bryophytes: Multiple origins of Plagiomnium medium.

Wyatt R, Odrzykoski IJ, Stoneburner A, Bass HW, Galau GA.

Proc Natl Acad Sci U S A. 1988 Aug;85(15):5601-4.

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